View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5945_low_16 (Length: 226)

Name: NF5945_low_16
Description: NF5945
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5945_low_16
NF5945_low_16
[»] chr6 (30 HSPs)
chr6 (20-213)||(4627419-4627612)
chr6 (20-213)||(4258842-4259035)
chr6 (20-212)||(4594280-4594472)
chr6 (20-164)||(4502959-4503103)
chr6 (20-196)||(4517626-4517802)
chr6 (31-196)||(4623593-4623758)
chr6 (20-176)||(4575761-4575917)
chr6 (20-187)||(3173298-3173465)
chr6 (20-163)||(4488863-4489006)
chr6 (20-203)||(4618580-4618763)
chr6 (19-176)||(4561968-4562124)
chr6 (20-156)||(4507237-4507373)
chr6 (20-203)||(4565308-4565491)
chr6 (20-187)||(4482160-4482327)
chr6 (20-202)||(4558405-4558587)
chr6 (20-202)||(4581294-4581476)
chr6 (20-213)||(4265723-4265916)
chr6 (28-213)||(4298172-4298357)
chr6 (20-212)||(4603380-4603572)
chr6 (20-202)||(4586912-4587094)
chr6 (20-166)||(4572282-4572428)
chr6 (27-125)||(4612391-4612489)
chr6 (20-196)||(4569360-4569532)
chr6 (20-130)||(4513645-4513755)
chr6 (20-202)||(4599443-4599625)
chr6 (23-90)||(4255478-4255545)
chr6 (20-127)||(4462562-4462669)
chr6 (24-127)||(4471269-4471372)
chr6 (37-71)||(4483534-4483568)
chr6 (38-71)||(4496189-4496222)
[»] scaffold0199 (1 HSPs)
scaffold0199 (20-212)||(1031-1220)
[»] chr8 (2 HSPs)
chr8 (20-212)||(1675794-1675983)
chr8 (96-212)||(16685029-16685145)
[»] chr3 (1 HSPs)
chr3 (20-203)||(1282712-1282895)
[»] scaffold0475 (1 HSPs)
scaffold0475 (20-205)||(2098-2286)
[»] scaffold0288 (1 HSPs)
scaffold0288 (20-205)||(2117-2305)
[»] chr5 (2 HSPs)
chr5 (20-213)||(24104364-24104557)
chr5 (21-53)||(26903638-26903670)
[»] chr7 (1 HSPs)
chr7 (20-213)||(3088014-3088207)
[»] scaffold0477 (1 HSPs)
scaffold0477 (142-211)||(3310-3379)


Alignment Details
Target: chr6 (Bit Score: 186; Significance: 1e-101; HSPs: 30)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 20 - 213
Target Start/End: Complemental strand, 4627612 - 4627419
Alignment:
20 aacctttgtcaacactgaatacaatcacaaacgtttgctcaaatcaagaggtgaaaatgcctttgatggtttcgatgattttacctttgagaccatacca 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
4627612 aacctttgtcaacactgaatacaatcacaaacgtttgctcaaatcaagaggtgaaaatgcctttgatggtttcgatgattttacctttgagaccatacca 4627513  T
120 gatggtttaacaccactagaaggtgatggcgatgttactcaagacataccctctctttctcaatcaataagaaagaacttccttcagccctttg 213  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||    
4627512 gatggtttaacaccactagaaggtgatggcgatgttactcaagacataccatctctttcccaatcaataagaaagaacttccttcagccctttg 4627419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 20 - 213
Target Start/End: Original strand, 4258842 - 4259035
Alignment:
20 aacctttgtcaacactgaatacaatcacaaacgtttgctcaaatcaagaggtgaaaatgcctttgatggtttcgatgattttacctttgagaccatacca 119  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||  |||||||||||||||||| || | |    
4258842 aacctttgtcaacactgaatataatcacaaacgtttgctcaaatcaagaggtgaaaatgccgttgatggtttcattgattttacctttgagactattcaa 4258941  T
120 gatggtttaacaccactagaaggtgatggcgatgttactcaagacataccctctctttctcaatcaataagaaagaacttccttcagccctttg 213  Q
    |||||| | || ||| | ||||||||||||||||||||||||||| ||||||| ||||||||||| ||||||||||||||||||||||||||||    
4258942 gatggtctgactccagtggaaggtgatggcgatgttactcaagacgtaccctccctttctcaatctataagaaagaacttccttcagccctttg 4259035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 117; E-Value: 9e-60
Query Start/End: Original strand, 20 - 212
Target Start/End: Complemental strand, 4594472 - 4594280
Alignment:
20 aacctttgtcaacactgaatacaatcacaaacgtttgctcaaatcaagaggtgaaaatgcctttgatggtttcgatgattttacctttgagaccatacca 119  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||  ||||||||| |||||||||  || ||||| |||||| |||||||||    
