View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5945_high_2 (Length: 502)
Name: NF5945_high_2
Description: NF5945
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5945_high_2 |
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Alignment Details
Target: chr6 (Bit Score: 427; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 427; E-Value: 0
Query Start/End: Original strand, 8 - 484
Target Start/End: Complemental strand, 29296028 - 29295557
Alignment:
| Q |
8 |
ccaagaatatgcttgaaaatgttacctcttccaccttcttgaataattttggcacctaaacttaacttacccttcaaagtcttagaaaatttaggaccta |
107 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
29296028 |
ccaaaaatatgcttgaaaatgttacctcttccaccttcttgaataattttggcacctaaacttaacttacccttcaaagtctcagaaaatttaggaccta |
29295929 |
T |
|
| Q |
108 |
atttcactgcaatcataagacaacacattgtgagcaaggttttataataaaggtccgcaaccgct-actttggctgcaatgtcaaggtttttgagatttc |
206 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
29295928 |
atttcactgcaatcataagacaacacattgtgagcaaggttttataataaaggtccgcaaccgcttactttggctgcaatgtcaaggtttttgagatttc |
29295829 |
T |
|
| Q |
207 |
tgcaaccacgtttaatcacgaatgaaacaaagacacaaatatttgatactggcacattgtaataacttggaaaaagaatgaaataattaaatttagaaac |
306 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29295828 |
tgcaaccacgtttaatcacgaatgaaacaaagacacgaatatttgatactggcacgttgtaataacttggaaaaagaatgaaataattaaatttagaaac |
29295729 |
T |
|
| Q |
307 |
gccttctatgtgaagtgtcagtgctacatatttgcaatcacaattgcacatcaacaataattttccgtaatatcaaagatagtgacataatcataaccgt |
406 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
29295728 |
gccttctatgtgaagtgtcagtgctacatatttgcaatcacagttgcacatcaacaataattttccgtaatat------tagtgacataatcataaccgt |
29295635 |
T |
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| Q |
407 |
gactgaaatttaaaacctcgaattgaaatataaatcaatgtgatatctaaactatgagttaccatgttcatgaatact |
484 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29295634 |
gactgaaatttaaaacctcgaattgaaatataaatcaatgtgatatctaaactatgagttaccatgttcatgaatact |
29295557 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 8 - 120
Target Start/End: Original strand, 42395495 - 42395607
Alignment:
| Q |
8 |
ccaagaatatgcttgaaaatgttacctcttccaccttcttgaataattttggcacctaaacttaacttacccttcaaagtcttagaaaatttaggaccta |
107 |
Q |
| |
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|||| ||||| |||||||||||| ||||| ||||||||||| || || | ||||| ||||| ||||||||||||| ||||| || | ||||||||||| |
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| T |
42395495 |
ccaaaaatattcttgaaaatgttccctctcccaccttcttgtattatccttgcacccaaactcaacttacccttcagagtctctgatagtttaggaccta |
42395594 |
T |
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| Q |
108 |
atttcactgcaat |
120 |
Q |
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||| |||||||| |
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| T |
42395595 |
gttttactgcaat |
42395607 |
T |
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