View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5946-Insertion-1 (Length: 1120)

Name: NF5946-Insertion-1
Description: NF5946
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5946-Insertion-1
NF5946-Insertion-1
[»] chr5 (26 HSPs)
chr5 (330-1054)||(13312519-13313256)
chr5 (330-585)||(22169377-22169635)
chr5 (7-135)||(13312125-13312253)
chr5 (130-260)||(13312318-13312448)
chr5 (370-523)||(38521961-38522115)
chr5 (390-585)||(42034739-42034934)
chr5 (400-585)||(35922724-35922910)
chr5 (360-509)||(19621480-19621630)
chr5 (359-585)||(33958911-33959138)
chr5 (355-509)||(43461708-43461863)
chr5 (330-494)||(43262708-43262889)
chr5 (330-497)||(7156000-7156182)
chr5 (433-497)||(30704398-30704462)
chr5 (359-505)||(31189526-31189675)
chr5 (360-455)||(36169394-36169491)
chr5 (774-850)||(22093797-22093873)
chr5 (444-517)||(30045885-30045958)
chr5 (461-585)||(15221618-15221742)
chr5 (455-523)||(2477302-2477370)
chr5 (531-607)||(43262819-43262899)
chr5 (531-585)||(19621591-19621645)
chr5 (360-424)||(15221662-15221727)
chr5 (360-404)||(33958926-33958970)
chr5 (531-585)||(35922644-35922698)
chr5 (360-418)||(36169352-36169410)
chr5 (360-424)||(13312696-13312761)
[»] chr2 (18 HSPs)
chr2 (390-608)||(1400678-1400901)
chr2 (330-585)||(30905982-30906240)
chr2 (316-564)||(43900433-43900685)
chr2 (400-585)||(28527254-28527439)
chr2 (421-587)||(33667328-33667495)
chr2 (360-523)||(45305918-45306082)
chr2 (360-490)||(7378495-7378625)
chr2 (330-424)||(1400689-1400785)
chr2 (532-587)||(30906171-30906226)
chr2 (360-418)||(41212411-41212469)
chr2 (531-585)||(41212430-41212484)
chr2 (628-694)||(41825062-41825128)
chr2 (360-424)||(28527269-28527334)
chr2 (797-896)||(5008933-5009030)
chr2 (628-694)||(20070377-20070442)
chr2 (443-497)||(34175155-34175209)
chr2 (360-424)||(33667413-33667478)
chr2 (771-834)||(31718639-31718702)
[»] scaffold1126 (3 HSPs)
scaffold1126 (364-586)||(138-363)
scaffold1126 (360-421)||(155-217)
scaffold1126 (531-585)||(328-382)
[»] chr6 (28 HSPs)
chr6 (316-585)||(3222337-3222610)
chr6 (359-585)||(10304632-10304859)
chr6 (360-507)||(33815025-33815174)
chr6 (343-585)||(2834884-2835140)
chr6 (360-573)||(22608312-22608529)
chr6 (412-581)||(138650-138820)
chr6 (412-581)||(146671-146841)
chr6 (345-515)||(3620761-3620932)
chr6 (413-587)||(9068411-9068585)
chr6 (771-896)||(6891192-6891315)
chr6 (459-608)||(2430511-2430664)
chr6 (330-517)||(23595074-23595254)
chr6 (360-404)||(30056072-30056116)
chr6 (433-496)||(9474656-9474718)
chr6 (353-424)||(2430650-2430721)
chr6 (360-420)||(10304647-10304707)
chr6 (360-407)||(11108116-11108163)
chr6 (531-584)||(11108102-11108155)
chr6 (459-523)||(7706862-7706926)
chr6 (330-424)||(9068503-9068599)
chr6 (359-410)||(9068343-9068394)
chr6 (330-424)||(7706779-7706876)
chr6 (531-581)||(7915717-7915767)
chr6 (535-585)||(22608297-22608347)
chr6 (531-581)||(24386335-24386385)
chr6 (531-585)||(30056057-30056111)
chr6 (368-424)||(138669-138726)
chr6 (368-424)||(146690-146747)
[»] chr8 (25 HSPs)
chr8 (360-585)||(38606759-38606986)
chr8 (360-523)||(5321955-5322120)
chr8 (366-586)||(15714625-15714847)
chr8 (330-495)||(29367076-29367243)
chr8 (334-587)||(5573704-5573960)
chr8 (400-517)||(1240900-1241017)
chr8 (330-523)||(1251470-1251665)
chr8 (345-586)||(26493267-26493507)
chr8 (330-517)||(31596715-31596905)
chr8 (330-498)||(31273580-31273751)
chr8 (774-866)||(36129642-36129733)
chr8 (638-832)||(40209934-40210131)
chr8 (771-846)||(5894933-5895008)
chr8 (360-497)||(15233169-15233318)
chr8 (370-453)||(33286178-33286263)
chr8 (459-523)||(26914684-26914748)
chr8 (433-497)||(28700176-28700240)
chr8 (461-516)||(24575907-24575962)
chr8 (640-694)||(43093348-43093401)
chr8 (433-509)||(6809821-6809898)
chr8 (420-517)||(24537981-24538078)
chr8 (345-478)||(32959496-32959631)
chr8 (772-813)||(9015272-9015313)
chr8 (360-424)||(15714641-15714706)
chr8 (532-585)||(24576180-24576233)
[»] chr7 (30 HSPs)
chr7 (359-585)||(18312777-18313004)
chr7 (360-587)||(31303404-31303632)
chr7 (359-507)||(20556716-20556866)
chr7 (360-581)||(21589574-21589797)
chr7 (357-584)||(21548401-21548629)
chr7 (378-585)||(4290796-4291004)
chr7 (345-578)||(5083731-5083964)
chr7 (412-587)||(28804916-28805094)
chr7 (359-518)||(22740657-22740818)
chr7 (360-578)||(15958251-15958472)
chr7 (421-497)||(46943761-46943839)
chr7 (628-832)||(45916517-45916725)
chr7 (330-404)||(28804902-28804977)
chr7 (362-497)||(32964706-32964852)
chr7 (360-424)||(5083739-5083803)
chr7 (330-424)||(22033158-22033253)
chr7 (360-422)||(31303553-31303615)
chr7 (451-518)||(5174910-5174977)
chr7 (330-404)||(22032981-22033055)
chr7 (360-424)||(15958259-15958324)
chr7 (360-424)||(21548550-21548615)
chr7 (360-424)||(21589721-21589786)
chr7 (627-684)||(36441968-36442025)
chr7 (531-583)||(15958433-15958485)
chr7 (533-585)||(22033186-22033238)
chr7 (531-608)||(28805142-28805223)
chr7 (531-587)||(32964875-32964931)
chr7 (414-455)||(2887188-2887230)
chr7 (360-425)||(32964848-32964914)
chr7 (360-424)||(28805116-28805181)
[»] chr3 (44 HSPs)
chr3 (330-585)||(3823571-3823829)
chr3 (330-581)||(3785882-3786135)
chr3 (359-516)||(42637956-42638115)
chr3 (364-586)||(26308570-26308794)
chr3 (363-608)||(19280152-19280402)
chr3 (400-586)||(31545608-31545795)
chr3 (360-516)||(1705670-1705826)
chr3 (359-585)||(4169039-4169255)
chr3 (362-515)||(44080209-44080364)
chr3 (360-517)||(19624257-19624415)
chr3 (343-509)||(27079303-27079470)
chr3 (343-509)||(27085100-27085267)
chr3 (366-585)||(5341833-5342054)
chr3 (400-587)||(22432322-22432510)
chr3 (412-523)||(42481304-42481416)
chr3 (360-498)||(9710742-9710876)
chr3 (421-497)||(27335402-27335479)
chr3 (316-466)||(11509808-11509962)
chr3 (420-507)||(13358101-13358189)
chr3 (433-575)||(39126190-39126333)
chr3 (446-570)||(11501309-11501433)
chr3 (333-482)||(23163252-23163404)
chr3 (433-498)||(34627317-34627382)
chr3 (360-509)||(27707625-27707775)
chr3 (628-757)||(38140167-38140299)
chr3 (421-497)||(27365008-27365085)
chr3 (345-421)||(27040683-27040760)
chr3 (360-424)||(31545714-31545779)
chr3 (360-424)||(3786060-3786124)
chr3 (360-424)||(3823750-3823814)
chr3 (433-497)||(27326047-27326111)
chr3 (433-497)||(27332284-27332348)
chr3 (533-585)||(44080192-44080244)
chr3 (548-585)||(9710854-9710891)
chr3 (330-424)||(33488214-33488313)
chr3 (628-692)||(31814202-31814265)
chr3 (531-607)||(3823561-3823641)
chr3 (371-410)||(11501270-11501309)
chr3 (531-585)||(11501244-11501298)
chr3 (531-585)||(11509839-11509893)
chr3 (459-497)||(18733538-18733576)
chr3 (438-488)||(23163787-23163837)
chr3 (628-670)||(37052195-37052237)
chr3 (363-436)||(41571797-41571871)
[»] chr4 (33 HSPs)
chr4 (359-523)||(16583546-16583712)
chr4 (372-587)||(1966764-1966979)
chr4 (360-523)||(9809025-9809190)
chr4 (359-585)||(42908519-42908745)
chr4 (360-585)||(17633273-17633499)
chr4 (345-502)||(55666840-55666997)
chr4 (628-898)||(34940974-34941244)
chr4 (335-509)||(35544427-35544603)
chr4 (364-506)||(8740801-8740945)
chr4 (360-585)||(9810711-9810941)
chr4 (415-608)||(14351069-14351267)
chr4 (316-518)||(19596685-19596893)
chr4 (401-517)||(33249615-33249732)
chr4 (774-907)||(6561194-6561324)
chr4 (359-498)||(33179777-33179918)
chr4 (360-507)||(2433667-2433811)
chr4 (774-891)||(1026165-1026280)
chr4 (774-907)||(36697976-36698106)
chr4 (358-421)||(1966778-1966841)
chr4 (433-585)||(24669210-24669351)
chr4 (330-394)||(25007626-25007690)
chr4 (330-404)||(19596902-19596977)
chr4 (531-585)||(17633460-17633514)
chr4 (360-425)||(24669270-24669336)
chr4 (360-424)||(42908666-42908730)
chr4 (400-436)||(1966979-1967015)
chr4 (360-404)||(17633288-17633332)
chr4 (330-404)||(9810882-9810957)
chr4 (400-454)||(20874825-20874880)
chr4 (900-991)||(6561085-6561184)
chr4 (628-669)||(6561417-6561458)
chr4 (368-424)||(14351160-14351217)
chr4 (628-669)||(36698204-36698245)
[»] chr1 (28 HSPs)
chr1 (400-585)||(29677017-29677202)
chr1 (360-585)||(34490140-34490366)
chr1 (368-584)||(25238436-25238653)
chr1 (359-585)||(34364183-34364408)
chr1 (359-585)||(38951854-38952085)
chr1 (316-585)||(5831438-5831710)
chr1 (400-573)||(29167754-29167926)
chr1 (400-583)||(42604210-42604394)
chr1 (421-496)||(2996025-2996101)
chr1 (771-896)||(8262478-8262604)
chr1 (364-497)||(9468064-9468199)
chr1 (360-496)||(517433-517570)
chr1 (459-585)||(2569960-2570086)
chr1 (344-460)||(9929834-9929951)
chr1 (466-585)||(9929662-9929781)
chr1 (360-424)||(5855057-5855122)
chr1 (638-896)||(18833542-18833801)
chr1 (531-587)||(5855228-5855284)
chr1 (360-424)||(29677032-29677096)
chr1 (330-404)||(13350903-13350978)
chr1 (361-422)||(38244801-38244863)
chr1 (360-421)||(29167757-29167818)
chr1 (771-850)||(24888335-24888414)
chr1 (360-421)||(5831633-5831695)
chr1 (360-425)||(5855201-5855267)
chr1 (531-585)||(13351009-13351063)
chr1 (360-421)||(34490289-34490351)
chr1 (323-387)||(28499662-28499727)
[»] scaffold0251 (1 HSPs)
scaffold0251 (359-514)||(10617-10774)
[»] scaffold0123 (1 HSPs)
scaffold0123 (360-517)||(24020-24180)
[»] scaffold0044 (1 HSPs)
scaffold0044 (693-898)||(58339-58542)
[»] scaffold0126 (1 HSPs)
scaffold0126 (330-447)||(21549-21667)
[»] scaffold0043 (1 HSPs)
scaffold0043 (421-497)||(87035-87112)
[»] scaffold0024 (1 HSPs)
scaffold0024 (421-497)||(112158-112235)
[»] scaffold0216 (1 HSPs)
scaffold0216 (774-894)||(28909-29027)
[»] scaffold0291 (1 HSPs)
scaffold0291 (421-497)||(5870-5947)
[»] scaffold0284 (1 HSPs)
scaffold0284 (774-850)||(6180-6256)
[»] scaffold0578 (1 HSPs)
scaffold0578 (797-896)||(2647-2744)
[»] scaffold0213 (2 HSPs)
scaffold0213 (361-423)||(24932-24995)
scaffold0213 (360-403)||(24754-24797)


Alignment Details
Target: chr5 (Bit Score: 434; Significance: 0; HSPs: 26)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 434; E-Value: 0
Query Start/End: Original strand, 330 - 1054
Target Start/End: Original strand, 13312519 - 13313256
Alignment:
Q  330 ttaatgtgtacacc-ttttgtactatttttgaaaatttcagttaaccaaatatatggtctatgtgaacacatttttcagttgggtgaccactatttagaa 428  Q
    |||||||||||||| |||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  13312519 ttaatgtgtacacccttttgtactattttcgaaaatttcaattaaccaaatatatggtctatgtgaacacatttttcagttgggtgaccgctatttagaa 13312618  T
Q  429 gctgaaaa-tgtggtcacgcaactaaaatgcgcgtgaccattatttttccacttagttaaccaaataaattatggaaaaataatggtcacgtaactnnnn 527  Q
    |||||||| ||||||||||||||||||||||||||| | | ||||||||||||||||||||||||||||||||||||||||| |||||||| ||||        
T  13312619 gctgaaaaatgtggtcacgcaactaaaatgcgcgtggcaactatttttccacttagttaaccaaataaattatggaaaaatagtggtcacgcaactaaaa 13312718  T
Q  528 nnntgtggtcacacagatcgtatatatggttaactgaaatttttcagagtggtacaaaagtacacgttaagggtgtctacccttaatgtaaaatagaagg 627  Q
       |||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  13312719 aaatgtggtcacacaaatcatatatatggttaactgaaatttttcagagtggtacaaaagtacacattaagggtgtctacccttaatgtaaaatagaagg 13312818  T
Q  628 gtttgtttcgaggtaagaaattacattccttggaatgatattctcaggaataatatttataggaat---attcctacccacgtgttttgtaaaaatttag 724  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||    
T  13312819 gtttgtttcgagggaagaaattacattccttggaatgatattctcaggaataatatttataggaataacattcctacccacgtgttttgtaaaaatttag 13312918  T
Q  725 atttcttgggaacgttttagaaatgatttaattnnnnnnnnnnnnntggaaataaatgtgagtagtagtaagaatttatagcaagttgagttctattccc 824  Q
    |||||||||||||||||||||||||||||||||             ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13312919 atttcttgggaacgttttagaaatgatttaattaaaaaaataaaaatggaaataaatgtgagtagtagtaagaatttatagcaagttgagttctattccc 13313018  T
Q  825 atgggaatgtagaattctcatccttttaagtatgggaataaggaatagaagaaatcatgtgtaaataacatttcctgggaataaattttcaaaacttgaa 924  Q
    ||||||||||| ||||  ||||| |||||| ||| |||||| |||||||||||||||||||||||||||| ||| |||||| ||||||||||||||||||    
T  13313019 atgggaatgtaaaatttccatcc-tttaagcatgtgaataa-gaatagaagaaatcatgtgtaaataaca-ttcatgggaacaaattttcaaaacttgaa 13313115  T
Q  925 --caacat--ggatgttgcatttcc-atctcacatttc--ggaatcatattataaaccttg-aacaaacacacccg-atga--tagactac-tat-ctac 1011  Q
       |||||  | ||||||||||||| ||||||||||||  ||||||||||||||||||||| |||||||||||||| ||||  || ||||| ||| ||||    
T  13313116 acaaacatgagaatgttgcatttccaatctcacatttccgggaatcatattataaaccttgaaacaaacacacccgaatgaattaaactacttatcctac 13313215  T
Q  1012 ttcttcctctcccaaatacgtctgacgacgtgttacacatgca 1054  Q
    ||||  |||||||||||| ||||||| ||||| ||||||||||    