4594472 aacctttgtcaacactgaatacaatcataaacgtttgctcaaatcaagaggtccaaatgccttagatggtttccctggttttagctttgaaaccatacca 4594373  T
120 gatggtttaacaccactagaaggtgatggcgatgttactcaagacataccctctctttctcaatcaataagaaagaacttccttcagcccttt 212  Q
    |||||| |||||||| | ||||||||||| ||||||| ||||||||||||||||||| ||||||| ||||||||||| |||||| | ||||||    
4594372 gatggtctaacaccaatggaaggtgatggtgatgttagtcaagacataccctctcttgctcaatctataagaaagaatttccttaaacccttt 4594280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 20 - 164
Target Start/End: Original strand, 4502959 - 4503103
Alignment:
20 aacctttgtcaacactgaatacaatcacaaacgtttgctcaaatcaagaggtgaaaatgcctttgatggtttcgatgattttacctttgagaccatacca 119  Q
    ||||||||||||||| ||||||||||||||||| ||||||||||||||||||  ||||||||||||||||||| ||||||||||||||||||||||||||    
4502959 aacctttgtcaacaccgaatacaatcacaaacgcttgctcaaatcaagaggtccaaatgcctttgatggtttcaatgattttacctttgagaccatacca 4503058  T
120 gatggtttaacaccactagaaggtgatggcgatgttactcaagac 164  Q
    ||||||||||| ||  | ||||||||||| ||||||| |||||||    
4503059 gatggtttaactccggtggaaggtgatggtgatgttagtcaagac 4503103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 20 - 196
Target Start/End: Complemental strand, 4517802 - 4517626
Alignment:
20 aacctttgtcaacactgaatacaatcacaaacgtttgctcaaatcaagaggtgaaaatgcctttgatggtttcgatgattttacctttgagaccatacca 119  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||  ||| |||||||||||||||  |||||||||||||||||| || |||    
4517802 aacctttgtcaacaccgaatacaatcacaaacgtttgctcaaatcaagaggtccaaaagcctttgatggtttcactgattttacctttgagactattcca 4517703  T
120 gatggtttaacaccactagaaggtgatggcgatgttactcaagacataccctctctttctcaatcaataagaaagaa 196  Q
    ||||||||||| ||  ||||||| ||||| ||||||| |||||||||   |||||||||  | ||||||||||||||    
4517702 gatggtttaactccgatagaaggcgatggtgatgttagtcaagacattatctctctttccgattcaataagaaagaa 4517626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 31 - 196
Target Start/End: Complemental strand, 4623758 - 4623593
Alignment:
31 acactgaatacaatcacaaacgtttgctcaaatcaagaggtgaaaatgcctttgatggtttcgatgattttacctttgagaccataccagatggtttaac 130  Q
    |||| ||||||||||||||||| ||||||||||||||||||  ||| |||||||||||||||   || |||| |||||||||||| ||||||||||||||    
4623758 acaccgaatacaatcacaaacgcttgctcaaatcaagaggtccaaaggcctttgatggtttcacggactttaactttgagaccattccagatggtttaac 4623659  T
131 accactagaaggtgatggcgatgttactcaagacataccctctctttctcaatcaataagaaagaa 196  Q
    |||| | ||||||||||| ||||||| |||||||||||||||||||||| | |||||||| |||||    
4623658 accaatggaaggtgatggtgatgttagtcaagacataccctctctttctgattcaataaggaagaa 4623593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 20 - 176
Target Start/End: Complemental strand, 4575917 - 4575761
Alignment:
20 aacctttgtcaacactgaatacaatcacaaacgtttgctcaaatcaagaggtgaaaatgcctttgatggtttcgatgattttacctttgagaccatacca 119  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||| |||| ||||||||| ||||||    
4575917 aacctttgttaacactgaatacaatcacaaacgtttgctcaaatcaagaggtgaaaatgcctttgatggtttcactgactttaactttgagactatacca 4575818  T
120 gatggtttaacaccactagaaggtgatggcgatgttactcaagacataccctctctt 176  Q
    ||||||||||| |||   || ||| |||| ||||| | ||||||| ||| |||||||    
4575817 gatggtttaactccaaaggatggtaatggtgatgtaagtcaagacctacactctctt 4575761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 20 - 187
Target Start/End: Complemental strand, 3173465 - 3173298
Alignment:
20 aacctttgtcaacactgaatacaatcacaaacgtttgctcaaatcaagaggtgaaaatgcctttgatggtttcgatgattttacctttgagaccatacca 119  Q
    ||||||||| ||||||||||||||||||||||| |||||||||||||  |||  ||||||||||||||||||| ||||||||| ||||||||| ||||||    
3173465 aacctttgtaaacactgaatacaatcacaaacggttgctcaaatcaaagggtccaaatgcctttgatggtttcaatgattttaactttgagactatacca 3173366  T
