View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5945-Insertion-5 (Length: 774)

Name: NF5945-Insertion-5
Description: NF5945
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5945-Insertion-5
NF5945-Insertion-5
[»] chr3 (1 HSPs)
chr3 (9-774)||(33170581-33171353)
[»] chr5 (1 HSPs)
chr5 (59-191)||(25355778-25355910)


Alignment Details
Target: chr3 (Bit Score: 677; Significance: 0; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 677; E-Value: 0
Query Start/End: Original strand, 9 - 774
Target Start/End: Complemental strand, 33171353 - 33170581
Alignment:
Q  9 cgaagtgcagctccgtctagttgttcagagtgtcttgaattattactcggatcttttcagaatgaaaacggatgctgcaaaggctgatcccctctattta 108  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33171353 cgaagtgcagctccgtctagttgttcagagtgtcttgaatcattactcggatcttttcagaatgaaaacggatgctgcaaaggctgatcccctctattta 33171254  T
Q  109 atctccggtgtgtggaaaccatccgtagagcgacttttcctatggatcggaggatctcgcccatcccagcttctaaatgtacaaatctgatcttaatagc 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||    
T  33171253 atctccggtgtgtggaaaccatccgtagagcgacttttcctatggatcggaggatctcggccatcacagcttctaaatgtacaaatctgatcttaatagc 33171154  T
Q  209 gaattagattaaaagtcggta--------acctcaacgaatcactaaccattattagnnnnnnnnnctgctacagctcattgtgccacaacttgagcctt 300  Q
     ||||||||||||||||||||        ||||||||||||||||||||||||||||         ||||||||||||||||||||||||||||||||||    
T  33171153 aaattagattaaaagtcggtactctcgaaacctcaacgaatcactaaccattattagtttttttt-ctgctacagctcattgtgccacaacttgagcctt 33171055  T
Q  301 tgtctgatgaacagatgtttagcattaaaaaacttcacctgtcgtctcagcaagccgaagatgctctttcacaaggactaaataaactccaggagagtct 400  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33171054 tgtctgatgaacagatgtttagcatcaaaaaacttcacctgtcgtctcagcaagccgaagatgctctttcacaaggactaaataaactccaggagagtct 33170955  T
Q  401 ggtccaagacatggcatttgttccattaaatgcagcaaatcatggaattcagatggctattgctatagacaaatttgagggactagaaggttttgtaatc 500  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33170954 ggtccaagacatggcatttgttccattaaatgcagcaaatcatggaattcagatggctattgctatagacaaatttgagggactagaaggttttgtaatc 33170855  T
Q  501 caggtaatgtaacaccaagaaatttgaatcaactaggaattttctaatgccactcttttgtcctaagtcctggtgttcaaactataactagacccttact 600  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  33170854 caggtaatgtaacaccaagaaatctgaatcaactaggaattttctaatgccactcttttatcctaagtcctggtgttcaaactataactagacccttact 33170755  T
Q  601 catcattacattattcaatttgatacattgtgaatgatttgtgttgtccacaggcagatcatctcaggcagcaaactctgatacacatgtcccgcatcct 700  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33170754 catcattacattattcaatttgatacattgtgaatgatttgtgttgtccacaggcagatcatctcaggcagcaaactctgatacacatgtcccgcatcct 33170655  T
Q  701 gtctacacaccaagctgctaggggcttgattgctcttggggaatactttcatcgccttcgtactatttgttctc 774  Q
    |||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  33170654 gtctacgcaccaagctgctaggggcttgattgctctaggggaatactttcatcgccttcgtactatttgttctc 33170581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 45; Significance: 3e-16; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 59 - 191
Target Start/End: Complemental strand, 25355910 - 25355778
Alignment:
Q  59 atcttttcagaatgaaaacggatgctgcaaaggctgatcccctctatttaatctccggtgtgtggaaaccatccgtagagcgacttttcctatggatcgg 158  Q
    ||||||||||||||||| | || |||||||||||||||    ||||||||||||| || || |||||| || | || || || ||||| || ||||||||    
T  25355910 atcttttcagaatgaaagctgaagctgcaaaggctgatgttttctatttaatctctggcgtatggaaatcaccggtcgaacgcctttttctttggatcgg 25355811  T
Q  159 aggatctcgcccatcccagcttctaaatgtaca 191  Q
    ||||||||| ||||| ||  |||||||||||||    
T  25355810 aggatctcgtccatcacaaattctaaatgtaca 25355778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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