T  13313216 ttct--ctctcccaaatatgtctgacaacgtggtacacatgca 13313256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 126; E-Value: 2e-64
Query Start/End: Original strand, 330 - 585
Target Start/End: Original strand, 22169377 - 22169635
Alignment:
Q  330 ttaatgtgtacacctt-ttgtactatttttgaaaatttcagttaaccaaatatatggtctatgtgaacacattttt-cagttgggtgaccactatttaga 427  Q
    |||||||||||||| | |||||  |||||||||||||||||||||| ||||||||||  ||||||| ||||||||| |||||| |||||||||||||| |    
T  22169377 ttaatgtgtacaccctattgtatcatttttgaaaatttcagttaactaaatatatggaatatgtgatcacattttttcagttgcgtgaccactatttata 22169476  T
Q  428 agctgaaaa-tgtggtcacgcaactaaaatgcgcgtgaccattatttttccacttagttaaccaaataaattatggaaaaataatggtcacgtaactnnn 526  Q
    || |||||| ||||||||||||||||||||||||||||||| |||||||| || |||||||||||||||||| || |||||||||||||||| ||||       
T  22169477 agttgaaaaatgtggtcacgcaactaaaatgcgcgtgaccactatttttcaacgtagttaaccaaataaattttgaaaaaataatggtcacgcaactaaa 22169576  T
Q  527 nnnntgtggtcacacagatcgtatatatggttaactgaaatttttcagagtggtacaaa 585  Q
        |||||||||||| ||| || || ||||||||| ||| ||||||||||||||||||    
T  22169577 aaaatgtggtcacacatatcataaatttggttaactaaaaattttcagagtggtacaaa 22169635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 117; E-Value: 5e-59
Query Start/End: Original strand, 7 - 135
Target Start/End: Original strand, 13312125 - 13312253
Alignment:
Q  7 cagtttttgtccagatcacagacatggattggtagatgccacagacaagacagattatcaactgtcattgtcattttcccaactgggatatataactgat 106  Q
    ||||||||||||||||||||||||||||||| |||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  13312125 cagtttttgtccagatcacagacatggattgatagatgccacagacgagacacattatcaactgtcattgtcattttcccaactgggatatataactgat 13312224  T
Q  107 ggttctgtgaatatggtgacaacatgcag 135  Q
    |||||||||||||||||||||||||||||    
T  13312225 ggttctgtgaatatggtgacaacatgcag 13312253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 111; E-Value: 2e-55
Query Start/End: Original strand, 130 - 260
Target Start/End: Original strand, 13312318 - 13312448
Alignment:
Q  130 atgcagtgatcaaattagcaatagctcgtgtgcactatttgtaattgcgtttgtgaaccatccttcttttagagcctttataatgatgatcttcattttg 229  Q
    |||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||    
T  13312318 atgcagtgatcaaattagtaatagcttgtgtgcactatttgtaattgcgtttgtgaaccatccttcttttagagtctttataatgatgatcttctttttg 13312417  T
Q  230 ttgctaacaaattttagcgtgtggatctggg 260  Q
    ||||||||||||||||| |||||||||||||    
T  13312418 ttgctaacaaattttagtgtgtggatctggg 13312448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 370 - 523
Target Start/End: Complemental strand, 38522115 - 38521961
Alignment:
Q  370 ttaaccaaatatatggtctatgtgaacacattttt-cagttgggtgaccactatttagaagctgaaaa-tgtggtcacgcaactaaaatgcgcgtgacca 467  Q
    ||||||||||||||||||||||||| ||||||||| || |||  |||||||||||||||||||||||| ||||||||||| | |||||||||||||||||    
T  38522115 ttaaccaaatatatggtctatgtgaccacattttttcaattgcatgaccactatttagaagctgaaaaatgtggtcacgcga-taaaatgcgcgtgacca 38522017  T
Q  468 ttatttttccacttagttaaccaaataaattatggaaaaataatggtcacgtaact 523  Q
     ||||||| |||||||||||| ||||||||| | ||||| ||||||||||| ||||    
T  38522016 ctatttttacacttagttaactaaataaattctagaaaactaatggtcacgcaact 38521961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 390 - 585
Target Start/End: Original strand, 42034739 - 42034934
Alignment:
Q  390 tgtgaacacatttttcagttgggtgaccactatttagaagctgaaaa-tgtggtcacgcaactaaaatgcgcgtgaccattatttttccacttagttaac 488  Q
    ||||| ||||||||||||||| |||||  ||||| |||||||||||| |||||||||||||||||||||| |||||||| ||||||||||||||||||||    
T  42034739 tgtgaccacatttttcagttgcgtgactcctatt-agaagctgaaaaatgtggtcacgcaactaaaatgcacgtgaccactatttttccacttagttaac 42034837  T
Q  489 caaataaattatggaaaaataatggtcacgtaactnnnnnnntgtggtcacacagatcgtatatatggttaactgaaatttttcagagtggtacaaa 585  Q
    |||||||||| ||||||| || |||||||| ||||       |||| | ||||| | | ||||| || | ||||||||||||| |||||||||||||    
T  42034838 caaataaattttggaaaactagtggtcacgcaactaaaaaaatgtgattacacataccatatatttgatcaactgaaattttttagagtggtacaaa 42034934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 82; E-Value: 4e-38
Query Start/End: Original strand, 400 - 585
Target Start/End: Original strand, 35922724 - 35922910
Alignment:
Q  400 tttttcagttgggtgaccactatttagaagctgaaaa-tgtggtcacgcaactaaaatgcgcgtgaccattatttttccacttagttaaccaaataaatt 498  Q
    ||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||  |||||| |||||||||| |||||||||||||||||||    
T  35922724 tttttcagttgcgtgaccactatttagaagctgaaaaatgtggtcacgcaactaaaatgcgtatgaccactatttttccatttagttaaccaaataaatt 35922823  T
Q  499 atggaaaaataatggtcacgtaactnnnnnnntgtggtcacacagatcgtatatatggttaactgaaatttttcagagtggtacaaa 585  Q
     || ||||||| |||||| | ||||       | ||||| |||||| | || || ||||||||| |||||||||| |||| ||||||    
T  35922824 ctgaaaaaatagtggtcatgcaacttaaaaaatatggtcccacagaccataaatttggttaacttaaatttttcaaagtgatacaaa 35922910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 77; E-Value: 4e-35
Query Start/End: Original strand, 360 - 509
Target Start/End: Complemental strand, 19621630 - 19621480
Alignment:
Q  360 aaaatttcagttaaccaaatatatggtctatgtgaacacatttttc-agttgggtgaccactattt----agaagctgaaaatgtggtcacgcaactaaa 454  Q
    ||||||||||||||||||||||||||| | ||||| |||||||||| | ||| |||||||||||||    ||||    |||| |||||||||||||||||    
T  19621630 aaaatttcagttaaccaaatatatggtatgtgtgaccacatttttccatttgcgtgaccactatttttccagaa----aaaacgtggtcacgcaactaaa 19621535  T
Q  455 atgcgcgtgaccattatttttccacttagttaaccaaataaattatggaaaaata 509  Q
    ||| ||||||||| |||||||||||||||||||||||||||||| ||||||||||    
T  19621534 atgtgcgtgaccactatttttccacttagttaaccaaataaattctggaaaaata 19621480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 359 - 585
Target Start/End: Complemental strand, 33959138 - 33958911
Alignment:
Q  359 gaaaatttcagttaaccaaatatatggtctatgtgaacacattttt-cagttgggtgaccactatttagaagctgaaaa-tgtggtcacgcaactaaaat 456  Q
    ||||| |||||||||| ||||||||  |||||||||  |||||||| ||| || ||||||||||||||||| ||||||| | ||||||||||||||||||    
T  33959138 gaaaacttcagttaacaaaatatata-tctatgtgattacattttttcagctgcgtgaccactatttagaaactgaaaaatatggtcacgcaactaaaat 33959040  T
Q  457 gcgcgtgaccattatttttccacttagttaaccaaataaattatggaaaaataatggtcacgtaactnnnnnnntgtggtcacacagatcgtatatatgg 556  Q
     || || |||| ||||||||||||||||| |||||||||||| |||||||||  |||||| | | ||       |||| | ||| ||| | ||||| |||    
T  33959039 ccgagtaaccactatttttccacttagttgaccaaataaattctggaaaaattgtggtcatgcagctaaaaaaatgtgattacatagaccatatatttgg 33958940  T
Q  557 ttaactgaaatttttcagagtggtacaaa 585  Q
    |||| ||||||||||||||||||||||||    
T  33958939 ttaagtgaaatttttcagagtggtacaaa 33958911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 73; E-Value: 9e-33
Query Start/End: Original strand, 355 - 509
Target Start/End: Complemental strand, 43461863 - 43461708
Alignment:
Q  355 ttttgaaaatttcagttaaccaaatatatggtctatgtgaacaca-tttttcagttgggtgaccactatttagaagctg-aaaatgtggtcacgcaacta 452  Q
    ||||||||||||||||||| |||||||||||||| || || || | ||||||||||| |||||||||||||||||| || |||||  |||||||||||||    
T  43461863 ttttgaaaatttcagttaatcaaatatatggtctttg-gaccatattttttcagttgtgtgaccactatttagaagttgaaaaatacggtcacgcaacta 43461765  T
Q  453 aaatgcgcgtgaccattatttttccacttagttaaccaaataaattatggaaaaata 509  Q
    |||| | ||| |||| |||||||||||||||| ||||||||||||| || |||||||    
T  43461764 aaattcacgtaaccactatttttccacttagtaaaccaaataaattctgaaaaaata 43461708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 330 - 494
Target Start/End: Complemental strand, 43262889 - 43262708
Alignment:
Q  330 ttaatgtgtacacct-tttgtactatttttgaaaatttcagttaaccaaatatatggtctatgtgaacacattt-ttcagttgggtgaccactattt--- 424  Q
    ||||||||||||||  ||||||||| |||  ||||||||||||||||||||||||||||| ||||| ||||||| || ||||  ||||| |||||||       
T  43262889 ttaatgtgtacacccctttgtactactttgaaaaatttcagttaaccaaatatatggtctgtgtgaccacatttgtttagttatgtgactactatttttc 43262790  T
Q  425 --------agaagctgaa----aatgtggtcacgcaactaaaatgcgcgtgaccattatttttccacttagttaaccaaata 494  Q
            | ||||||||    ||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||    
T  43262789 caacatttaaaagctgaagaaaaatgtggtcacacaactaaaatgcgcgtgaccactatttttccacttagttaaccaaata 43262708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 330 - 497
Target Start/End: Original strand, 7156000 - 7156182
Alignment:
Q  330 ttaatgtgtacacctttt-gtactatttttgaaaatttcagttaaccaaatatatggtctatgtgaacacattttt-cagttgggtgaccactattt--- 424  Q
    |||||||||||| ||||| |||| | ||| ||||||||||||||| |||||||||||| ||| ||| ||||||||| |||||   ||||||||||||       
T  7156000 ttaatgtgtacatctttttgtaccactttagaaaatttcagttaatcaaatatatggtttatatgatcacattttttcagttatatgaccactatttttt 7156099  T
Q  425 ---------agaagctgaaaa-tgtggtcacgcaactaaaatgcgcgtgaccattatttttccacttagttaaccaaataaat 497  Q
             |||||||||||| |||| || ||||||||||||  |||||||||||||||||||||||| ||||||||||||||    
T  7156100 tcagaatttagaagctgaaaaatgtgatcgcgcaactaaaatatgcgtgaccattatttttccacttaattaaccaaataaat 7156182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 53; E-Value: 8e-21
Query Start/End: Original strand, 433 - 497
Target Start/End: Complemental strand, 30704462 - 30704398
Alignment:
Q  433 aaaatgtggtcacgcaactaaaatgcgcgtgaccattatttttccacttagttaaccaaataaat 497  Q
    ||||||||||| | ||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  30704462 aaaatgtggtcgcacaactaaaatgcgcgtgaccactatttttccacttagttaaccaaataaat 30704398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 53; E-Value: 8e-21
Query Start/End: Original strand, 359 - 505
Target Start/End: Original strand, 31189526 - 31189675
Alignment:
Q  359 gaaaatttcagttaaccaaatatatggtctatgtgaacacattttt---cagttgggtgaccactatttagaagctgaaaa-tgtggtcacgcaactaaa 454  Q
    ||||||||||||||||||||||||| || | ||||| |||||||||   || |||  |||  ||||||||||||||||||| |||| |||||||||||||    
T  31189526 gaaaatttcagttaaccaaatatatagtatgtgtgaccacatttttgtccaattgcatgattactatttagaagctgaaaaatgtgatcacgcaactaaa 31189625  T
Q  455 atgcgcgtgaccattatttttccacttagttaaccaaataaattatggaaa 505  Q
    |||   ||||||| || |||||||||| ||||| |||||||||| ||||||    
T  31189626 atgtttgtgaccacta-ttttccacttggttaatcaaataaattctggaaa 31189675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 50; E-Value: 5e-19
Query Start/End: Original strand, 360 - 455
Target Start/End: Complemental strand, 36169491 - 36169394
Alignment:
Q  360 aaaatttcagttaaccaaatatatggtctatgtgaacacatt-tttcagttgggtgaccactatttagaagctg-aaaatgtggtcacgcaactaaaa 455  Q
    |||||||||| | | |||||||||||| | ||||| |||||| ||||||||| ||||||||||||||||||||| ||||| |||||||||||||||||    
T  36169491 aaaatttcagctgatcaaatatatggtatgtgtgaccacattctttcagttgcgtgaccactatttagaagctgaaaaatatggtcacgcaactaaaa 36169394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 774 - 850
Target Start/End: Complemental strand, 22093873 - 22093797
Alignment:
Q  774 aaataaatgtgagtagtagtaagaatttatagcaagttgagttctattcccatgggaatgtagaattctcatccttt 850  Q
    |||||||||| ||| |||||||||||||||||||||||||||| |||||| ||||||||||   |||||||||||||    
T  22093873 aaataaatgttagtggtagtaagaatttatagcaagttgagttttattccgatgggaatgtcagattctcatccttt 22093797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 444 - 517
Target Start/End: Original strand, 30045885 - 30045958
Alignment:
Q  444 acgcaactaaaatgcgcgtgaccattatttttccacttagttaaccaaataaattatggaaaaataatggtcac 517  Q
    ||||||||||||| |||||||||| |||||||||| ||| |||||||||||||||  |  ||||||||||||||    
T  30045885 acgcaactaaaatacgcgtgaccactatttttccatttaattaaccaaataaattcggtgaaaataatggtcac 30045958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 461 - 585
Target Start/End: Original strand, 15221618 - 15221742
Alignment:
Q  461 gtgaccattatttttccacttagttaaccaaataaattatggaaaaataatggtcacgtaactnnnnnnntgtggtcacacagatcgtatatatggttaa 560  Q
    ||||||| | |||||||||||| ||||| ||||||||| || ||||||| |||||||  || |       |||||||||||||| | ||||| | |||||    
T  15221618 gtgaccactctttttccacttaattaactaaataaattctgaaaaaatagtggtcacacaattaaaaaaatgtggtcacacagaccatatatttagttaa 15221717  T
Q  561 ctgaaatttttcagagtggtacaaa 585  Q
    ||||||||||||||| || ||||||    
T  15221718 ctgaaatttttcagaatgatacaaa 15221742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 455 - 523
Target Start/End: Original strand, 2477302 - 2477370
Alignment:
Q  455 atgcgcgtgaccattatttttccacttagttaaccaaataaattatggaaaaataatggtcacgtaact 523  Q
    ||||||||| ||| |||||||| ||||||||||||||||||||| || ||||||| ||| |||| ||||    