120 gatggtttaacaccactagaaggtgatggcgatgttactcaagacataccctctctttctcaatcaat 187  Q
    |||||||||||  || | ||||||||||| ||||||| ||||||| ||| | |||||| || ||||||    
3173365 gatggtttaacttcaatggaaggtgatggtgatgttagtcaagacttacgcgctctttgtcgatcaat 3173298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 20 - 163
Target Start/End: Original strand, 4488863 - 4489006
Alignment:
20 aacctttgtcaacactgaatacaatcacaaacgtttgctcaaatcaagaggtgaaaatgcctttgatggtttcgatgattttacctttgagaccatacca 119  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||  ||||||||||||||||||   |||||||| ||||||||| || |||    
4488863 aacctttgtcaacactgaatacaatcacaaacgcttgctcaaatcaagaggtccaaatgcctttgatggtttaactgattttagctttgagactattcca 4488962  T
120 gatggtttaacaccactagaaggtgatggcgatgttactcaaga 163  Q
    ||||||||||| |||  ||| |||||||||||||||| ||||||    
4488963 gatggtttaactccaacagatggtgatggcgatgttagtcaaga 4489006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 20 - 203
Target Start/End: Complemental strand, 4618763 - 4618580
Alignment:
20 aacctttgtcaacactgaatacaatcacaaacgtttgctcaaatcaagaggtgaaaatgcctttgatggtttcgatgattttacctttgagaccatacca 119  Q
    ||||||||| ||||| ||||||||||||||||| ||||||||||||||||||  ||| || ||||||||||||   || |||| |||||||| ||| |||    
4618763 aacctttgttaacaccgaatacaatcacaaacgcttgctcaaatcaagaggtccaaaggcttttgatggtttcacggactttaactttgagagcattcca 4618664  T
120 gatggtttaacaccactagaaggtgatggcgatgttactcaagacataccctctctttctcaatcaataagaaagaacttcctt 203  Q
    ||||||||||||||| | ||||||||||| ||||||| ||||||  ||||  |||||| ||||||| |||||||||||||||||    
4618663 gatggtttaacaccaatggaaggtgatggtgatgttagtcaagatgtaccaactctttgtcaatcagtaagaaagaacttcctt 4618580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 19 - 176
Target Start/End: Complemental strand, 4562124 - 4561968
Alignment:
19 aaacctttgtcaacactgaatacaatcacaaacgtttgctcaaatcaagaggtgaaaatgcctttgatggtttcgatgattttacctttgagaccatacc 118  Q
    |||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||  ||| |||| ||||||||| |||||    
4562124 aaacctttgttaacactgaatacaatcacaaacgtttgct-aaatcaagaggtgaaaatgcctttgatggtttcactgactttaactttgagactatacc 4562026  T
119 agatggtttaacaccactagaaggtgatggcgatgttactcaagacataccctctctt 176  Q
    |||||||||||| |||   || |||||||| ||| ||| ||||||| ||| |||||||    
4562025 agatggtttaactccaaaggatggtgatggtgatattagtcaagacctacactctctt 4561968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 20 - 156
Target Start/End: Complemental strand, 4507373 - 4507237
Alignment:
20 aacctttgtcaacactgaatacaatcacaaacgtttgctcaaatcaagaggtgaaaatgcctttgatggtttcgatgattttacctttgagaccatacca 119  Q
    ||||||||| ||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||  |||||||| |||||||||  |||||    
4507373 aacctttgttaacaccgaatacaatcacaaacgcttgctcaaatcaagaggtgaaaatgcctttgatggtttcactgattttaactttgagactctacca 4507274  T
120 gatggtttaacaccactagaaggtgatggcgatgtta 156  Q
    ||||||||||| ||| | || |||||||| |||||||    
4507273 gatggtttaactccaatggatggtgatggtgatgtta 4507237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 20 - 203
Target Start/End: Complemental strand, 4565491 - 4565308
Alignment:
20 aacctttgtcaacactgaatacaatcacaaacgtttgctcaaatcaagaggtgaaaatgcctttgatggtttcgatgattttacctttgagaccatacca 119  Q
    ||||||||||||||||||||||||||| ||||| ||||| ||||||||||||  ||||||||| ||||||| |  || ||||  |||||| |||||||||    
4565491 aacctttgtcaacactgaatacaatcataaacgattgctaaaatcaagaggtccaaatgccttagatggttcccgtggtttttgctttgaaaccatacca 4565392  T
120 gatggtttaacaccactagaaggtgatggcgatgttactcaagacataccctctctttctcaatcaataagaaagaacttcctt 203  Q
    |||||| |||||||  ||||||||||||| ||||||| ||||||  |||| |||||| ||||||| |||||||| || ||||||    
