View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5945_low_5 (Length: 474)
Name: NF5945_low_5
Description: NF5945
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5945_low_5 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 381; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 13 - 458
Target Start/End: Complemental strand, 34036137 - 34035692
Alignment:
| Q |
13 |
aaaataacaatactaacatttaccgttaaaaaatctctaattttcctcgtccatagggcgacacttttctcccatcaagatgttcttcctccaaagaact |
112 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34036137 |
aaaataacaatattaacatttaccgttaaaaaatctctaattttcgtcgtccatcgggcgacacttttctcccatcaagatgttcttcctccaaagaact |
34036038 |
T |
|
| Q |
113 |
tcttcttcttggtttccttcttccaatactccttcagcctgcacttttctccaagatagcatcctcaccattgaaatagctctggtgctaattttactgt |
212 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34036037 |
tcttcttcttggtttccttcttccaatcctccttcagcctgcacttttctccaagatagcatcctcaccattgaaatagctctggtgctaattttactgt |
34035938 |
T |
|
| Q |
213 |
ttagcttcgaaattagcttagtttccttggtcgaagacaccgttgcttcctcctccgcctctgtgtggagcttcttcatgttcttagaaccacatagaaa |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34035937 |
ttagcttcgaaattagcttagtttccttggtcgaagacaccgttgcttcctcctccgcctctgtgtggagcttcttcatgttcttagaaccacatagaaa |
34035838 |
T |
|
| Q |
313 |
agtgatgatggnnnnnnnnnnnnnnnctgaaagaacaacaaatagaattgttgtggttgacatggatgaaaatagaagaagagtgtgcatgttagacaca |
412 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34035837 |
agtgatgatggaaaaaatagaaaaaactgaaagaacaacaaatagaattgttgtggttggcatggatgaaaatagaagaagagtgtgcatgttagacaca |
34035738 |
T |
|
| Q |
413 |
agaagaggcctcgccatgttaacaaattaaattagaggattcaagt |
458 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34035737 |
agaagaggcctcgccatgttaacaaattaaattagaggattcaagt |
34035692 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University