T  2477302 atgcgcgtggccactatttttcgacttagttaaccaaataaattctgtaaaaatagtggccacgcaact 2477370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 531 - 607
Target Start/End: Original strand, 43262819 - 43262899
Alignment:
Q  531 tgtggtcacacagatcgtatatatggttaactgaaatttttcagagtggtacaaa----agtacacgttaagggtgtctac 607  Q
    |||||||||||||| | ||||| |||||||||||||||||||| ||| |||||||     |||||| ||||||||||||||    
T  43262819 tgtggtcacacagaccatatatttggttaactgaaatttttcaaagtagtacaaaggggtgtacacattaagggtgtctac 43262899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 531 - 585
Target Start/End: Original strand, 19621591 - 19621645
Alignment:
Q  531 tgtggtcacacagatcgtatatatggttaactgaaatttttcagagtggtacaaa 585  Q
    |||||||||||| | | ||||| |||||||||||||||||||||| |||||||||    
T  19621591 tgtggtcacacataccatatatttggttaactgaaatttttcagaatggtacaaa 19621645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 360 - 424
Target Start/End: Complemental strand, 15221727 - 15221662
Alignment:
Q  360 aaaatttcagttaaccaaatatatggtctatgtgaacaca-tttttcagttgggtgaccactattt 424  Q
    ||||||||||||||| ||||||||||||| ||||| |||| ||||| | ||| |||||||||||||    
T  15221727 aaaatttcagttaactaaatatatggtctgtgtgaccacatttttttaattgtgtgaccactattt 15221662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 360 - 404
Target Start/End: Original strand, 33958926 - 33958970
Alignment:
Q  360 aaaatttcagttaaccaaatatatggtctatgtgaacacattttt 404  Q
    ||||||||| ||||||||||||||||||||||| | |||||||||    
T  33958926 aaaatttcacttaaccaaatatatggtctatgtaatcacattttt 33958970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 531 - 585
Target Start/End: Complemental strand, 35922698 - 35922644
Alignment:
Q  531 tgtggtcacacagatcgtatatatggttaactgaaatttttcagagtggtacaaa 585  Q
    |||||||||||| | | ||||| || |||||||||||||||||||||| ||||||    
T  35922698 tgtggtcacacataccatatatttgattaactgaaatttttcagagtgatacaaa 35922644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 360 - 418
Target Start/End: Original strand, 36169352 - 36169410
Alignment:
Q  360 aaaatttcagttaaccaaatatatggtctatgtgaacacatttttcagttgggtgacca 418  Q
    ||||||| |||||||||||||||||||   ||||| ||||||||| ||||| |||||||    
T  36169352 aaaattttagttaaccaaatatatggtaggtgtgaccacattttttagttgcgtgacca 36169410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 360 - 424
Target Start/End: Complemental strand, 13312761 - 13312696
Alignment:
Q  360 aaaatttcagttaaccaaatatatggtctatgtgaacaca-tttttcagttgggtgaccactattt 424  Q
    ||||||||||||||||| ||||||| | | ||||| |||| ||||| ||||| |||||||||||||    
T  13312761 aaaatttcagttaaccatatatatgatttgtgtgaccacatttttttagttgcgtgaccactattt 13312696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 122; Significance: 5e-62; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 122; E-Value: 5e-62
Query Start/End: Original strand, 390 - 608
Target Start/End: Complemental strand, 1400901 - 1400678
Alignment:
Q  390 tgtgaacacatttttcagttgggtgaccactatttagaagctgaaaa-tgtggtcacgcaactaaaatgcgcgtgaccattatttttccacttagttaac 488  Q
    ||||| ||||||||||||||| ||||||||||||||||||||||||| ||||||||| |||| ||||||||||||| || ||||||||||||||||||||    
T  1400901 tgtgaccacatttttcagttgcgtgaccactatttagaagctgaaaaatgtggtcacacaacaaaaatgcgcgtgatcactatttttccacttagttaac 1400802  T
Q  489 caaataaattatggaaaaataatggtcacgtaactnnnnnnntgtggtcacacagatcgtatatatggttaactgaaatttttcagagtggtacaaaa-- 586  Q
    ||||||||||||||||||||| |||||||| ||||       |||||||||||| | | ||||| |||||||||||||||||||||| ||||||||||      
T  1400801 caaataaattatggaaaaatagtggtcacgcaacttaaaaaatgtggtcacacataccatatatttggttaactgaaatttttcagattggtacaaaagg 1400702  T
Q  587 --gtacacgttaagggtgtctacc 608  Q
      |||||| |||||||||||||||    
T  1400701 gtgtacacattaagggtgtctacc 1400678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 110; E-Value: 7e-55
Query Start/End: Original strand, 330 - 585
Target Start/End: Complemental strand, 30906240 - 30905982
Alignment:
Q  330 ttaatgtgtacacc-ttttgtactatttttgaaaatttcagttaaccaaatatatggtctatgtgaacac-atttttcagttgggtgaccactatttaga 427  Q
    |||||||||||||| |||||||| | | |  |||||||||||||||||||||||||||||  |||| ||| |||||||||||  |||||||||||||| |    
T  30906240 ttaatgtgtacacccttttgtaccactctgaaaaatttcagttaaccaaatatatggtctgcgtgaccaccatttttcagtttcgtgaccactatttaaa 30906141  T
Q  428 agctgaaaa-tgtggtcacgcaactaaaatgcgcgtgaccattatttttccacttagttaaccaaataaattatggaaaaataatggtcacgtaactnnn 526  Q
     |||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||| ||| |||||||  ||||       
T  30906140 tgctgaaaaatgtggtcacgcaactaaaatgcgcgtgaccactatttttccacttagttaagcaaataaattatggaaacatagtggtcacacaactaaa 30906041  T
Q  527 nnnntgtggtcacacagatcgtatatatggttaactgaaatttttcagagtggtacaaa 585  Q
        ||||||||||||||   ||||| ||||||||| ||| |||||||| || ||||||    
T  30906040 taaatgtggtcacacagacaatatatctggttaactaaaaattttcagaatgttacaaa 30905982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 96; E-Value: 2e-46
Query Start/End: Original strand, 316 - 564
Target Start/End: Original strand, 43900433 - 43900685
Alignment:
Q  316 gattgatagacacgtt-aatgtgtacacc-ttttgtactatttttgaaaatttcagttaaccaaatatatggtctatgtgaacacattttt-cagttggg 412  Q
    ||||||||||||| || |||||||| | | |||||||| | | | ||||||||||| |||| ||||||||||||| ||||| ||||||||| |||||| |    
T  43900433 gattgatagacacttttaatgtgtagatcattttgtaccactctcgaaaatttcaggtaactaaatatatggtctgtgtgatcacattttttcagttgtg 43900532  T
Q  413 tgaccactatttagaagctgaaaa-tgtggtcacgcaactaaaatgcgcgtgaccattatttttccacttagttaaccaaataaattatggaaaaataat 511  Q
    |||||||||||||||||||||||| |||||||||||||||||||||| |||||||| |||||||| | ||||||||||||||||||| || |||||||      
T  43900533 tgaccactatttagaagctgaaaaatgtggtcacgcaactaaaatgcacgtgaccactatttttctatttagttaaccaaataaattctgaaaaaatagg 43900632  T
Q  512 ggtcacgtaactnnnnnnntgtggtcacacagatcgtatatatggttaactga 564  Q
    ||||||| || |       |||| ||||||| ||| ||||| |||||||||||    
T  43900633 ggtcacgcaattaaaaaaatgtgatcacacaaatcatatatttggttaactga 43900685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 82; E-Value: 4e-38
Query Start/End: Original strand, 400 - 585
Target Start/End: Complemental strand, 28527439 - 28527254
Alignment:
Q  400 tttttcagttgggtgaccactatttagaagctg-aaaatgtggtcacgcaactaaaatgcgcgtgaccattatttttccacttagttaaccaaataaatt 498  Q
    ||||| ||||| |||||||  |||||||||||| ||||||| |||||| |||||| ||||| ||||||| |||||||||| |||||||||||||||||||    
T  28527439 ttttttagttgcgtgaccataatttagaagctggaaaatgttgtcacg-aactaacatgcgtgtgaccactatttttccaattagttaaccaaataaatt 28527341  T
Q  499 atggaaaaataatggtcacgtaactnnnnnnntgtggtcacacagatcgtatatatggttaactgaaatttttcagagtggtacaaa 585  Q
     |||||||||| |||||||| ||||       |||||||||||||| | ||||| |||||| ||||||||||||| |||||||||||    
T  28527340 ctggaaaaatagtggtcacgcaactaaaaaaatgtggtcacacagaccatatatttggttagctgaaatttttcaaagtggtacaaa 28527254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 421 - 587
Target Start/End: Original strand, 33667328 - 33667495
Alignment:
Q  421 atttagaagctgaaaa-tgtggtcacgcaactaaaatgcgcgtgaccattatttttccacttagttaaccaaataaattatggaaaaataatggtcacgt 519  Q
    ||||||||| |||||| ||||||||||||| ||||||| |||| |||| |||||||||||||||||||||||||| ||| || ||||||| ||||||||     
T  33667328 atttagaagttgaaaaatgtggtcacgcaattaaaatgtgcgtaaccactatttttccacttagttaaccaaatatattctgaaaaaatagtggtcacgc 33667427  T
Q  520 aactnnnnnnntgtggtcacacagatcgtatatatggttaactgaaatttttcagagtggtacaaaag 587  Q
    ||||       |||| ||| ||| | | ||||| ||||||||| ||||||||||||||||||||||||    
T  33667428 aacttaaaaaatgtgttcatacataccatatatttggttaactaaaatttttcagagtggtacaaaag 33667495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 70; E-Value: 5e-31
Query Start/End: Original strand, 360 - 523
Target Start/End: Original strand, 45305918 - 45306082
Alignment:
Q  360 aaaatttcagttaaccaaatatatggtctatgtgaacacattttt-cagttgggtgaccactatttagaagctgaaaa-tgtggtcacgcaactaaaatg 457  Q
    |||||||||||||| ||||||||| |||| | ||| || |||||| |||||| |||||||| ||||| |||||||||| ||||| |||||||||||||||    
T  45305918 aaaatttcagttaatcaaatatatagtctgtatgaccatattttttcagttgcgtgaccac-atttaaaagctgaaaaatgtggccacgcaactaaaatg 45306016  T
Q  458 cgcgtgaccattatttttccacttagttaaccaaataaattatggaaaaataatggtcacgtaact 523  Q
     ||||||||| ||||||||||||||||||||| |||||||| |  ||||||| || |||| |||||    
T  45306017 tgcgtgaccactatttttccacttagttaaccgaataaattctaaaaaaatattgatcacataact 45306082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 360 - 490
Target Start/End: Complemental strand, 7378625 - 7378495
Alignment:
Q  360 aaaatttcagttaaccaaatatatggtctatgtgaacacattttt-cagttgggtgaccactatttagaagctgaaaatgtggtcacgcaactaaaatgc 458  Q
    ||||||||||||||| ||||||||||| | ||||| || |||||| |||||| || ||||| ||||||||||| ||||| |||| ||||||||||||||     
T  7378625 aaaatttcagttaacaaaatatatggtttgtgtgaccatattttttcagttgcgtaaccac-atttagaagctaaaaatatggtgacgcaactaaaatgt 7378527  T
Q  459 gcgtgaccattatttttccacttagttaacca 490  Q
    | ||||||| |||| ||||||||| |||||||    
T  7378526 gtgtgaccactattattccacttaattaacca 7378495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 330 - 424
Target Start/End: Original strand, 1400689 - 1400785
Alignment:
Q  330 ttaatgtgtacacc-ttttgtactatttttgaaaatttcagttaaccaaatatatggtctatgtgaacaca-tttttcagttgggtgaccactattt 424  Q
    |||||||||||||| |||||||| | | |  ||||||||||||||||||||||||||| | ||||| |||| ||||| ||||| |||||||||||||    
T  1400689 ttaatgtgtacacccttttgtaccaatctgaaaaatttcagttaaccaaatatatggtatgtgtgaccacattttttaagttgcgtgaccactattt 1400785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 532 - 587
Target Start/End: Original strand, 30906171 - 30906226
Alignment:
Q  532 gtggtcacacagatcgtatatatggttaactgaaatttttcagagtggtacaaaag 587  Q
    |||||||| |||| | ||||| ||||||||||||||||||||||||||||||||||    
T  30906171 gtggtcacgcagaccatatatttggttaactgaaatttttcagagtggtacaaaag 30906226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 360 - 418
Target Start/End: Complemental strand, 41212469 - 41212411
Alignment:
Q  360 aaaatttcagttaaccaaatatatggtctatgtgaacacatttttcagttgggtgacca 418  Q
    ||||||| ||||||||||||||||||||| ||||| ||||||||| ||||| |||||||    
T  41212469 aaaatttaagttaaccaaatatatggtctgtgtgaccacattttttagttgtgtgacca 41212411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 531 - 585
Target Start/End: Original strand, 41212430 - 41212484
Alignment:
Q  531 tgtggtcacacagatcgtatatatggttaactgaaatttttcagagtggtacaaa 585  Q
    |||||||||||||| | ||||| ||||||||| ||||||||||||||||||||||    
T  41212430 tgtggtcacacagaccatatatttggttaacttaaatttttcagagtggtacaaa 41212484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 628 - 694
Target Start/End: Complemental strand, 41825128 - 41825062
Alignment:
Q  628 gtttgtttcgaggtaagaaattacattccttggaatgatattctcaggaataatatttataggaata 694  Q
    ||||||||| ||| |||||||||||||||||| ||||| ||||| |||||||||||||  |||||||    
T  41825128 gtttgtttcaaggaaagaaattacattccttgaaatgacattcttaggaataatatttcaaggaata 41825062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 360 - 424
Target Start/End: Original strand, 28527269 - 28527334
Alignment:
Q  360 aaaatttcagttaaccaaatatatggtctatgtgaacaca-tttttcagttgggtgaccactattt 424  Q
    |||||||||| |||||||||||||||||| ||||| |||| ||||| ||||| |||||||||||||    
T  28527269 aaaatttcagctaaccaaatatatggtctgtgtgaccacatttttttagttgcgtgaccactattt 28527334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 797 - 896
Target Start/End: Original strand, 5008933 - 5009030
Alignment:
Q  797 aatttatagcaagttgagttctattcccatgggaatg-tagaattctcatccttttaagtatgggaataaggaatagaagaaatcatgtgtaaataacat 895  Q
    ||||||||||||||||| || ||||| |||||||||| |||| ||| ||||| |||||| ||| ||||||  ||||||| ||||||||||||||||||||    
T  5008933 aatttatagcaagttgatttttattctcatgggaatgttagatttc-catcc-tttaagcatgagaataa-caatagaataaatcatgtgtaaataacat 5009029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 628 - 694
Target Start/End: Original strand, 20070377 - 20070442
Alignment:
Q  628 gtttgtttcgaggtaagaaattacattccttggaatgatattctcaggaataatatttataggaata 694  Q
    ||||||||| ||||||||||||| |||||||| ||||||||| | |||||| |||||| ||||||||    
T  20070377 gtttgtttcaaggtaagaaattaaattccttgaaatgatatt-ttaggaatgatatttctaggaata 20070442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 443 - 497
Target Start/End: Original strand, 34175155 - 34175209
Alignment:
Q  443 cacgcaactaaaatgcgcgtgaccattatttttccacttagttaaccaaataaat 497  Q
    ||||||||||||||| | |||||   |||||||||||||||||||||||||||||    