4565391 gatggtctaacaccgatagaaggtgatggtgatgttagtcaagatgtaccttctcttgctcaatctataagaaaaaatttcctt 4565308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 20 - 187
Target Start/End: Complemental strand, 4482327 - 4482160
Alignment:
20 aacctttgtcaacactgaatacaatcacaaacgtttgctcaaatcaagaggtgaaaatgcctttgatggtttcgatgattttacctttgagaccatacca 119  Q
    ||||||||||||||| ||||||||||||||||||||||| |||||||| |||  ||| |||||||||||||||  ||||||||||||||| || ||||||    
4482327 aacctttgtcaacaccgaatacaatcacaaacgtttgctaaaatcaaggggtccaaaagcctttgatggtttcactgattttacctttgaaacgatacca 4482228  T
120 gatggtttaacaccactagaaggtgatggcgatgttactcaagacataccctctctttctcaatcaat 187  Q
    ||||||||||| ||| | ||||||||||  || || | ||||||| ||  ||||||| ||||||||||    
4482227 gatggtttaactccaattgaaggtgatgatgaagtaagtcaagacttattctctcttactcaatcaat 4482160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 20 - 202
Target Start/End: Complemental strand, 4558587 - 4558405
Alignment:
20 aacctttgtcaacactgaatacaatcacaaacgtttgctcaaatcaagaggtgaaaatgcctttgatggtttcgatgattttacctttgagaccatacca 119  Q
    ||||| ||| |||||||||||||| |||||||| |||||||| |||||||||  |||||||||||||||||||  |||||||| ||||||||| || ||     
4558587 aacctatgtaaacactgaatacaaccacaaacggttgctcaagtcaagaggtccaaatgcctttgatggtttcactgattttagctttgagactattccg 4558488  T
120 gatggtttaacaccactagaaggtgatggcgatgttactcaagacataccctctctttctcaatcaataagaaagaacttcct 202  Q
    ||||||||||| |||   || |||||||||||||||| |||||||||   | |||||| | ||||||| ||||||||||||||    
4558487 gatggtttaactccaacggatggtgatggcgatgttagtcaagacatttacgctctttgtaaatcaatcagaaagaacttcct 4558405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 20 - 202
Target Start/End: Complemental strand, 4581476 - 4581294
Alignment:
20 aacctttgtcaacactgaatacaatcacaaacgtttgctcaaatcaagaggtgaaaatgcctttgatggtttcgatgattttacctttgagaccatacca 119  Q
    ||||||||||||||| ||||||||||||||||| ||||||||||||||||||  ||| || ||||||||||||   ||||||||||||||||| || |||    
4581476 aacctttgtcaacaccgaatacaatcacaaacgcttgctcaaatcaagaggtccaaaagcgtttgatggtttcaccgattttacctttgagactattcca 4581377  T
120 gatggtttaacaccactagaaggtgatggcgatgttactcaagacataccctctctttctcaatcaataagaaagaacttcct 202  Q
    ||||||||||| ||  ||||||| ||| | ||||||| ||||||||||    |||| | | ||||||| ||||||||||||||    
4581376 gatggtttaactccgatagaaggcgatagtgatgttaatcaagacatatatgctctatgtgaatcaatcagaaagaacttcct 4581294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 20 - 213
Target Start/End: Original strand, 4265723 - 4265916
Alignment:
20 aacctttgtcaacactgaatacaatcacaaacgtttgctcaaatcaagaggtgaaaatgcctttgatggtttcgatgattttacctttgagaccatacca 119  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||  |||| |  |||||||||||  ||| ||||  |||||||||||||||    
4265723 aacctttgtcaacactgaatacaatcacaaacgcttgctcaaatcaagaggtccaaattctcttgatggtttcagtgactttaagtttgagaccatacca 4265822  T
120 gatggtttaacaccactagaaggtgatggcgatgttactcaagacataccctctctttctcaatcaataagaaagaacttccttcagccctttg 213  Q
    |||||| |||| ||| | |||||  |||| |||| |||||||||||||  | |||||   |||||||| |  | |||||||||||| |||||||    
4265823 gatggtctaactccaatggaaggcaatggtgatgctactcaagacatataccctcttgtgcaatcaatcatgacgaacttccttcaaccctttg 4265916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 28 - 213
Target Start/End: Original strand, 4298172 - 4298357
Alignment:
28 tcaacactgaatacaatcacaaacgtttgctcaaatcaagaggtgaaaatgcctttgatggtttcgatgattttacctttgagaccataccagatggttt 127  Q
    ||||||| ||||||||||||||||   ||||| ||||||| |||  ||| || ||||||||||||    | |||| ||||||||| || ||||||||| |    
4298172 tcaacaccgaatacaatcacaaacacctgctcgaatcaaggggtccaaaagcttttgatggtttcaccaactttagctttgagactattccagatggtct 4298271  T
128 aacaccactagaaggtgatggcgatgttactcaagacataccctctctttctcaatcaataagaaagaacttccttcagccctttg 213  Q
