View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5945_high_1 (Length: 517)
Name: NF5945_high_1
Description: NF5945
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5945_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 422; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 422; E-Value: 0
Query Start/End: Original strand, 1 - 503
Target Start/End: Original strand, 49849202 - 49849715
Alignment:
| Q |
1 |
attagtaagctatcttcttcaagagtccaaggtcctcttctcagctcattttcttctttagaattaccaaactctttctttgtagttgtggacatagcta |
100 |
Q |
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| T |
49849202 |
attagtaagctatcttcttcaagagtccaaggtcctcttctcagctcattttcttctttagaattaccaaactctttctttgtagttgtggacatagcta |
49849301 |
T |
|
| Q |
101 |
atgttctagtggtgttcatcatacaaagatgtacaagctgtgttcaagatcnnnnnnntattgaaggtgtggaatttaaacactaggtagttgcaattta |
200 |
Q |
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| T |
49849302 |
atgttctagtggtgttcatcatacaaagatgtacaagctgtgttcaagataaaaaaaaaattgaaggtgtggaatttaaacactaggtagttgcaattta |
49849401 |
T |
|
| Q |
201 |
gaaataagttttaggagtgtgagtaacatggtacatgttcatgcttttatatatgctcctcatggaatttcactatacgggtttggtagactaggtacta |
300 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49849402 |
gaaatatgttttaggagtgtgagtaacatggtacatgttcatgcttttatatatgctcctcatggaatttcactatacgggtttggtagactaggtacta |
49849501 |
T |
|
| Q |
301 |
ggcagtagggactaacagtctatacgttaggaccaagaataaataaa----------atatatatatgatttaaataatatttgatgaaaatcgacttga |
390 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49849502 |
ggcagtagggactaacagtctatacgttaggaccaagaataaacaaaatatatatatatatatatatgatttaaataatatttgatgaaaatcgacttga |
49849601 |
T |
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| Q |
391 |
ataccttacgtaa-ggtttcatgtttgagtatcgttgacgaaaaaatatggcttgacgataaacaaaatgtcgataaatacatcgttctgataacatagt |
489 |
Q |
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||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
49849602 |
ataccttacgtaagggtttcatgtttgattatcgttgacgaaaaaatatggcttgacgataaacaaaatatcgataaatacatcgttctgataacatagt |
49849701 |
T |
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| Q |
490 |
accttgttctatgt |
503 |
Q |
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| T |
49849702 |
atcttgttctatgt |
49849715 |
T |
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