T  34175155 cacgcaactaaaatgtgtgtgactgctatttttccacttagttaaccaaataaat 34175209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 360 - 424
Target Start/End: Complemental strand, 33667478 - 33667413
Alignment:
Q  360 aaaatttcagttaaccaaatatatggtctatgtgaacacat-ttttcagttgggtgaccactattt 424  Q
    ||||||| ||||||||||||||||||| | | ||||||||| |||| ||||| |||||||||||||    
T  33667478 aaaattttagttaaccaaatatatggtatgtatgaacacattttttaagttgcgtgaccactattt 33667413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 771 - 834
Target Start/End: Original strand, 31718639 - 31718702
Alignment:
Q  771 tggaaataaatgtgagtagtagtaagaatttatagcaagttgagttctattcccatgggaatgt 834  Q
    ||||||||||||||||| |||||   || || || ||| |||||||||||||||||||||||||    
T  31718639 tggaaataaatgtgagtggtagtggaaaattttaacaaattgagttctattcccatgggaatgt 31718702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1126 (Bit Score: 105; Significance: 7e-52; HSPs: 3)
Name: scaffold1126
Description:

Target: scaffold1126; HSP #1
Raw Score: 105; E-Value: 7e-52
Query Start/End: Original strand, 364 - 586
Target Start/End: Complemental strand, 363 - 138
Alignment:
Q  364 tttcagttaaccaaatatatggtctatgtgaacaca-tttttcagttgggtgaccactatttagaagctgaaaa-tgtggtcacgcaactaaaatgcgcg 461  Q
    ||||||||||||||||||||||||| ||||  |||| ||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||     
T  363 tttcagttaaccaaatatatggtctgtgtggccacactttttcagttgcgtgaccactatttagaagctgaaaaatgtggtcacgcaactaaaatgcgca 264  T
Q  462 tgaccattatttttccacttagttaaccaaataaattatggaaaaataatggtcacgtaactnnnnnnntgtggtcacacagatcgtatatatggttaac 561  Q
    |||||| |||||||||||||| ||| |||||||| || || |||| || |||||||| ||||       |||| ||||||||  | ||||| ||||||||    
T  263 tgaccactatttttccacttacttatccaaataatttttgaaaaattagtggtcacgcaactaaaacaatgtgatcacacagtccatatatttggttaac 164  T
Q  562 tgaaatttttc-agagtggtacaaaa 586  Q
    ||||||||||| ||||||||||||||    
T  163 tgaaatttttcaagagtggtacaaaa 138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1126; HSP #2
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 360 - 421
Target Start/End: Original strand, 155 - 217
Alignment:
Q  360 aaaatttcagttaaccaaatatatggtctatgtgaacacatt-tttcagttgggtgaccacta 421  Q
    |||||||||||||||||||||||||| || ||||| |||||| ||| ||||| ||||||||||    
T  155 aaaatttcagttaaccaaatatatggactgtgtgatcacattgttttagttgcgtgaccacta 217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1126; HSP #3
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 531 - 585
Target Start/End: Original strand, 328 - 382
Alignment:
Q  531 tgtggtcacacagatcgtatatatggttaactgaaatttttcagagtggtacaaa 585  Q
    ||||| |||||||| | ||||| ||||||||||||| ||||||||||||||||||    
T  328 tgtggccacacagaccatatatttggttaactgaaaattttcagagtggtacaaa 382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 105; Significance: 7e-52; HSPs: 28)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 105; E-Value: 7e-52
Query Start/End: Original strand, 316 - 585
Target Start/End: Original strand, 3222337 - 3222610
Alignment:
Q  316 gattgatagacacg-ttaatgtgtacaccttttgtactatttttgaaaatttcagttaaccaaatatatggtctatgtgaacacattttt-cagttgggt 413  Q
    |||||||||||||  |||||||||||||| |||||| || | || |||||||||  |||||||||||||||| | ||||| ||||||||| |||||| ||    
T  3222337 gattgatagacacccttaatgtgtacaccctttgtattactcttaaaaatttcaaataaccaaatatatggtgtctgtgaccacattttttcagttgcgt 3222436  T
Q  414 gaccactatttagaagctgaaaa-tgtggtcacgcaactaaaatgcgcgtgaccattatttttccacttagttaaccaaataaattatggaaaa-ataat 511  Q
    |||||||||||| | |||||||| || ||||||||||||||||||  |||||||| |||||||||||||||||||||||||||||| ||||||| ||| |    
T  3222437 gaccactatttaaatgctgaaaaatgcggtcacgcaactaaaatgtacgtgaccactatttttccacttagttaaccaaataaattctggaaaatatagt 3222536  T
Q  512 ggtcacgtaactnnnnnnntgtggtcacacagatcgtatatatggttaactgaaatttttcagagtggtacaaa 585  Q
    ||||||||||||       |||||||||||||| | ||||| || |||||| |  ||||| |||||| ||||||    
T  3222537 ggtcacgtaactagaaaaatgtggtcacacagaccatatatttgattaactaatcttttttagagtgatacaaa 3222610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 104; E-Value: 3e-51
Query Start/End: Original strand, 359 - 585
Target Start/End: Complemental strand, 10304859 - 10304632
Alignment:
Q  359 gaaaatttcagttaaccaaatatatggtctatgtgaacacattttt-cagttgggtgaccactatttagaagctgaaaa-tgtggtcacgcaactaaaat 456  Q
    |||||||| ||| ||| ||||||||||||| ||||| ||||||||| |||||| |||| |||||||||||||| ||||| |  |||||||||||||||||    
T  10304859 gaaaattttagtgaactaaatatatggtctgtgtgaccacattttttcagttgcgtgatcactatttagaagcagaaaaatacggtcacgcaactaaaat 10304760  T
Q  457 gcgcgtgaccattatttttccacttagttaaccaaataaattatggaaaaataatggtcacgtaactnnnnnnntgtggtcacacagatcgtatatatgg 556  Q
    ||||||||||| ||||||| |||||||||||||||||||||| |||||||| | |||||||| || |       |||||||||||||| | ||||| |||    
T  10304759 gcgcgtgaccactattttttcacttagttaaccaaataaattctggaaaaaaagtggtcacgcaa-ttaaaaagtgtggtcacacagaccatatatttgg 10304661  T
Q  557 ttaactgaaatttttcagagtggtacaaa 585  Q
    ||||||||||||||| |||||||||||||    
T  10304660 ttaactgaaattttttagagtggtacaaa 10304632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 90; E-Value: 6e-43
Query Start/End: Original strand, 360 - 507
Target Start/End: Complemental strand, 33815174 - 33815025
Alignment:
Q  360 aaaatttcagttaaccaaatatatggtctatgtgaacacattttt-cagttgggtgaccactatttagaagctgaaaa-tgtggtcacgcaactaaaatg 457  Q
    |||| |||| ||||| |||||||| |||| ||||| ||||||||| |||||| ||||||||||||||||||||||||| |||||||||||||||||||||    
T  33815174 aaaacttcaattaactaaatatatagtctgtgtgaccacattttttcagttgcgtgaccactatttagaagctgaaaaatgtggtcacgcaactaaaatg 33815075  T
Q  458 cgcgtgaccattatttttccacttagttaaccaaataaattatggaaaaa 507  Q
    ||||||||||  ||||||||||||||||||||||||||||| || |||||    
T  33815074 cgcgtgaccaccatttttccacttagttaaccaaataaattctgaaaaaa 33815025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 87; E-Value: 4e-41
Query Start/End: Original strand, 343 - 585
Target Start/End: Original strand, 2834884 - 2835140
Alignment:
Q  343 cttttgtactatttttgaaaatttcagttaaccaaatatatggtctatgtgaacacattttt--cagttgggtgaccactattt-----------agaag 429  Q
    |||||||| |||||| |||||||| |||||| ||||||||||||||  | || |||||||||  |||||| || ||||||||||           | |||    
T  2834884 cttttgtattattttggaaaatttaagttaatcaaatatatggtctgcgggatcacatttttttcagttgtgtaaccactatttttttagtatttaaaag 2834983  T
Q  430 ctgaaaa-tgtggtcacgcaactaaaatgcgcgtgaccattatttttccacttagttaaccaaataaattatggaaaaataatggtcacgtaactnnnnn 528  Q
    ||||||| | |||||| ||||||||||| |||||||||||||||||||||||||| |||| |||||||||||||||||||| |||| ||  ||||         
T  2834984 ctgaaaaatatggtcatgcaactaaaatacgcgtgaccattatttttccacttagctaactaaataaattatggaaaaatagtggttacacaactaaaaa 2835083  T
Q  529 nntgtggtcacacagatcgtatatatggttaactgaaatttttcagagtggtacaaa 585  Q
      ||||||||||||||| |||||| ||||||||| ||||||||||||||||||||||    
T  2835084 aatgtggtcacacagatggtatatttggttaacttaaatttttcagagtggtacaaa 2835140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 83; E-Value: 9e-39
Query Start/End: Original strand, 360 - 573
Target Start/End: Original strand, 22608312 - 22608529
Alignment:
Q  360 aaaatttcagttaaccaaatatatggtctatgtgaacacatttttcagttgggtgaccactatttagaagctg-aaaatgtggtcacgcaactaaaatgc 458  Q
    ||||||| ||||||||||||||||||||| |||||  |||||||||||||| ||||||||||||||||||||| |||||||||||| ||||||||||||     
T  22608312 aaaattttagttaaccaaatatatggtctgtgtgactacatttttcagttgcgtgaccactatttagaagctgaaaaatgtggtcatgcaactaaaatgt 22608411  T
Q  459 gcgtgaccattatttttccacttagttaaccaaataaattatggaaaaataatggtcacgtaactnnnnnnntgtggtcacacagatcgt---atatatg 555  Q
    || |||||| |||||||  | |||||||| ||||||| || || |||| || |||||||| ||||       | |||||||||||||| |   |||| ||    
T  22608412 gcatgaccactattttttgaattagttaatcaaataatttctgaaaaattagtggtcacgcaactaaaacaatatggtcacacagatcatataatatttg 22608511  T
Q  556 gttaactgaaatttttca 573  Q
    ||||||||||| ||||||    
T  22608512 gttaactgaaaattttca 22608529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 78; E-Value: 9e-36
Query Start/End: Original strand, 412 - 581
Target Start/End: Complemental strand, 138820 - 138650
Alignment:
Q  412 gtgaccactatttagaagctgaaaa-tgtggtcacgcaactaaaatgcgcgtgaccattatttttccacttagttaaccaaataaattatggaaaaataa 510  Q
    ||||||||||||||||||||||||| |||||||||||||||||| || ||| ||||| |||||||||||||||| ||||||||||||| || |||||||     
T  138820 gtgaccactatttagaagctgaaaaatgtggtcacgcaactaaattgtgcgcgaccactatttttccacttagtcaaccaaataaattctgaaaaaatag 138721  T
Q  511 tggtcacgtaactnnnnnnntgtggtcacacagatcgtatatatggttaactgaaatttttcagagtggta 581  Q
    |||||||| ||||       ||||| |||||||| | ||||| ||||||||| || ||||| |||||||||    
T  138720 tggtcacgcaactaagaaaatgtggccacacagaccatatatttggttaactaaatttttttagagtggta 138650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 78; E-Value: 9e-36
Query Start/End: Original strand, 412 - 581
Target Start/End: Complemental strand, 146841 - 146671
Alignment:
Q  412 gtgaccactatttagaagctgaaaa-tgtggtcacgcaactaaaatgcgcgtgaccattatttttccacttagttaaccaaataaattatggaaaaataa 510  Q
    ||||||||||||||||||||||||| |||||||||||||||||| || ||| ||||| |||||||||||||||| ||||||||||||| || |||||||     
T  146841 gtgaccactatttagaagctgaaaaatgtggtcacgcaactaaattgtgcgcgaccactatttttccacttagtcaaccaaataaattctgaaaaaatag 146742  T
Q  511 tggtcacgtaactnnnnnnntgtggtcacacagatcgtatatatggttaactgaaatttttcagagtggta 581  Q
    |||||||| ||||       ||||| |||||||| | ||||| ||||||||| || ||||| |||||||||    
T  146741 tggtcacgcaactaagaaaatgtggccacacagaccatatatttggttaactaaatttttttagagtggta 146671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 345 - 515
Target Start/End: Complemental strand, 3620932 - 3620761
Alignment:
Q  345 tttgtactatttttgaaaatttcagttaaccaaatatatggtctatgtgaacacatttttcagttgggtgaccactatttagaagctg-aaaatgtggtc 443  Q
    ||||||||||||| ||||||||||||||| ||||||| |||||| || ||| ||| |||||| | | |||| ||||||||||||| || |||||||| ||    
T  3620932 tttgtactattttcgaaaatttcagttaatcaaatatgtggtctgtgcgaatacaattttcaatcgcgtgatcactatttagaagttgaaaaatgtgatc 3620833  T
Q  444 acgcaactaaaatgcgcgtgaccattatttttccacttagttaaccaaataaattatggaaaaataatggtc 515  Q
    || ||||||||||    ||||||| ||||||| |||||||||||||||||||||| || ||||||| |||||    
T  3620832 acacaactaaaatatatgtgaccactattttttcacttagttaaccaaataaattctgaaaaaatagtggtc 3620761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 413 - 587
Target Start/End: Original strand, 9068411 - 9068585
Alignment:
Q  413 tgaccactatttagaagctgaaaa-tgtggtcacgcaactaaaatgcgcgtgaccattatttttccacttagttaaccaaataaattatggaaaaataat 511  Q
    ||||||||||||| |||||||||| ||||||||| || |||||||||||||||  | |||||||||||||||| ||| |||||| || |||||||||| |    
T  9068411 tgaccactatttaaaagctgaaaaatgtggtcacacatctaaaatgcgcgtgattactatttttccacttagtaaac-aaataagttctggaaaaatagt 9068509  T
Q  512 ggtcacgtaactnnnnnnntgtggtcacacagatcgtatatatggttaactgaaatttttcagagtggtacaaaag 587  Q
    ||||||| ||||       |||||||||||| | | ||||| || |||||| ||||||||||||||||||||||||    
T  9068510 ggtcacgcaactaaaaaaatgtggtcacacataccatatatttgattaactaaaatttttcagagtggtacaaaag 9068585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 58; E-Value: 8e-24
Query Start/End: Original strand, 771 - 896
Target Start/End: Complemental strand, 6891315 - 6891192
Alignment:
Q  771 tggaaataaatgtgagtagtagtaagaatttatagcaagttgagttctattcccatgggaatgtagaattctcatccttttaagtatgggaataaggaat 870  Q
    ||||||||||||| ||| ||||| |||||||||||||||||||||| |||||||||| ||||||   ||| |||||| |||||| ||| ||||||  |||    
T  6891315 tggaaataaatgttagtggtagtgagaatttatagcaagttgagttttattcccatgagaatgtcagattttcatcc-tttaagcatgtgaataa-caat 6891218  T
Q  871 agaagaaatcatgtgtaaataacatt 896  Q
    |||||||||||||| |||||||||||    
T  6891217 agaagaaatcatgtataaataacatt 6891192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 459 - 608
Target Start/End: Complemental strand, 2430664 - 2430511
Alignment:
Q  459 gcgtgaccattatttttccacttagttaaccaaataaattatggaaaaataatggtcacgtaactnnnnnnntgtggtcacacagatcgtatatatggtt 558  Q
    ||||||||| |||||||||||||||||||||||||||||| || ||||||| |||||| | ||||         |||||||||||||| ||||| | |||    
T  2430664 gcgtgaccactatttttccacttagttaaccaaataaattctgaaaaaatagtggtcatgcaactaaaaaaa-atggtcacacagatcatatatttagtt 2430566  T
Q  559 aactgaaa-tttttcagagtggtaca----aaagtacacgttaagggtgtctacc 608  Q
    |||||||| ||||||||| |||||||    || |||||| |||||||||||||||    
T  2430565 aactgaaattttttcagaatggtacaaaggaatgtacacattaagggtgtctacc 2430511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 330 - 517