     || |||   ||||||||||| |||||||||||||||||||| |||||||| |||||||| |||||||||||||||||||||||||    
4298272 gactccaacggaaggtgatggagatgttactcaagacataccatctctttcccaatcaatcagaaagaacttccttcagccctttg 4298357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 20 - 212
Target Start/End: Complemental strand, 4603572 - 4603380
Alignment:
20 aacctttgtcaacactgaatacaatcacaaacgtttgctcaaatcaagaggtgaaaatgcctttgatggtttcgatgattttacctttgagaccatacca 119  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||   |||||||| || || |||  |||||||| |||||| || || |||    
4603572 aacctttgtcaacaccgaatacaatcacaaacgtttgctcaaatcaagaggtcctaatgccttagacggcttcactgattttagctttgaaacaatccca 4603473  T
120 gatggtttaacaccactagaaggtgatggcgatgttactcaagacataccctctctttctcaatcaataagaaagaacttccttcagcccttt 212  Q
    |||||  |||||||  | ||||||||||   |||||| ||||||  |||| ||| |||||||||| ||||||||||| |||||| | ||||||    
4603472 gatggactaacaccgatggaaggtgatgataatgttagtcaagatgtaccttctatttctcaatctataagaaagaatttccttaaacccttt 4603380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 20 - 202
Target Start/End: Complemental strand, 4587094 - 4586912
Alignment:
20 aacctttgtcaacactgaatacaatcacaaacgtttgctcaaatcaagaggtgaaaatgcctttgatggtttcgatgattttacctttgagaccatacca 119  Q
    ||||||||| ||||||||||||||||||||||| ||||| || ||||||| |  |||||||||||||| |||   |||||||| ||||||||| || |||    
4587094 aacctttgtaaacactgaatacaatcacaaacggttgcttaagtcaagagctccaaatgcctttgatgatttaactgattttagctttgagactattcca 4586995  T
120 gatggtttaacaccactagaaggtgatggcgatgttactcaagacataccctctctttctcaatcaataagaaagaacttcct 202  Q
    ||||||||||| |||   || |||||||| ||||||| |||||||||   | |||||| | ||||||| ||||||||||||||    
4586994 gatggtttaactccaacggatggtgatggtgatgttagtcaagacatttacgctctttgtaaatcaatcagaaagaacttcct 4586912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 20 - 166
Target Start/End: Complemental strand, 4572428 - 4572282
Alignment:
20 aacctttgtcaacactgaatacaatcacaaacgtttgctcaaatcaagaggtgaaaatgcctttgatggtttcgatgattttacctttgagaccatacca 119  Q
    ||||| ||| ||||||||||||||||||||||| |||||||| ||||||||| ||||||||||||||||||||    |||||| ||||||||  || |||    
4572428 aacctatgtaaacactgaatacaatcacaaacggttgctcaagtcaagaggtcaaaatgcctttgatggtttcaccaattttaactttgagagtattcca 4572329  T
120 gatggtttaacaccactagaaggtgatggcgatgttactcaagacat 166  Q
    ||||||||| | |||   || || ||||||||||||| |||||||||    
4572328 gatggtttatctccaacggatggcgatggcgatgttagtcaagacat 4572282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 27 - 125
Target Start/End: Original strand, 4612391 - 4612489
Alignment:
27 gtcaacactgaatacaatcacaaacgtttgctcaaatcaagaggtgaaaatgcctttgatggtttcgatgattttacctttgagaccataccagatggt 125  Q
    |||||||| ||||||||||||||||| ||||||||||||||||||  ||||||||||| |||||||  |||||||||||||||| | ||||||||||||    
4612391 gtcaacaccgaatacaatcacaaacgcttgctcaaatcaagaggtccaaatgcctttgttggtttcactgattttacctttgaggctataccagatggt 4612489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 20 - 196
Target Start/End: Complemental strand, 4569532 - 4569360
Alignment:
20 aacctttgtcaacactgaatacaatcacaaacgtttgctcaaatcaagaggtgaaaatgcctttgatggtttcgatgattttacctttgagaccatacca 119  Q
    ||||||||||||||| |||    ||||||||| |||||||||||||||||||  ||| |||||||||||||||  |||||||||||||||||| || |||    
4569532 aacctttgtcaacaccgaa----atcacaaacatttgctcaaatcaagaggtccaaaagcctttgatggtttcactgattttacctttgagactattcca 4569437  T
120 gatggtttaacaccactagaaggtgatggcgatgttactcaagacataccctctctttctcaatcaataagaaagaa 196  Q
    ||||||||||| ||   ||||||| |||| ||| ||| |||||| ||   |||||||  | | ||||||||||||||    
4569436 gatggtttaactccgacagaaggttatggtgatattagtcaagaaattgtctctcttgatgattcaataagaaagaa 4569360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 20 - 130
