View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5945_low_7 (Length: 345)
Name: NF5945_low_7
Description: NF5945
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5945_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 130; Significance: 3e-67; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 13 - 162
Target Start/End: Original strand, 4238135 - 4238284
Alignment:
| Q |
13 |
aatattacaataacgtaaaatatgaaaccgaaaataaatgaaagctcacacaaaacttttctttaattcaccatagtaaatgcaggagtaatgcaacaca |
112 |
Q |
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| T |
4238135 |
aatattacaacaacgtaaaatatgaaaccgaaaataaatgaaagctcacacaaaacttttctttaattcaccatagtaaatgcaggtgtaatgcaaaaca |
4238234 |
T |
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| Q |
113 |
aaccttattttggttgtgctgcatgtaaatctgcttgatttcacaactaa |
162 |
Q |
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| T |
4238235 |
aaccttattttggttgtgctgtatttaaatctgcttgatttcacaactaa |
4238284 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 239 - 327
Target Start/End: Original strand, 4238357 - 4238445
Alignment:
| Q |
239 |
gtatgaacctctcactgtgaaattcccacatgagaaaatccaaatccaccgtcttatatttaagatcagtaagtaacaccagaagatat |
327 |
Q |
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| T |
4238357 |
gtatgaacctctcactgtgaaattcccacatgagaaaatccaaatccaccgtcttatatttaagatcagtaagtaacaccagaagatat |
4238445 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 50 - 99
Target Start/End: Original strand, 4252465 - 4252514
Alignment:
| Q |
50 |
atgaaagctcacacaaaacttttctttaattcaccatagtaaatgcagga |
99 |
Q |
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| T |
4252465 |
atgaaagttcacacaaaacttttatttaattcagcataatagatgcagga |
4252514 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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