Target Start/End: Original strand, 23595074 - 23595254
Alignment:
Q  330 ttaatgtgtacacc-ttttgtactatttttgaaaatttcagttaaccaaatatatggtctatgtgaacaca-tttttcagttgggtgaccactatttaga 427  Q
    |||||||||||||| |||||||  | | | |||||||| ||||||| ||||||||||||| ||||| || | ||||| ||||| ||||| ||||||||||    
T  23595074 ttaatgtgtacacccttttgtatcactctcgaaaatttaagttaactaaatatatggtctgtgtgaccatatttttttagttgtgtgacaactatttaga 23595173  T
Q  428 agctg-aaaatgtggtcacgcaactaaaatgcgcgtgaccattatttttccacttagttaaccaaataaattatggaaaaataatggtcac 517  Q
    ||||| ||||||||||||  |||        |||||| ||| |||||||||||||||||||| ||||||||| || |||| || |||||||    
T  23595174 agctgaaaaatgtggtca--caa--------cgcgtggccactatttttccacttagttaacaaaataaattctgaaaaattagtggtcac 23595254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 360 - 404
Target Start/End: Original strand, 30056072 - 30056116
Alignment:
Q  360 aaaatttcagttaaccaaatatatggtctatgtgaacacattttt 404  Q
    ||||||||||||||||||||||||||||||||||| |||||||||    
T  30056072 aaaatttcagttaaccaaatatatggtctatgtgaccacattttt 30056116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 433 - 496
Target Start/End: Original strand, 9474656 - 9474718
Alignment:
Q  433 aaaatgtggtcacgcaactaaaatgcgcgtgaccattatttttccacttagttaaccaaataaa 496  Q
    |||||||||||||| || ||||||||| ||||||| ||||||| ||||||||||||||||||||    
T  9474656 aaaatgtggtcacgaaa-taaaatgcgtgtgaccactattttttcacttagttaaccaaataaa 9474718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 353 - 424
Target Start/End: Complemental strand, 2430721 - 2430650
Alignment:
Q  353 atttttgaaaatttcagttaaccaaatatatggtctatgtgaacaca-tttttcagttgggtgaccactattt 424  Q
    |||||||||||| || |||||||||||||||||| | ||||| |||| ||||||||||| |||||||||||||    
T  2430721 atttttgaaaatctc-gttaaccaaatatatggtttgtgtgaccacattttttcagttgcgtgaccactattt 2430650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 360 - 420
Target Start/End: Original strand, 10304647 - 10304707
Alignment:
Q  360 aaaatttcagttaaccaaatatatggtctatgtgaacacatttttcagttgggtgaccact 420  Q
    ||||||||||||||||||||||||||||| ||||| |||| |||| | ||| |||||||||    
T  10304647 aaaatttcagttaaccaaatatatggtctgtgtgaccacactttttaattgcgtgaccact 10304707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 360 - 407
Target Start/End: Original strand, 11108116 - 11108163
Alignment:
Q  360 aaaatttcagttaaccaaatatatggtctatgtgaacacatttttcag 407  Q
    ||||||||| ||||||||||||||||||| ||||| ||||||||||||    
T  11108116 aaaatttcaattaaccaaatatatggtctgtgtgaccacatttttcag 11108163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 531 - 584
Target Start/End: Complemental strand, 11108155 - 11108102
Alignment:
Q  531 tgtggtcacacagatcgtatatatggttaactgaaatttttcagagtggtacaa 584  Q
    |||||||||||||| | ||||| ||||||| |||||||||||||||| ||||||    
T  11108155 tgtggtcacacagaccatatatttggttaattgaaatttttcagagtagtacaa 11108102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 459 - 523
Target Start/End: Original strand, 7706862 - 7706926
Alignment:
Q  459 gcgtgaccattatttttccacttagttaaccaaataaattatggaaaaataatggtcacgtaact 523  Q
    ||||||||| ||||||||||||||  ||||||||||| || |||||||||| | |||||| ||||    
T  7706862 gcgtgaccactatttttccacttaagtaaccaaataagttctggaaaaatagttgtcacgcaact 7706926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 330 - 424
Target Start/End: Complemental strand, 9068599 - 9068503
Alignment:
Q  330 ttaatgtgtacacc-ttttgtactatttttgaaaatttcagttaaccaaatatatggtctatgtgaacaca-tttttcagttgggtgaccactattt 424  Q
    |||||||||||||| |||||||| | | |  ||||||| |||||| |||||||||||| | ||||| |||| ||||| ||||| |||||||||||||    
T  9068599 ttaatgtgtacacccttttgtaccactctgaaaaattttagttaatcaaatatatggtatgtgtgaccacatttttttagttgcgtgaccactattt 9068503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 359 - 410
Target Start/End: Original strand, 9068343 - 9068394
Alignment:
Q  359 gaaaatttcagttaaccaaatatatggtctatgtgaacacatttttcagttg 410  Q
    |||||| |||||||||||| |||||||||| | ||| |||||||||||||||    
T  9068343 gaaaatatcagttaaccaagtatatggtctgtatgaccacatttttcagttg 9068394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 330 - 424
Target Start/End: Original strand, 7706779 - 7706876
Alignment:
Q  330 ttaatgtgtaca-ccttttgtactatttttgaaaatttcagttaaccaaatatatggtctatgtgaacacatttt--tcagttgggtgaccactattt 424  Q
    |||||||||||| |||||||||| ||| |  ||||||| ||||||   |||||||||| | ||||| ||||||||  ||||||| |||||||||||||    
T  7706779 ttaatgtgtacatccttttgtaccattctgaaaaattttagttaatataatatatggtttgtgtgaccacatttttttcagttgcgtgaccactattt 7706876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 531 - 581
Target Start/End: Original strand, 7915717 - 7915767
Alignment:
Q  531 tgtggtcacacagatcgtatatatggttaactgaaatttttcagagtggta 581  Q
    ||||||||||||||   ||||| || |||||||||||||||||||||||||    
T  7915717 tgtggtcacacagacgatatatttgattaactgaaatttttcagagtggta 7915767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 535 - 585
Target Start/End: Complemental strand, 22608347 - 22608297
Alignment:
Q  535 gtcacacagatcgtatatatggttaactgaaatttttcagagtggtacaaa 585  Q
    |||||||||| | ||||| ||||||||| |||||||| |||||||||||||    
T  22608347 gtcacacagaccatatatttggttaactaaaatttttgagagtggtacaaa 22608297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 531 - 581
Target Start/End: Original strand, 24386335 - 24386385
Alignment:
Q  531 tgtggtcacacagatcgtatatatggttaactgaaatttttcagagtggta 581  Q
    |||||||||||||| | ||||| ||||||||| ||||||||||| ||||||    
T  24386335 tgtggtcacacagaccatatatttggttaacttaaatttttcagcgtggta 24386385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 531 - 585
Target Start/End: Complemental strand, 30056111 - 30056057
Alignment:
Q  531 tgtggtcacacagatcgtatatatggttaactgaaatttttcagagtggtacaaa 585  Q
    |||||||||| ||| | ||||| |||||||||||||||||| ||||| |||||||    
T  30056111 tgtggtcacatagaccatatatttggttaactgaaattttttagagttgtacaaa 30056057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 368 - 424
Target Start/End: Original strand, 138669 - 138726
Alignment:
Q  368 agttaaccaaatatatggtctatgtgaacacatttt-tcagttgggtgaccactattt 424  Q
    ||||||||||||||||||||| ||||  |||||||| | ||||| |||||||||||||    
T  138669 agttaaccaaatatatggtctgtgtggccacattttcttagttgcgtgaccactattt 138726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 368 - 424
Target Start/End: Original strand, 146690 - 146747
Alignment:
Q  368 agttaaccaaatatatggtctatgtgaacacatttt-tcagttgggtgaccactattt 424  Q
    ||||||||||||||||||||| ||||  |||||||| | ||||| |||||||||||||    
T  146690 agttaaccaaatatatggtctgtgtggccacattttcttagttgcgtgaccactattt 146747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 103; Significance: 1e-50; HSPs: 25)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 103; E-Value: 1e-50
Query Start/End: Original strand, 360 - 585
Target Start/End: Complemental strand, 38606986 - 38606759
Alignment:
Q  360 aaaatttcagttaaccaaatatatggtctatgtgaacacattttt-cagttgggtgaccactatttagaagctgaaaa-tgtggtcacgcaactaaaatg 457  Q
    ||||||||||||||| | ||||||||| |  |||| ||||||||| |||||| || |||||||||||||||||||||| |||||||||||||| ||||||    
T  38606986 aaaatttcagttaactacatatatggtttgcgtgaccacattttttcagttgcgttaccactatttagaagctgaaaaatgtggtcacgcaacgaaaatg 38606887  T
Q  458 cgcgtgaccattatttttccacttagttaaccaaataaattatggaaaaataatggtcacgtaactnnnnnnntgtggtcacacagatcgtatatatggt 557  Q
    || ||||||| |||||||||||||||||||||||||||||| |||||| ||| |||||||| | ||       | |||||||||| | | ||||| | ||    
T  38606886 cgtgtgaccactatttttccacttagttaaccaaataaattctggaaacatagtggtcacgcagctaaaaaaatatggtcacacataccatatatttagt 38606787  T
Q  558 taactgaaatttttcagagtggtacaaa 585  Q
    ||||||||||||||||||||||||||||    
T  38606786 taactgaaatttttcagagtggtacaaa 38606759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 90; E-Value: 6e-43
Query Start/End: Original strand, 360 - 523
Target Start/End: Complemental strand, 5322120 - 5321955
Alignment:
Q  360 aaaatttcagttaaccaaatatatggtctatgtgaacacattttt-cagttgggtgaccactatttagaagctgaaaa-tgtggtcacgcaactaaaatg 457  Q
    ||||||||| ||||||||||||||||||| ||||| ||||||||| || ||| |||| || ||||||||||||||||| | || ||||||||||||||||    
T  5322120 aaaatttcaattaaccaaatatatggtctgtgtgatcacattttttcaattgcgtgatcattatttagaagctgaaaaatatgatcacgcaactaaaatg 5322021  T
Q  458 cgcgtgaccattatttttccacttagttaaccaaataaattatggaaaaataatggtcacgtaact 523  Q
    |||||||||| |||||||||||||||||||||||||||||| |  ||||||| |||||||| ||||    
T  5322020 cgcgtgaccactatttttccacttagttaaccaaataaattctaaaaaaatagtggtcacgcaact 5321955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 90; E-Value: 6e-43
Query Start/End: Original strand, 366 - 586
Target Start/End: Complemental strand, 15714847 - 15714625
Alignment:
Q  366 tcagttaaccaaatatatggtctatgtgaacacattttt-cagttgggtgaccactatttagaagctgaaaa-tgtggtcacgcaactaaaatgcgcgtg 463  Q
    ||||||||| ||||||||||||| ||| | ||||||||| ||| || ||||| |||||||| |||||||||| | |||||||| ||||||||||  ||||    
T  15714847 tcagttaactaaatatatggtctgtgtaaccacattttttcagctgtgtgactactatttaaaagctgaaaaatatggtcacgtaactaaaatgtccgtg 15714748  T
Q  464 accattatttttccacttagttaaccaaataaattatggaaaaataatggtcacgtaactnnnnnnntgtggtcacacagatcgtatatatggttaactg 563  Q
    |||| ||||||||||||||||||||||||||||||  | ||||||| |||||||| ||||       |||||||||| | ||| ||||| | | ||||||    
T  15714747 accactatttttccacttagttaaccaaataaatttcgaaaaaatagtggtcacgcaactaacaaaatgtggtcacataaatcatatatttagctaactg 15714648  T
Q  564 aaatttttcagagtggtacaaaa 586  Q
    |||||||||||||||||||||||    
T  15714647 aaatttttcagagtggtacaaaa 15714625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 88; E-Value: 1e-41
Query Start/End: Original strand, 330 - 495
Target Start/End: Complemental strand, 29367243 - 29367076
Alignment:
Q  330 ttaatgtgtacaccttttgtactatttttgaaaatttcagttaaccaaatatatggtctatgtgaacacattttt-cagttgggtgaccactatttagaa 428  Q
    ||||||||||||||  |||||  | | |||||||||| | ||||| ||||||||||||||||| | || |||||| || ||| ||||||||||||| |||    
T  29367243 ttaatgtgtacaccccttgtatcactcttgaaaattttaattaactaaatatatggtctatgtaaccatattttttcaattgtgtgaccactattttgaa 29367144  T
Q  429 gctgaaaa-tgtggtcacgcaactaaaatgcgcgtgaccattatttttccacttagttaaccaaataa 495  Q
    |||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  29367143 gctgaaaaatgtggtcacgcaactaaaatgcgcgtgaccactatttttccacttagttaaccaaataa 29367076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 87; E-Value: 4e-41
Query Start/End: Original strand, 334 - 587
Target Start/End: Original strand, 5573704 - 5573960
Alignment:
Q  334 tgtgtacacc-ttttgtactatttttgaaaatttcagttaaccaaatatatggtctatgtgaacacattttt-cagttgggtgaccactatttagaagct 431  Q
    |||||||||| |||||||  ||| | ||| |||||||||||||||||||||| | |||||||  |||||||| || ||| |||||||||||||||||| |    
T  5573704 tgtgtacacccttttgtatcattctcgaacatttcagttaaccaaatatatgatatatgtgactacattttttcaattgcgtgaccactatttagaagtt 5573803  T
Q  432 gaaaa-tgtggtcacgcaactaaaatgcgcgtgaccattatttttccacttagttaaccaaataaattatggaaaaataatggtcacgtaactnnnnnnn 530  Q
    ||||| |||||||| | ||||||||||| |||||||| |||||||||||||||||||||||||||||| | |||||||| |||||||| || |           
T  5573804 gaaaaatgtggtcatggaactaaaatgcacgtgaccactatttttccacttagttaaccaaataaatt-ttgaaaaatagtggtcacgcaattaaaaaaa 5573902  T
Q  531 tgtggtcacacagatcgtatata--tggttaactgaaatttttcagagtggtacaaaag 587  Q
    |||||||||| ||| | ||||||  | |||||||||||| ||| |||||||||||||||    
T  5573903 tgtggtcacaaaga-catatatatttagttaactgaaatcttttagagtggtacaaaag 5573960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 400 - 517
Target Start/End: Complemental strand, 1241017 - 1240900
Alignment:
Q  400 tttttcagttgggtgaccactatttagaagctgaaaa-tgtggtcacgcaactaaaatgcgcgtgaccattatttttccacttagttaaccaaataaatt 498  Q
    ||||||||||| ||||||||||||||||||||||||| |||||||| | |||||||||| ||||||||| |||||| |||||||||||||||||||||||    
T  1241017 tttttcagttgtgtgaccactatttagaagctgaaaaatgtggtcatg-aactaaaatgtgcgtgaccactattttcccacttagttaaccaaataaatt 1240919  T
Q  499 atggaaaaataatggtcac 517  Q
    ||||||||||| |||||||    
T  1240918 atggaaaaatagtggtcac 1240900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 77; E-Value: 4e-35
Query Start/End: Original strand, 330 - 523
Target Start/End: Complemental strand, 1251665 - 1251470
Alignment:
Q  330 ttaatgtgtacacct-tttgtactatttttgaaaatttcagttaaccaaatatatggtctatgtgaacacattttt-cagttgggtgaccactatttaga 427  Q