Target Start/End: Original strand, 4513645 - 4513755
Alignment:
20 aacctttgtcaacactgaatacaatcacaaacgtttgctcaaatcaagaggtgaaaatgcctttgatggtttcgatgattttacctttgagaccatacca 119  Q
    ||||||||| ||||| ||||||||||||||||||||||||||||||||||||   ||||| ||||||||||||   ||||||  ||||||||| || ||     
4513645 aacctttgttaacaccgaatacaatcacaaacgtttgctcaaatcaagaggtcctaatgcttttgatggtttcaccgattttcgctttgagactattcct 4513744  T
120 gatggtttaac 130  Q
    |||||||||||    
4513745 gatggtttaac 4513755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 20 - 202
Target Start/End: Complemental strand, 4599625 - 4599443
Alignment:
20 aacctttgtcaacactgaatacaatcacaaacgtttgctcaaatcaagaggtgaaaatgcctttgatggtttcgatgattttacctttgagaccatacca 119  Q
    |||||| || ||||| || |||||||||||||| ||||||||||||||||||   ||| |   | ||||||||  ||||||| |||| ||||| || |||    
4599625 aaccttcgtgaacaccgagtacaatcacaaacgcttgctcaaatcaagaggtcctaattctcgtaatggtttcactgatttttccttcgagactattcca 4599526  T
120 gatggtttaacaccactagaaggtgatggcgatgttactcaagacataccctctctttctcaatcaataagaaagaacttcct 202  Q
    ||||||||||| ||| |||| |||||||| |||||||| || ||||||   ||||| | | ||||||| ||||| ||||||||    
4599525 gatggtttaactccaatagatggtgatggtgatgttacacaggacataaattctctctgtaaatcaatcagaaataacttcct 4599443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 23 - 90
Target Start/End: Original strand, 4255478 - 4255545
Alignment:
23 ctttgtcaacactgaatacaatcacaaacgtttgctcaaatcaagaggtgaaaatgcctttgatggtt 90  Q
    |||||||||||| ||||||||||||||||| |||||| |||||||||||  ||| |||||||||||||    
4255478 ctttgtcaacaccgaatacaatcacaaacgcttgctcgaatcaagaggtccaaaagcctttgatggtt 4255545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 20 - 127
Target Start/End: Complemental strand, 4462669 - 4462562
Alignment:
20 aacctttgtcaacactgaatacaatcacaaacgtttgctcaaatcaagaggtgaaaatgcctttgatggtttcgatgattttacctttgagaccatacca 119  Q
    ||||||||||||||||||||||||||||||  | |||||||| |||||||||   ||| |  | |||||||||  ||| |||| |||||||||||| |||    
4462669 aacctttgtcaacactgaatacaatcacaattgcttgctcaattcaagaggtcctaattctctagatggtttcactgactttaactttgagaccattcca 4462570  T
120 gatggttt 127  Q
     |||||||    
4462569 aatggttt 4462562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 24 - 127
Target Start/End: Complemental strand, 4471372 - 4471269
Alignment:
24 tttgtcaacactgaatacaatcacaaacgtttgctcaaatcaagaggtgaaaatgcctttgatggtttcgatgattttacctttgagaccataccagatg 123  Q
    |||||||||||||||||||||||||||   |||||||| |||||||||    || |  |||||||||||  ||| |||| |||||||||||| ||| |||    
4471372 tttgtcaacactgaatacaatcacaaagccttgctcaattcaagaggtcctgattctcttgatggtttcactgactttaactttgagaccattccaaatg 4471273  T
124 gttt 127  Q
    ||||    
4471272 gttt 4471269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 37 - 71
Target Start/End: Original strand, 4483534 - 4483568
Alignment:
37 aatacaatcacaaacgtttgctcaaatcaagaggt 71  Q
    |||||||||||||||||||||||||||||||||||    
4483534 aatacaatcacaaacgtttgctcaaatcaagaggt 4483568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 38 - 71
Target Start/End: Complemental strand, 4496222 - 4496189
Alignment:
38 atacaatcacaaacgtttgctcaaatcaagaggt 71  Q
    ||||||| ||||||||||||||||||||||||||    
4496222 atacaatgacaaacgtttgctcaaatcaagaggt 4496189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0199 (Bit Score: 99; Significance: 5e-49; HSPs: 1)
Name: scaffold0199
Description:

Target: scaffold0199; HSP #1
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 20 - 212
Target Start/End: Complemental strand, 1220 - 1031
Alignment:
