View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5945_low_3 (Length: 496)
Name: NF5945_low_3
Description: NF5945
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5945_low_3 |
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| [»] chr4 (6 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 299; Significance: 1e-168; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 28 - 496
Target Start/End: Original strand, 28716453 - 28716915
Alignment:
| Q |
28 |
acacaagagtgagctgtatgtgccaatcaattcagttggtcttannnnnnnctttctctctttatatatatacacatgctacttgttgatgaacaacata |
127 |
Q |
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| T |
28716453 |
acacaagagtgagctgtatgtgcccatcaattcagttggtcttatttttt-ctttctctctttata----tacacatgctacttgttgatgaacaacata |
28716547 |
T |
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| Q |
128 |
ggattaggaggttagaacacaattataagagagaatgaattgttcgggaaataatatagtgaacaagagggtgcaacataagattgaacaaaaacaaact |
227 |
Q |
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| T |
28716548 |
ggattaggaggttagaacacaattataagagagaatgaattgttctggaaataatatagtgaacaagagggtgcaacataagattgaacaaaaacaaact |
28716647 |
T |
|
| Q |
228 |
cgctcatcaatctcacttggtactctctcatgcttactttcacttccttccatgnnnnnnnaatggcctcaatccata-nnnnnnnctttctacaaaaca |
326 |
Q |
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| T |
28716648 |
cgctcatcaatctcacttggtactctctcatgcttactttcacttccttccatgtttttttaatggcctcaatccatattttttttctttctacaaaaca |
28716747 |
T |
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| Q |
327 |
atccatgctaatatagtacgtacgtagcactttttaaatggaatattcatctt--tttcttttaaagttagagatcttccaaattttgtgcggtgaactt |
424 |
Q |
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| T |
28716748 |
atccatgctaatata----gtacgtagtactttttaaatggaatattcatcgtaatttcttttaaagtttgagatcttccaaattttgtgcggtgaactt |
28716843 |
T |
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| Q |
425 |
attaaaagttatttgagttaaatattttttgggttccaattgatatgtaaactcatatgtagaattcatatt |
496 |
Q |
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| T |
28716844 |
attaaaggttatttgagttaaaaaaaattttggtcccaattgatatgtaaactaatatgtagaattcatatt |
28716915 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 221 - 281
Target Start/End: Original strand, 28705045 - 28705105
Alignment:
| Q |
221 |
acaaactcgctcatcaatctcacttggtactctctcatgcttactttcacttccttccatg |
281 |
Q |
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| T |
28705045 |
acaaacttgctcaccaatctcacttggtactctctcacgcttactttcacttccttccatg |
28705105 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 357 - 438
Target Start/End: Original strand, 28711283 - 28711364
Alignment:
| Q |
357 |
tttttaaatggaatattcatctttttcttttaaagttagagatcttccaaattttgtgcggtgaacttattaaaagttattt |
438 |
Q |
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| T |
28711283 |
ttttcaaatggaatattcatcgttttcttttaaattttgagattttccaaaatttgtgcagcgaccttatttaaagttattt |
28711364 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 80 - 186
Target Start/End: Original strand, 28710928 - 28711028
Alignment:
| Q |
80 |
tttctctctttatatatatacacatgctacttgttgatgaacaacataggattaggaggttagaacacaattataagagagaatgaattgttcgggaaat |
179 |
Q |
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| T |
28710928 |
tttctctctctctttatatagacatgctactttttgatgaacaacagaaga------ggttagaacaaaattataagagagaatgaattgttcttcaaat |
28711021 |
T |
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| Q |
180 |
aatatag |
186 |
Q |
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| T |
28711022 |
aatatag |
28711028 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 317 - 438
Target Start/End: Original strand, 28705139 - 28705261
Alignment:
| Q |
317 |
ctacaaaacaatccatgctaatatagtacgtacgtagcactttttaaat-----ggaatattcatctttttcttttaaagttagagatcttccaaatttt |
411 |
Q |
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| T |
28705139 |
ctacaaaacaatccatgctaaaatagtacgta----gtactttttcaaacggaaggaatattcattgttttcttttaaagtttgagattttccaaaatct |
28705234 |
T |
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| Q |
412 |
gtgcggtgaacttattaaaagttattt |
438 |
Q |
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|||| |||| |||||||| |||||||| |
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| T |
28705235 |
gtgcagtgaccttattaatagttattt |
28705261 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 230 - 274
Target Start/End: Original strand, 28711052 - 28711096
Alignment:
| Q |
230 |
ctcatcaatctcacttggtactctctcatgcttactttcacttcc |
274 |
Q |
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| T |
28711052 |
ctcaccaatctcacttggtattctctcacgcttactttcacttcc |
28711096 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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