    ||||||||||||||  ||||||| | | | |||||||||||||||| ||||||||| | | || || ||||||||| |||||| |||||||||||||| |    
T  1251665 ttaatgtgtacacccatttgtaccactctcgaaaatttcagttaactaaatatatgatttgtgagaccacattttttcagttgcgtgaccactatttaaa 1251566  T
Q  428 agctgaaaa-tgtggtcacgcaactaaaatgcgcgtgaccattatttttccacttagttaaccaaataaattatggaaaaataatggtcacgtaact 523  Q
    | ||||||| |||| ||| | |||||||||| ||| ||||| |||||| |||||||||||||||||||||||||||||||||| |||||||| ||||    
T  1251565 acctgaaaaatgtgatcatg-aactaaaatgtgcgcgaccactattttcccacttagttaaccaaataaattatggaaaaatagtggtcacgcaact 1251470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 345 - 586
Target Start/End: Complemental strand, 26493507 - 26493267
Alignment:
Q  345 tttgtactatttttgaaaatttcagttaaccaaatatatggtctatgtgaacacattttt-cagttgggtgaccactatttagaagctgaaaa-tgtggt 442  Q
    ||||||| | |||| ||||||||| ||||||||||||||  | | ||||| ||||||||| |||||| || || ||||||||||||||||||| ||||||    
T  26493507 tttgtaccacttttaaaaatttcaattaaccaaatatat--tttgtgtgatcacattttttcagttgtgtaactactatttagaagctgaaaaatgtggt 26493410  T
Q  443 cacgcaactaaaatgcgcgtgaccattatttttccacttagttaaccaaataaattatggaaaaataatggtcacgtaactnnnnnnntgtggtcacaca 542  Q
    |||||||||||| |||||||||| | |||||||||| |||||||| |||||||||| || |||| |||||||| || ||||       |||||||||| |    
T  26493409 cacgcaactaaa-tgcgcgtgacaactatttttccatttagttaatcaaataaattctgaaaaattaatggtcgcgcaactaaaacaatgtggtcacata 26493311  T
Q  543 gatcgtatatatggttaactgaaatttttcagagtggtacaaaa 586  Q
    || | ||||| || |||| | |||||||| | ||||||| ||||    
T  26493310 gaccatatatttgattaagtaaaattttttaaagtggtataaaa 26493267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 330 - 517
Target Start/End: Original strand, 31596715 - 31596905
Alignment:
Q  330 ttaatgtgtacacct-tttgtactatttttgaaaatttcagttaaccaaatatatggtctatgtgaacacattttt-cagttgggtgaccactatttaga 427  Q
    ||||| ||||||||| ||||||| | |||  |||||| ||||||| |||||||||||| | ||||| ||||||||| |||||| || |||||||||||||    
T  31596715 ttaatatgtacacctctttgtaccactttgaaaaattacagttaatcaaatatatggtatgtgtgaccacattttttcagttgcgttaccactatttaga 31596814  T
Q  428 agctgaaaa-tgtggtcacgcaactaaaatgcgcgtgaccattatttttccacttagttaaccaaataaattatggaaaaa-taatggtcac 517  Q
    || |||||| ||||||||  |||||||| |||| || | || |||||||||||||| |||||||||||||||||||||||| ||||||||||    
T  31596815 agatgaaaaatgtggtcagacaactaaa-tgcgtgtaatcactatttttccacttaattaaccaaataaattatggaaaaactaatggtcac 31596905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 68; E-Value: 8e-30
Query Start/End: Original strand, 330 - 498
Target Start/End: Complemental strand, 31273751 - 31273580
Alignment:
Q  330 ttaatgtgtacacctttt-gtactatttttgaaaatttcagttaaccaaatatatggtctatgtgaacacat-ttttcagttgggtgaccactatttaga 427  Q
    |||||||||| ||||||| |||| | | | |||||||||| |||| |||||||||||||||||||  ||||| |||||||||| |||||| |||||||||    
T  31273751 ttaatgtgtatacctttttgtaccactctcgaaaatttcaattaatcaaatatatggtctatgtggccacatgttttcagttgcgtgacccctatttaga 31273652  T
Q  428 agctgaaaa-tgtggtcacgcaactaaaatgcgcgtgaccattatttttccacttagttaaccaaataaatt 498  Q
    ||||||||| | |||||| ||| ||||||||| ||||| |  ||||||| |||| |||||||||||||||||    
T  31273651 agctgaaaaatatggtcatgcagctaaaatgcacgtgaacgctattttttcactaagttaaccaaataaatt 31273580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 774 - 866
Target Start/End: Original strand, 36129642 - 36129733
Alignment:
Q  774 aaataaatgtgagtagtagtaagaatttatagcaagttgagttctattcccatgggaatgtagaattctcatccttttaagtatgggaataag 866  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||  ||||||  |||||||||| |||||| |||||||||||    
T  36129642 aaataaatgtgagtagtagtaagaatttatagcaagttgagttttattcccatgaaaatgtaagattctcatcc-tttaagcatgggaataag 36129733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 638 - 832
Target Start/End: Original strand, 40209934 - 40210131
Alignment:
Q  638 aggtaagaaattacattccttggaatgatattctcaggaataatatttataggaat---attcctacccacgtgttttgtaaaaatttagatttcttggg 734  Q
    |||||||||||||||||||||| |||||||||| || ||| ||||||  |||||||   ||||||||||| |||||| ||||||| || |||||| | ||    
T  40209934 aggtaagaaattacattccttgaaatgatattcccaagaacaatattcctaggaataacattcctacccatgtgtttggtaaaaaatttgatttcctcgg 40210033  T
Q  735 aacgttttagaaatgatttaattnnnnnnnnnnnnntggaaataaatgtgagtagtagtaagaatttatagcaagttgagttctattcccatgggaat 832  Q
    || |||| |||||| ||||||||             ||||||||||||||||| ||| | ||||||||| |||||||||||| ||||||||| |||||    
T  40210034 aatgtttcagaaattatttaattaaaaaaataaaaatggaaataaatgtgagtggtattgagaatttatggcaagttgagttatattcccattggaat 40210131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 771 - 846
Target Start/End: Original strand, 5894933 - 5895008
Alignment:
Q  771 tggaaataaatgtgagtagtagtaagaatttatagcaagttgagttctattcccatgggaatgtagaattctcatc 846  Q
    ||||||||||||||||||||||| |||||||| ||||||||||||| ||||| ||||||||||||  |||||||||    
T  5894933 tggaaataaatgtgagtagtagtgagaatttaaagcaagttgagttttattctcatgggaatgtaagattctcatc 5895008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 360 - 497
Target Start/End: Original strand, 15233169 - 15233318
Alignment:
Q  360 aaaatttcagttaaccaaatatatggtctatgtgaacacatttttcagttgggtgaccactattt-----------agaagctgaaaat-gtggtcacgc 447  Q
    |||||||||||||| |||||||||||||| || || ||||||||||||||  |||||||||||||           | ||| ||||||  ||||||||||    
T  15233169 aaaatttcagttaatcaaatatatggtctctgcgatcacatttttcagttacgtgaccactatttttccagcatttaaaagttgaaaaacgtggtcacgc 15233268  T
Q  448 aactaaaatgcgcgtgaccattatttttccacttagttaaccaaataaat 497  Q
    ||||||||||||| |||||| ||||||| |||||| ||||||||||||||    
T  15233269 aactaaaatgcgcatgaccactattttttcacttaattaaccaaataaat 15233318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 370 - 453
Target Start/End: Original strand, 33286178 - 33286263
Alignment:
Q  370 ttaaccaaatatatggtctatgtgaacacattttt-cagttgggtgaccactatttagaagctg-aaaatgtggtcacgcaactaa 453  Q
    |||||||||||||||||||  |||| ||||||||| || ||| ||||||||| ||||||||||| |||||||||||||||||||||    
T  33286178 ttaaccaaatatatggtctgcgtgaccacattttttcaattgcgtgaccactttttagaagctgaaaaatgtggtcacgcaactaa 33286263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 45; E-Value: 5e-16
Query Start/End: Original strand, 459 - 523
Target Start/End: Complemental strand, 26914748 - 26914684
Alignment:
Q  459 gcgtgaccattatttttccacttagttaaccaaataaattatggaaaaataatggtcacgtaact 523  Q
    |||||||||||||||||||||| | ||||||||||||||| | |||||||| |||||||||||||    
T  26914748 gcgtgaccattatttttccactcaattaaccaaataaattcttgaaaaatagtggtcacgtaact 26914684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 433 - 497
Target Start/End: Original strand, 28700176 - 28700240
Alignment:
Q  433 aaaatgtggtcacgcaactaaaatgcgcgtgaccattatttttccacttagttaaccaaataaat 497  Q
    |||||| | |||| ||| ||||||||  |||||||||||||||| ||||||||||||||||||||    
T  28700176 aaaatgcgatcacacaattaaaatgcaagtgaccattatttttctacttagttaaccaaataaat 28700240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 461 - 516
Target Start/End: Complemental strand, 24575962 - 24575907
Alignment:
Q  461 gtgaccattatttttccacttagttaaccaaataaattatggaaaaataatggtca 516  Q
    ||||||| ||||||| |||||| ||||||||||||||| |||||||||| ||||||    
T  24575962 gtgaccactattttttcacttatttaaccaaataaattctggaaaaatagtggtca 24575907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 640 - 694
Target Start/End: Complemental strand, 43093401 - 43093348
Alignment:
Q  640 gtaagaaattacattccttggaatgatattctcaggaataatatttataggaata 694  Q
    ||||||||| ||||| |||||||||||||| ||||||||||||||||||| ||||    
T  43093401 gtaagaaatgacatttcttggaatgatatt-tcaggaataatatttatagaaata 43093348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 433 - 509
Target Start/End: Original strand, 6809821 - 6809898
Alignment:
Q  433 aaaatgtggtcacgcaactaaaatgcgcgtgaccattatttttccacttagttaaccaaataaattatg-gaaaaata 509  Q
    |||||||||| || | |||||||| |  ||||||| |||||||||| ||| |||||||||||||||||| ||||||||    
T  6809821 aaaatgtggttactcgactaaaatacatgtgaccactatttttccatttaattaaccaaataaattatgagaaaaata 6809898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 420 - 517
Target Start/End: Complemental strand, 24538078 - 24537981
Alignment:
Q  420 tatttagaagctgaaaatgtggtcacgcaactaaaatgcgcgtgaccattatttttccacttagttaaccaaataaattatggaaaaataatggtcac 517  Q
    |||||||||||| ||||| |||||| | ||||  || ||| || |||| ||||||||||  | |||||||||||||||| ||||||| || |||||||    
T  24538078 tatttagaagctaaaaatatggtcatgtaactgcaacgcgtgttaccactatttttccatatggttaaccaaataaattttggaaaattagtggtcac 24537981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 345 - 478
Target Start/End: Original strand, 32959496 - 32959631
Alignment:
Q  345 tttgtactatttttgaaaatttcagttaaccaaatatatggtctatgtgaacacattttt-cagttgggtgaccactatttagaagctgaaaa-tgtggt 442  Q
    ||||||| ||| | |||| ||||  ||||||||||| ||| | | ||||| ||||||||| || ||  |||||||| ||| ||||||| |||| | ||||    
T  32959496 tttgtacaattatggaaattttcgattaaccaaatacatgatttgtgtgatcacattttttcaattacgtgaccaccattaagaagctaaaaaatatggt 32959595  T
Q  443 cacgcaactaaaatgcgcgtgaccattatttttcca 478  Q
    ||| ||||||||||| | ||||||| ||||||||||    
T  32959596 cacacaactaaaatgtgtgtgaccactatttttcca 32959631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 772 - 813
Target Start/End: Complemental strand, 9015313 - 9015272
Alignment:
Q  772 ggaaataaatgtgagtagtagtaagaatttatagcaagttga 813  Q
    |||||||||||||||| ||||| |||||||||||||| ||||    
T  9015313 ggaaataaatgtgagtggtagtgagaatttatagcaaattga 9015272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 360 - 424
Target Start/End: Original strand, 15714641 - 15714706
Alignment:
Q  360 aaaatttcagttaaccaaatatatggtctatgtgaacacatttt-tcagttgggtgaccactattt 424  Q
    ||||||||||||| | ||||||||| | ||||||| |||||||| | ||||| |||||||||||||    
T  15714641 aaaatttcagttagctaaatatatgatttatgtgaccacattttgttagttgcgtgaccactattt 15714706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 532 - 585
Target Start/End: Original strand, 24576180 - 24576233
Alignment:
Q  532 gtggtcacacagatcgtatatatggttaactgaaatttttcagagtggtacaaa 585  Q
    ||||||||||||| | ||||| ||||||| |||||||||  |||||||||||||    
T  24576180 gtggtcacacagaccatatatttggttaattgaaattttcgagagtggtacaaa 24576233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 103; Significance: 1e-50; HSPs: 30)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 103; E-Value: 1e-50
Query Start/End: Original strand, 359 - 585
Target Start/End: Original strand, 18312777 - 18313004
Alignment:
Q  359 gaaaatttcagttaaccaaatatatggtctatgtgaacacat-ttttcagttgggtgaccactatttagaagctgaaaatgtggtcacgcaactaaaatg 457  Q
    |||||||||| |||| |||||||||||||| ||||| ||||| |||||||||| || || ||||||||||||||||||||||| ||||||||||||||||    
T  18312777 gaaaatttcaattaatcaaatatatggtctctgtgaccacatattttcagttgcgtcactactatttagaagctgaaaatgtgctcacgcaactaaaatg 18312876  T
Q  458 cgcgtgaccattatttttccacttagttaaccaaataaattatggaaaaataatggtcacgtaactnnnnnnntgtggtcacacagatcgtatatatggt 557  Q
    |  ||||||| ||||||||||||||||||||| |||||||| | |||||||| |||||||| ||||       | | | |||||| | | ||||| ||||    
T  18312877 catgtgaccactatttttccacttagttaacctaataaattcttgaaaaatagtggtcacgcaactaaaaaaatttagccacacaaaccatatatttggt 18312976  T
Q  558 taactgaaatttttcagagtggtacaaa 585  Q
    || |||||||||||||||||||||||||    
T  18312977 tagctgaaatttttcagagtggtacaaa 18313004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 100; E-Value: 7e-49
Query Start/End: Original strand, 360 - 587
Target Start/End: Original strand, 31303404 - 31303632
Alignment:
Q  360 aaaatttcagttaaccaaatatatggtctatgtgaacacattttt-cagttgggtgaccactatttagaagctgaaaa-tgtggtcacgcaactaaaatg 457  Q
    ||||||||||| ||||||||| |||||||  |||| ||||||||| || ||| ||||||||||||||||||||||||| |||||||| ||||||||||||    
T  31303404 aaaatttcagtcaaccaaatacatggtctgcgtgaccacattttttcaattgcgtgaccactatttagaagctgaaaaatgtggtcatgcaactaaaatg 31303503  T
Q  458 cgcgtgaccattatttttccacttagttaaccaaataaattatggaaaaataatggtcacgtaactnnnnnnntgtggtcacacagatcgtatatatggt 557  Q
     ||||||||| |||||||||||||||||||||||||||||| |||||| ||| |||||||| ||||       |||||||||||| | | ||||| | ||    
T  31303504 tgcgtgaccactatttttccacttagttaaccaaataaattctggaaacatagtggtcacgcaact-aaaaaatgtggtcacacataccatatattttgt 31303602  T
Q  558 taactgaaatttttcagagtggtacaaaag 587  Q
    ||||||||||||||  |||||||| |||||    
T  31303603 taactgaaatttttttgagtggtataaaag 31303632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 99; E-Value: 3e-48
Query Start/End: Original strand, 359 - 507