20 aacctttgtcaacactgaatacaatcacaaacgtttgctcaaatcaagaggtgaaaatgcctttgatggtttcgatgattttacctttgagaccatacca 119  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||  || |||||| |||||||||  |||||||| |||||| ||||| |||    
1220 aacctatgtcaacactgaatacaatcacaaacgtttgctcaaatcaagaggtccaactgccttggatggtttcactgattttagctttgaaaccatccca 1121  T
120 gatggtttaacaccactagaaggtgatggcgatgttactcaagacataccctctctttctcaatcaataagaaagaacttccttcagcccttt 212  Q
    |||||| |||||||||||||||||||||| ||||||| ||||    |||| ||||||| |||||| ||||||||||| |||||| | ||||||    
1120 gatggtctaacaccactagaaggtgatggtgatgttagtcaa---ctaccttctctttgtcaatctataagaaagaatttccttaaacccttt 1031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 99; Significance: 5e-49; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 20 - 212
Target Start/End: Complemental strand, 1675983 - 1675794
Alignment:
20 aacctttgtcaacactgaatacaatcacaaacgtttgctcaaatcaagaggtgaaaatgcctttgatggtttcgatgattttacctttgagaccatacca 119  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||  || |||||| |||||||||  |||||||| |||||| ||||| |||    
1675983 aacctatgtcaacactgaatacaatcacaaacgtttgctcaaatcaagaggtccaactgccttggatggtttcactgattttagctttgaaaccatccca 1675884  T
120 gatggtttaacaccactagaaggtgatggcgatgttactcaagacataccctctctttctcaatcaataagaaagaacttccttcagcccttt 212  Q
    |||||| |||||||||||||||||||||| ||||||| ||||    |||| ||||||| |||||| ||||||||||| |||||| | ||||||    
1675883 gatggtctaacaccactagaaggtgatggtgatgttagtcaa---ctaccttctctttgtcaatctataagaaagaatttccttaaacccttt 1675794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 96 - 212
Target Start/End: Original strand, 16685029 - 16685145
Alignment:
96 gattttacctttgagaccataccagatggtttaacaccactagaaggtgatggcgatgttactcaagacataccctctctttctcaatcaataagaaaga 195  Q
    ||||||| ||||||||| || ||| |||||||| | |||   || |||||||||||||||| ||||||||||| | |||||| | ||||||| |||||||    
16685029 gattttagctttgagactattccatatggtttacctccaacggatggtgatggcgatgttagtcaagacatacacgctctttgtaaatcaatcagaaaga 16685128  T
196 acttccttcagcccttt 212  Q
    ||||||| || ||||||    
16685129 acttcctccaacccttt 16685145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 92; Significance: 8e-45; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 20 - 203
Target Start/End: Complemental strand, 1282895 - 1282712
Alignment:
20 aacctttgtcaacactgaatacaatcacaaacgtttgctcaaatcaagaggtgaaaatgcctttgatggtttcgatgattttacctttgagaccatacca 119  Q
    ||||||||| || |||||||||||||||||||| ||||||||||||||||||  ||||||| | |||||||||  |||||||| |||||| ||||| |||    
1282895 aacctttgttaatactgaatacaatcacaaacgcttgctcaaatcaagaggtccaaatgccctagatggtttcactgattttagctttgaaaccatccca 1282796  T
120 gatggtttaacaccactagaaggtgatggcgatgttactcaagacataccctctctttctcaatcaataagaaagaacttcctt 203  Q
    |||||| ||||| |||||||||||||||| ||||||| |||| |  |||| ||||||| |||||| ||||||||||| ||||||    
1282795 gatggtctaacatcactagaaggtgatggtgatgttagtcaacatgtaccttctctttgtcaatctataagaaagaatttcctt 1282712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0475 (Bit Score: 71; Significance: 3e-32; HSPs: 1)
Name: scaffold0475
Description:

Target: scaffold0475; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 20 - 205
Target Start/End: Complemental strand, 2286 - 2098
Alignment:
20 aacctttgtcaacactgaatacaatcacaaacgtttgctcaaatcaagaggtgaaaatgcctttgatggtttcgatgattttacctttgagaccatacca 119  Q
    ||||||||||||||||||||||||||| ||||| ||||||||||||||||||   |||||  |||||||||||| |||||||  ||| ||||| || ||     
2286 aacctttgtcaacactgaatacaatcataaacgcttgctcaaatcaagaggtcctaatgctcttgatggtttcgctgatttttgcttcgagactattccc 2187  T
120 gatggtttaacaccactagaaggtgatggcg---atgttactcaagacataccctctctttctcaatcaataagaaagaacttccttca 205  Q
    ||||||||||| ||| | |||| |||||  |   |||||| ||||||||||| |||||||| | ||||||| ||||| |||||||||||    