Target Start/End: Original strand, 20556716 - 20556866
Alignment:
Q  359 gaaaatttcagttaaccaaatatatggtctatgtgaacacattttt-cagttgggtgaccactatttagaagctgaaaa-tgtggtcacgcaactaaaat 456  Q
    |||||||||||||||||||||||||||||  ||||| || |||||| |||||| ||||||||||||||||||||||||| ||||||||||||||||||||    
T  20556716 gaaaatttcagttaaccaaatatatggtcggtgtgaccatattttttcagttgtgtgaccactatttagaagctgaaaaatgtggtcacgcaactaaaat 20556815  T
Q  457 gcgcgtgaccattatttttccacttagttaaccaaataaattatggaaaaa 507  Q
     |||||||||| |||||||||||||||||||||||||||||| || |||||    
T  20556816 acgcgtgaccaatatttttccacttagttaaccaaataaattctgaaaaaa 20556866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 95; E-Value: 7e-46
Query Start/End: Original strand, 360 - 581
Target Start/End: Original strand, 21589574 - 21589797
Alignment:
Q  360 aaaatttcagttaaccaaatatatggtctatgtgaacacattttt-cagttgggtgaccactatttagaagctgaaaa-tgtggtcacgcaactaaaatg 457  Q
    ||||||| ||| || ||||||||| |||||||||| || |||||| |||||| |||| |||||||||||||||||||| |||||||| ||||||||||||    
T  21589574 aaaattttagtcaatcaaatatattgtctatgtgaccatattttttcagttgtgtgatcactatttagaagctgaaaaatgtggtcatgcaactaaaatg 21589673  T
Q  458 cgcgtgaccattatttttccacttagttaaccaaataaattatggaaaaataatggtcacgtaactnnnnnnntgtggtcacacagatcgtatatatggt 557  Q
    || ||||||| |||||||||||||| |||| ||||||| || |||||||||| |||||| | ||||       |||||||||||||| | ||||| |||     
T  21589674 cgtgtgaccactatttttccacttaattaatcaaataagttctggaaaaatagtggtcatgcaactaaaaaaatgtggtcacacagaccatatatttgga 21589773  T
Q  558 taactgaaatttttcagagtggta 581  Q
    |||||||||||||| |||||||||    
T  21589774 taactgaaattttttagagtggta 21589797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 357 - 584
Target Start/End: Original strand, 21548401 - 21548629
Alignment:
Q  357 ttgaaaatttcagttaaccaaatatatggtctatgtgaacacattttt-cagttgggtgaccactatttagaagctgaaaa-tgtggtcacgcaactaaa 454  Q
    ||||||||||||||||| |||| ||||||| | ||||| || |||||| |||||| ||||||| |||||| |||||||||| |||||||||||||||  |    
T  21548401 ttgaaaatttcagttaatcaaa-atatggtatgtgtgaccatattttttcagttgtgtgaccaatatttaaaagctgaaaaatgtggtcacgcaactcga 21548499  T
Q  455 atgcgcgtgaccattatttttccacttagttaaccaaataaattatggaaaaataatggtcacgtaactnnnnnnntgtggtcacacagatcgtatatat 554  Q
    |||||||| |||| | |||||||||||||||||||||||||||| |||||||||| |||||||| ||||       | || ||||||||| | ||||| |    
T  21548500 atgcgcgtaaccactgtttttccacttagttaaccaaataaattctggaaaaatagtggtcacgcaactaaacaaatatgatcacacagaccatatattt 21548599  T
Q  555 ggttaactgaaatttttcagagtggtacaa 584  Q
     |||||||||||||||| ||| ||||||||    
T  21548600 agttaactgaaattttttagaatggtacaa 21548629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 85; E-Value: 6e-40
Query Start/End: Original strand, 378 - 585
Target Start/End: Original strand, 4290796 - 4291004
Alignment:
Q  378 atatatggtctatgtgaacacattttt-cagttgggtgaccactatttagaagctgaaaa-tgtggtcacgcaactaaaatgcgcgtgaccattattttt 475  Q
    ||||||||| ||| ||| ||||||||| |||||| |||||||||||||||||| |||||| |||||||||||||||||  || ||||||||| |||||||    
T  4290796 atatatggtttatctgaccacattttttcagttgagtgaccactatttagaagttgaaaaatgtggtcacgcaactaag-tgtgcgtgaccactattttt 4290894  T
Q  476 ccacttagttaaccaaataaattatggaaaaataatggtcacgtaactnnnnnnntgtggtcacacagatcgtatatatggttaactgaaatttttcaga 575  Q
    ||||||||||||||||||||||| || |||| || |||||||| ||||        ||||||| ||||||| | ||| |||||||||||||||||||| |    
T  4290895 ccacttagttaaccaaataaattctgaaaaactagtggtcacgcaactaaaaaaacgtggtcatacagatcatttatttggttaactgaaatttttcaaa 4290994  T
Q  576 gtggtacaaa 585  Q
    || |||||||    
T  4290995 gtagtacaaa 4291004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 78; E-Value: 9e-36
Query Start/End: Original strand, 345 - 578
Target Start/End: Complemental strand, 5083964 - 5083731
Alignment:
Q  345 tttgtactatttttgaaaatttcagttaaccaaatatatggtctatgtgaacacattttt-cagttgggtgaccactatttagaagctgaaaa-tgtggt 442  Q
    |||||| |||| | |||||||||| || | |||||||||||| | ||||| ||||||||| || ||| |||||||||||||||||| |||||| | ||||    
T  5083964 tttgtattattctcgaaaatttcaattcatcaaatatatggtatgtgtgaccacattttttcaattgcgtgaccactatttagaagttgaaaaatatggt 5083865  T
Q  443 cacgcaactaaaatgcgcgtgaccattatttttccacttagttaaccaaataaattatggaaaaataatggtcacgtaactnnnnnnntgtggtcacaca 542  Q
    |||||||||||| |||| ||||||| |||||||| |||| |||||| ||||||||| | |||||||| |||||||||||||       |||||||||| |    
T  5083864 cacgcaactaaa-tgcgggtgaccactatttttcaactttgttaacgaaataaattctagaaaaatagtggtcacgtaact-aaaaaatgtggtcacaaa 5083767  T
Q  543 gatcgtatatatggttaactgaaatttttcagagtg 578  Q
    || | ||||| || ||||||||||||||||| ||||    
T  5083766 gaccatatatttgattaactgaaatttttcaaagtg 5083731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 412 - 587
Target Start/End: Complemental strand, 28805094 - 28804916
Alignment:
Q  412 gtgaccactatttagaagctgaaaa-tgtggtcacgcaactaaaatgcgcgtgaccattatttttccacttagttaaccaaataaattatggaaaaataa 510  Q
    |||| |||||||||||||||||||| ||||||||| |||| |||||||||| ||||| ||||||||||||||||||||||||||||||||||||| |||     
T  28805094 gtgatcactatttagaagctgaaaaatgtggtcacacaaccaaaatgcgcg-gaccactatttttccacttagttaaccaaataaattatggaaatatag 28804996  T
Q  511 tggtcacgtaact---nnnnnnntgtggtcacacagatcgtatatatggttaactgaaatttttcagagtggtacaaaag 587  Q
    |||||||  ||||          |||||||||| ||| | ||||| |||||||||||||||||  ||| |||||||||||    
T  28804995 tggtcacacaactaaaaaaaaaatgtggtcacatagaccatatatttggttaactgaaattttctagaatggtacaaaag 28804916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 68; E-Value: 8e-30
Query Start/End: Original strand, 359 - 518
Target Start/End: Complemental strand, 22740818 - 22740657
Alignment:
Q  359 gaaaatttcagttaaccaaatatatggtctatgtgaacacattttt--cagttgggtgaccactatttagaagctgaaaa-tgtggtcacgcaactaaaa 455  Q
    |||||||||| ||||| |||||||| || | ||| | |||||||||  |||||| ||||||| |||||| |||||||||| | |||||||||||||||||    
T  22740818 gaaaatttcaattaactaaatatatagtttgtgtaaccacatttttttcagttgtgtgacca-tatttaaaagctgaaaaatatggtcacgcaactaaaa 22740720  T
Q  456 tgcgcgtgaccattatttttccacttagttaaccaaataaattatggaaaaataatggtcacg 518  Q
    |  |||||| ||||||||||||||||||||||||||||||||| || ||||||| | ||||||    
T  22740719 tatgcgtgatcattatttttccacttagttaaccaaataaattctgaaaaaatagtagtcacg 22740657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 360 - 578
Target Start/End: Complemental strand, 15958472 - 15958251
Alignment:
Q  360 aaaatttcagttaaccaaatatatggtctatgtgaacacatttttcagttgggtgaccactatttagaagctg-aaaatgtggtcacgcaactaaaatgc 458  Q
    ||||||||||||||| ||||||||||||| ||||| ||||||||| |||||  ||| |||||||||||||||| ||||||||||||||||| | |||||     
T  15958472 aaaatttcagttaactaaatatatggtctgtgtgaccacatttttaagttgcatga-cactatttagaagctgaaaaatgtggtcacgcaa-ttaaatgt 15958375  T
Q  459 gcgtgacca----ttatttttccacttagttaaccaaataaattatggaaaaataatggtcacgtaactnnnnnnntgtggtcacacagatcgtatatat 554  Q
    |||||| ||    || |||||  ||||| ||||||||||||||| || ||||||| |||||||  ||||       ||||||||||| || | ||||| |    
T  15958374 gcgtgatcacaatttttttttttacttatttaaccaaataaattctgaaaaaatagtggtcacacaactaaaaaaatgtggtcacactgaccatatattt 15958275  T
Q  555 ggttaactgaaatttttcagagtg 578  Q
    |||||||| |||||||||| ||||    
T  15958274 ggttaacttaaatttttcaaagtg 15958251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 421 - 497
Target Start/End: Complemental strand, 46943839 - 46943761
Alignment:
Q  421 atttagaagctgaaaatgtggtcacgcaactaaaatgcgcgtgaccatta--tttttccacttagttaaccaaataaat 497  Q
    |||||||||||||||||||| |||||||||||||||||||||||||| ||  ||||| |||||||||||||||||||||    
T  46943839 atttagaagctgaaaatgtgatcacgcaactaaaatgcgcgtgaccactattttttttcacttagttaaccaaataaat 46943761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 628 - 832
Target Start/End: Original strand, 45916517 - 45916725
Alignment:
Q  628 gtttgtttcgaggtaagaaattacattccttggaatgatattctcaggaataatatttataggaat---attcctacccacgtgttttgtaaaaatttag 724  Q
    ||||||||| | ||||||||||||||||||| |||||||||||  | ||||||||||  |||||||   | ||||||||| || ||| ||||||||||||    
T  45916517 gtttgtttcaatgtaagaaattacattccttagaatgatattccaacgaataatattcctaggaatgacactcctacccatgtatttggtaaaaatttag 45916616  T
Q  725 atttcttgggaacgttttagaaatgatttaatt-nnnnnnnnnnnnntggaaataaatgtgagtagtagtaagaatttatagcaagttgagttctattcc 823  Q
    ||||| ||  ||  |||||||||| ||||||||              |||||||| |||||||| | ||| |||||||||||||||||||||| |||||     
T  45916617 atttcctgaaaatattttagaaattatttaattaaaaaaaataaaaatggaaatatatgtgagtggcagtgagaatttatagcaagttgagttttattcg 45916716  T
Q  824 catgggaat 832  Q
    |||||||||    
T  45916717 catgggaat 45916725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 330 - 404
Target Start/End: Original strand, 28804902 - 28804977
Alignment:
Q  330 ttaatgtgtacacc-ttttgtactatttttgaaaatttcagttaaccaaatatatggtctatgtgaacacattttt 404  Q
    ||||| |||||||| |||||||| ||| | |||||||||||||||||||||||||||||||||||| |||||||||    
T  28804902 ttaatatgtacacccttttgtaccattctagaaaatttcagttaaccaaatatatggtctatgtgaccacattttt 28804977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 362 - 497
Target Start/End: Original strand, 32964706 - 32964852
Alignment:
Q  362 aatttcagttaaccaaatatatggtctatgtgaacacatttttcagttgggtgaccactattt----------agaagctgaaaa-tgtggtcacgcaac 450  Q
    ||||| ||||||| ||||||||||| | ||||| || |||||||| ||| |||||||||||||          |||||||||||| | |||||| | |||    
T  32964706 aatttaagttaactaaatatatggtatgtgtgaccatatttttcaattgtgtgaccactattttccagcatttagaagctgaaaaatatggtcatgtaac 32964805  T
Q  451 taaaatgcgcgtgaccattatttttccacttagttaaccaaataaat 497  Q
    |||||||| |||||||| |||||||||||||| |||||| |||||||    
T  32964806 taaaatgcacgtgaccactatttttccacttaattaacctaataaat 32964852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 360 - 424
Target Start/End: Original strand, 5083739 - 5083803
Alignment:
Q  360 aaaatttcagttaaccaaatatatggtctatgtgaacacatttttcagttgggtgaccactattt 424  Q
    |||||||||||||| |||||||||||||| ||||| ||||||||| ||||  |||||||||||||    
T  5083739 aaaatttcagttaatcaaatatatggtctttgtgaccacattttttagttacgtgaccactattt 5083803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 330 - 424
Target Start/End: Complemental strand, 22033253 - 22033158
Alignment:
Q  330 ttaatgtgtacaccttttgtactatttttgaaaatttcagttaaccaaatatatggtctatgtgaacaca-tttttcagttgggtgaccactattt 424  Q
    |||||||||||| | ||||||| ||| |  ||||||| ||||||||||||||||||||| ||||| || | ||||| ||||| |||||||||||||    
T  22033253 ttaatgtgtacatcctttgtaccattctgaaaaattttagttaaccaaatatatggtctgtgtgaccatattttttgagttgcgtgaccactattt 22033158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 360 - 422
Target Start/End: Complemental strand, 31303615 - 31303553
Alignment:
Q  360 aaaatttcagttaaccaaatatatggtctatgtgaacacatttttcagttgggtgaccactat 422  Q
    ||||||||||||||| ||||||||||| | ||||| ||||||||| ||||| |||||||||||    
T  31303615 aaaatttcagttaacaaaatatatggtatgtgtgaccacattttttagttgcgtgaccactat 31303553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 451 - 518
Target Start/End: Original strand, 5174910 - 5174977
Alignment:
Q  451 taaaatgcgcgtgaccattatttttccacttagttaaccaaataaattatggaaaaataatggtcacg 518  Q
    ||||||| ||||||||| ||||||| ||||||||||| |||||||||| || |||| || ||||||||    
T  5174910 taaaatgtgcgtgaccactatttttacacttagttaatcaaataaattctgaaaaattagtggtcacg 5174977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 330 - 404
Target Start/End: Original strand, 22032981 - 22033055
Alignment:
Q  330 ttaatgtgtacaccttttgtactatttttgaaaatttcagttaaccaaatatatggtctatgtgaacacattttt 404  Q
    |||||||||||| | ||||||| | | || ||||||| ||||||||||||||||||| | ||||| |||||||||    
T  22032981 ttaatgtgtacatcctttgtaccactctttaaaatttaagttaaccaaatatatggtatgtgtgaccacattttt 22033055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 360 - 424
Target Start/End: Original strand, 15958259 - 15958324
Alignment:
Q  360 aaaatttcagttaaccaaatatatggtctatgtgaacaca-tttttcagttgggtgaccactattt 424  Q
    ||||||| ||||||||||||||||||||  ||||| |||| ||||| ||||| |||||||||||||    
T  15958259 aaaatttaagttaaccaaatatatggtcagtgtgaccacatttttttagttgtgtgaccactattt 15958324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 360 - 424
Target Start/End: Complemental strand, 21548615 - 21548550
Alignment:
Q  360 aaaatttcagttaaccaaatatatggtctatgtgaacacattt-ttcagttgggtgaccactattt 424  Q
    ||||||||||||||| ||||||||||||| ||||| || |||| || ||||| |||||||||||||    
T  21548615 aaaatttcagttaactaaatatatggtctgtgtgatcatatttgtttagttgcgtgaccactattt 21548550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 360 - 424