2186 gatggtttaactccagtggaagatgatgatggtaatgttagtcaagacatactctctctttgtaaatcaatcagaaaaaacttccttca 2098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0288 (Bit Score: 71; Significance: 3e-32; HSPs: 1)
Name: scaffold0288
Description:

Target: scaffold0288; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 20 - 205
Target Start/End: Original strand, 2117 - 2305
Alignment:
20 aacctttgtcaacactgaatacaatcacaaacgtttgctcaaatcaagaggtgaaaatgcctttgatggtttcgatgattttacctttgagaccatacca 119  Q
    ||||||||||||||||||||||||||| ||||| ||||||||||||||||||   |||||  |||||||||||| |||||||  ||| ||||| || ||     
2117 aacctttgtcaacactgaatacaatcataaacgcttgctcaaatcaagaggtcctaatgctcttgatggtttcgctgatttttgcttcgagactattccc 2216  T
120 gatggtttaacaccactagaaggtgatggcg---atgttactcaagacataccctctctttctcaatcaataagaaagaacttccttca 205  Q
    ||||||||||| ||| | |||| |||||  |   |||||| ||||||||||| |||||||| | ||||||| ||||| |||||||||||    
2217 gatggtttaactccagtggaagatgatgatggtaatgttagtcaagacatactctctctttgtaaatcaatcagaaaaaacttccttca 2305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 66; Significance: 3e-29; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 20 - 213
Target Start/End: Complemental strand, 24104557 - 24104364
Alignment:
20 aacctttgtcaacactgaatacaatcacaaacgtttgctcaaatcaagaggtgaaaatgcctttgatggtttcgatgattttacctttgagaccatacca 119  Q
    |||||| || ||||| ||||||||||||||||| |||||| ||||||||| |   ||| |  ||||||||||| |||| |||| ||||||||||||||||    
24104557 aaccttcgtgaacaccgaatacaatcacaaacgcttgctcgaatcaagagatcctaattctcttgatggtttcaatgactttaactttgagaccatacca 24104458  T
120 gatggtttaacaccactagaaggtgatggcgatgttactcaagacataccctctctttctcaatcaataagaaagaacttccttcagccctttg 213  Q
    |||||| |||| ||| | |||||  |||| ||||||||||||||||||  | |||||   |||||||| |  | ||||||||||||||||||||    
24104457 gatggtctaactccaatggaaggcaatggtgatgttactcaagacatataccctcttgtgcaatcaatcatgacgaacttccttcagccctttg 24104364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 53
Target Start/End: Complemental strand, 26903670 - 26903638
Alignment:
21 acctttgtcaacactgaatacaatcacaaacgt 53  Q
    |||||||| ||||||||||||||||||||||||    
26903670 acctttgttaacactgaatacaatcacaaacgt 26903638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 58; Significance: 1e-24; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 20 - 213
Target Start/End: Complemental strand, 3088207 - 3088014
Alignment:
20 aacctttgtcaacactgaatacaatcacaaacgtttgctcaaatcaagaggtgaaaatgcctttgatggtttcgatgattttacctttgagaccatacca 119  Q
    |||||||||||| || |||||||||||||| |||||||| ||||||||||||   ||| |  |||||||||||  |||||||  ||||||||| || | |    
3088207 aacctttgtcaataccgaatacaatcacaaccgtttgcttaaatcaagaggttctaattctcttgatggtttcactgattttgtctttgagactatccaa 3088108  T
120 gatggtttaacaccactagaaggtgatggcgatgttactcaagacataccctctctttctcaatcaataagaaagaacttccttcagccctttg 213  Q
    |||||| |||| ||| | |||||| |||| ||||||| ||||||| |  | ||||||| ||||||| |  ||||||||||| |||| |||||||    
3088107 gatggtctaactccaatggaaggtaatggtgatgttagtcaagacttggcatctctttgtcaatcagttggaaagaacttcattcaaccctttg 3088014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0477 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: scaffold0477
Description:

Target: scaffold0477; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 142 - 211
Target Start/End: Original strand, 3310 - 3379
Alignment:
142 gtgatggcgatgttactcaagacataccctctctttctcaatcaataagaaagaacttccttcagccctt 211  Q
    ||||||| |||||||||||||||||||||||||||  |||||| ||||||| ||| ||| ||||||||||    
3310 gtgatggtgatgttactcaagacataccctctcttgttcaatctataagaacgaatttctttcagccctt 3379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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