Target Start/End: Complemental strand, 21589786 - 21589721
Alignment:
Q  360 aaaatttcagttaaccaaatatatggtctatgtgaacaca-tttttcagttgggtgaccactattt 424  Q
    ||||||||||||| ||||||||||||||| ||||| |||| ||||| |||||  ||||||||||||    
T  21589786 aaaatttcagttatccaaatatatggtctgtgtgaccacatttttttagttgcatgaccactattt 21589721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 627 - 684
Target Start/End: Original strand, 36441968 - 36442025
Alignment:
Q  627 ggtttgtttcgaggtaagaaattacattccttggaatgatattctcaggaataatatt 684  Q
    |||||||||| ||||||||||||| |||||||| |||||||||   ||||||||||||    
T  36441968 ggtttgtttcaaggtaagaaattatattccttgaaatgatatttctaggaataatatt 36442025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 531 - 583
Target Start/End: Original strand, 15958433 - 15958485
Alignment:
Q  531 tgtggtcacacagatcgtatatatggttaactgaaatttttcagagtggtaca 583  Q
    |||||||||||||| | ||||| | ||||||||||||||| ||||||||||||    
T  15958433 tgtggtcacacagaccatatatttagttaactgaaattttacagagtggtaca 15958485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 533 - 585
Target Start/End: Original strand, 22033186 - 22033238
Alignment:
Q  533 tggtcacacagatcgtatatatggttaactgaaatttttcagagtggtacaaa 585  Q
    |||||||||||| | ||||| ||||||||| |||||||||||| |||||||||    
T  22033186 tggtcacacagaccatatatttggttaactaaaatttttcagaatggtacaaa 22033238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 531 - 608
Target Start/End: Original strand, 28805142 - 28805223
Alignment:
Q  531 tgtggtcacacagatcgtatatatggttaactgaaatttttcagagtggtacaaaag----tacacgttaagggtgtctacc 608  Q
    |||||||||||| | | ||||| ||||||||| ||||||||||||||| |||||| |    ||||| |||||||||||||||    
T  28805142 tgtggtcacacataccatatatttggttaacttaaatttttcagagtgatacaaaggggtatacacattaagggtgtctacc 28805223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 531 - 587
Target Start/End: Original strand, 32964875 - 32964931
Alignment:
Q  531 tgtggtcacacagatcgtatatatggttaactgaaatttttcagagtggtacaaaag 587  Q
    |||||||||||||| | ||||||| ||||||| |||||||| |||||| ||||||||    
T  32964875 tgtggtcacacagaccatatatatagttaacttaaattttttagagtgatacaaaag 32964931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 414 - 455
Target Start/End: Complemental strand, 2887230 - 2887188
Alignment:
Q  414 gaccactatttagaagctg-aaaatgtggtcacgcaactaaaa 455  Q
    ||||||||||||||||||| |||||||||| ||||||||||||    
T  2887230 gaccactatttagaagctgaaaaatgtggttacgcaactaaaa 2887188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 360 - 425
Target Start/End: Complemental strand, 32964914 - 32964848
Alignment:
Q  360 aaaatttcagttaaccaaatatatggtctatgtgaacacat-ttttcagttgggtgaccactattta 425  Q
    ||||||| ||||||| | ||||||||||| ||||| ||||| |||| ||||| ||||||||||||||    
T  32964914 aaaatttaagttaactatatatatggtctgtgtgaccacatatttttagttgcgtgaccactattta 32964848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 360 - 424
Target Start/End: Complemental strand, 28805181 - 28805116
Alignment:
Q  360 aaaatttcagttaaccaaatatatggtctatgtgaacaca-tttttcagttgggtgaccactattt 424  Q
    ||||||| ||||||||||||||||||| | ||||| |||| ||||||||||| |||| ||| ||||    
T  28805181 aaaatttaagttaaccaaatatatggtatgtgtgaccacattttttcagttgcgtgatcacgattt 28805116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 102; Significance: 4e-50; HSPs: 44)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 102; E-Value: 4e-50
Query Start/End: Original strand, 330 - 585
Target Start/End: Original strand, 3823571 - 3823829
Alignment:
Q  330 ttaatgtgtacacct-tttgtactatttttgaaaatttcagttaaccaaatatatggtctatgtgaacacattttt-cagttgggtgaccactatttaga 427  Q
    ||||||||||||||  ||||||| | | | ||||||||||||||||||| |||||||||| ||||| ||||||||| | |||| |||||||||||||| |    
T  3823571 ttaatgtgtacacccctttgtaccactctcgaaaatttcagttaaccaattatatggtctgtgtgaccacattttttctgttgcgtgaccactatttata 3823670  T
Q  428 agctgaaaa---tgtggtcacgcaactaaaatgcgcgtgaccattatttttccacttagttaaccaaataaattatggaaaaataatggtcacgtaactn 524  Q
    |||||||||   | ||||||||||||||||||||| ||||||| | ||||||||||||||||||||||||||||||||||||||| |||||||| ||||     
T  3823671 agctgaaaaaaatatggtcacgcaactaaaatgcgtgtgaccact-tttttccacttagttaaccaaataaattatggaaaaatagtggtcacgcaacta 3823769  T
Q  525 nnnnnntgtggtcacacagatcgtatatatggttaactgaaatttttcagagtggtacaaa 585  Q
           |||||||||||||   ||||| |||||||||| |||||||| |||| |||||||    
T  3823770 aaaaac-gtggtcacacagacaatatatttggttaactggaatttttctgagtagtacaaa 3823829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 100; E-Value: 7e-49
Query Start/End: Original strand, 330 - 581
Target Start/End: Original strand, 3785882 - 3786135
Alignment:
Q  330 ttaatgtgtacacct-tttgtactatttttgaaaatttcagttaaccaaatatatggtctatgtgaacacattttt-cagttgggtgaccactatttaga 427  Q
    ||||||||||||||  ||||||| | | | ||||||||||||||||||| | |||||||| ||||| ||||||||| | |||  |||||||||||||| |    
T  3785882 ttaatgtgtacacccctttgtaccactctcgaaaatttcagttaaccaattttatggtctgtgtgaccacattttttctgttacgtgaccactatttata 3785981  T
Q  428 agctgaaaa--tgtggtcacgcaactaaaatgcgcgtgaccattatttttccacttagttaaccaaataaattatggaaaaataatggtcacgtaactnn 525  Q
    |||||||||  | ||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||| |||||||| ||||      
T  3785982 agctgaaaaaatatggtcacgcaactaaaatgcgcgtgaccact-tttttccacttagttaaccaaataaattatggaaaaatagtggtcacgcaactaa 3786080  T
Q  526 nnnnntgtggtcacacagatcgtatatatggttaactgaaatttttcagagtggta 581  Q
          |||||||||||||   ||||| |||||||||| |||||||| ||||||||    
T  3786081 aaaac-gtggtcacacagacaatatatttggttaactggaatttttctgagtggta 3786135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 100; E-Value: 7e-49
Query Start/End: Original strand, 359 - 516
Target Start/End: Complemental strand, 42638115 - 42637956
Alignment:
Q  359 gaaaatttcagttaaccaaatatatggtctatgtgaacacattttt-cagttgggtgaccactatttagaagctgaaaa-tgtggtcacgcaactaaaat 456  Q
    |||||||||||||||| ||||||||||| ||| ||| ||||||||| |||||| ||||||||||||||||||||||||| ||||||||||||||||||||    
T  42638115 gaaaatttcagttaactaaatatatggtatatatgaccacattttttcagttgcgtgaccactatttagaagctgaaaaatgtggtcacgcaactaaaat 42638016  T
Q  457 gcgcgtgaccattatttttccacttagttaaccaaataaattatggaaaaataatggtca 516  Q
    |||||| |||| |||||||| ||||||||||||||||||||| || ||||||| ||||||    
T  42638015 gcgcgtaaccactatttttcaacttagttaaccaaataaattctgaaaaaatagtggtca 42637956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 88; E-Value: 1e-41
Query Start/End: Original strand, 364 - 586
Target Start/End: Complemental strand, 26308794 - 26308570
Alignment:
Q  364 tttcagttaaccaaatatatggtctatgtgaacacatttttc-agttgggtgaccactatttagaagctgaa-aatgtggtcacgcaactaaaatgcgcg 461  Q
    |||||||||| |||||||||||| | ||||  |||||||||| | ||  | ||||||||||||||||||||| ||||||||||||||| |||||||||||    
T  26308794 tttcagttaatcaaatatatggtttgtgtggccacatttttccaattctgggaccactatttagaagctgaataatgtggtcacgcaattaaaatgcgcg 26308695  T
Q  462 tgaccattatttttccacttagttaaccaaataaattatggaaaaataatggtcacgtaactnnnnnnntgtggtcacacagatcgtatatatggttaac 561  Q
    |||||| |||||||||||||| ||||||||||||||| ||||||| || |||||||  ||||       |||||||||||| | | ||||| | ||||||    
T  26308694 tgaccactatttttccacttacttaaccaaataaattctggaaaattagtggtcacacaactaaaacaatgtggtcacacaaaccatatatttagttaac 26308595  T
Q  562 tgaaatttttcagagtggtacaaaa 586  Q
    ||| |||||||| |||| |||||||    
T  26308594 tgatatttttcaaagtgatacaaaa 26308570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 86; E-Value: 2e-40
Query Start/End: Original strand, 363 - 608
Target Start/End: Original strand, 19280152 - 19280402
Alignment:
Q  363 atttcagttaaccaaatatatggtctatgtgaacacattttt-cagttgggtgaccactatttagaagctgaaaa-tgtggtcacgcaactaaaatgcgc 460  Q
    |||| |||||||||||||||||||||  |||| ||||||||| ||| || ||||||||| |||||||| |||||| |||||||||||||||||||| |||    
T  19280152 attttagttaaccaaatatatggtctgagtgaccacattttttcagatgcgtgaccactgtttagaagttgaaaaatgtggtcacgcaactaaaattcgc 19280251  T
Q  461 gtgaccattatttttccacttagttaaccaaataaattatggaaaaataatggtcacgtaactnnnnnnntgtggtcacacagatcgtatatatggttaa 560  Q
    ||||||| || ||||||||||||||||||||||||||| || |||| || |||||||   |||       ||| |||||||||| | ||||| || ||||    
T  19280252 gtgaccacta-ttttccacttagttaaccaaataaattttgaaaaattagtggtcacaccacttaaaaaatgttgtcacacagaccatatatttgattaa 19280350  T
Q  561 ctgaaatttttcagagtggtacaaa----agtacacgttaagggtgtctacc 608  Q
    || ||| ||||||||||||||||||     |||||| |||||||||||||||    
T  19280351 ctaaaaattttcagagtggtacaaacgggtgtacacattaagggtgtctacc 19280402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 83; E-Value: 9e-39
Query Start/End: Original strand, 400 - 586
Target Start/End: Original strand, 31545608 - 31545795
Alignment:
Q  400 tttttcagttgggtgaccactatttagaagctgaaaa-tgtggtcacgcaactaaaatgcgcgtgaccattatttttccacttagttaaccaaataaatt 498  Q
    ||||||||||| || |||||||||||||||||||||| ||||||||| ||||||||||| || |||||| |||||||| ||||||||||| |||||||||    
T  31545608 tttttcagttgagtaaccactatttagaagctgaaaaatgtggtcacacaactaaaatgtgcatgaccactatttttctacttagttaacaaaataaatt 31545707  T
Q  499 atggaaaaataatggtcacgtaactnnnnnnntgtggtcacacagatcgtatatatggttaactgaaatttttcagagtggtacaaaa 586  Q
     |||||||||| |||||||  ||||       |||||||||| ||| | |||||  ||||| |||||||||||||||||| |||||||    
T  31545708 ctggaaaaatagtggtcacacaactaaaaaaatgtggtcacatagaccatatattaggttacctgaaatttttcagagtgatacaaaa 31545795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 82; E-Value: 4e-38
Query Start/End: Original strand, 360 - 516
Target Start/End: Complemental strand, 1705826 - 1705670
Alignment:
Q  360 aaaatttcagttaaccaaatatatggtctatgtgaacacatttttcagttgggtgaccactatttagaagctgaaaa-tgtggtcacgcaactaaaatgc 458  Q
    ||||||||||||||||||||| ||| | | ||||| || |||||| ||||| ||||||||||||||||||||||||| | |||||| |||||||||||||    
T  1705826 aaaatttcagttaaccaaatacatgatatgtgtgatcatattttt-agttgcgtgaccactatttagaagctgaaaaatatggtcatgcaactaaaatgc 1705728  T
Q  459 gcgtgaccattatttttccacttagttaaccaaataaattatggaaaaataatggtca 516  Q
    ||||||||| ||||||||| ||||||||||||||||| || ||||||| || ||||||    
T  1705727 gcgtgaccactatttttccccttagttaaccaaataatttctggaaaactagtggtca 1705670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 80; E-Value: 6e-37
Query Start/End: Original strand, 359 - 585
Target Start/End: Complemental strand, 4169255 - 4169039
Alignment:
Q  359 gaaaatttcagttaaccaaatatatggtctatgtgaacacatttttcagttgggtgaccactatttagaagctgaaaa-tgtggtcacgcaactaaaatg 457  Q
    |||||||||||||||| ||||||||||||||||||| ||||||        | ||||||||||||||||||||||||| |||||| ||||||||||||||    
T  4169255 gaaaatttcagttaactaaatatatggtctatgtgatcacatt--------gcgtgaccactatttagaagctgaaaaatgtggtaacgcaactaaaatg 4169164  T
Q  458 cgcgtgaccattatttttccacttagttaaccaaataaattatggaaaaataatggtcacgtaactnnnnnnntgtggtcacacagatcgtatatatggt 557  Q
     ||||||||| |||||||||| ||||||||||||||||||| || ||||||| | |||| | ||||       || |||||| || | | |||   ||||    
T  4169163 tgcgtgaccactatttttccatttagttaaccaaataaattctgaaaaaatagtagtcatgcaactgaaaaaatgaggtcacgcataccatat---tggt 4169067  T
Q  558 taactgaaatttttcagagtggtacaaa 585  Q
    |||||||||||||||||||| |||||||    
T  4169066 taactgaaatttttcagagtagtacaaa 4169039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 362 - 515
Target Start/End: Original strand, 44080209 - 44080364
Alignment:
Q  362 aatttcagttaaccaaatatatggtctatgtgaacacattttt--cagttgggtgaccactatttagaagctgaaaa-tgtggtcacgcaactaaaatgc 458  Q
    ||||||||||||||||||||||  ||| ||||| || ||||||  |||||| |||||||||||||||||| |||||| |||||||||  ||||||||||     
T  44080209 aatttcagttaaccaaatatataatctgtgtgaccatattttttgcagttgcgtgaccactatttagaagttgaaaaatgtggtcaca-aactaaaatgt 44080307  T
Q  459 gcgtgaccattatttttccacttagttaaccaaataaattatggaaaaataatggtc 515  Q
    ||||| ||| |||||||||||||||||||||||| ||||| |||||||||| |||||    
T  44080308 gcgtgcccactatttttccacttagttaaccaaaaaaattttggaaaaatagtggtc 44080364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 360 - 517
Target Start/End: Original strand, 19624257 - 19624415
Alignment:
Q  360 aaaatttcagttaaccaaatatatggtctatgtgaacacattt-ttcagttgggtgaccactatttagaagctgaaa-atgtggtcacgcaactaaaatg 457  Q
    |||||||||||||| ||||||||| ||||| |||| || |||| |||||||| ||||||| |||||| ||||| ||| |||||| ||| |||||||||||    
T  19624257 aaaatttcagttaatcaaatatatagtctaagtgatcatatttcttcagttgtgtgacca-tatttataagctaaaatatgtggccacccaactaaaatg 19624355  T
Q  458 cgcgtgaccattatttttccacttagttaaccaaataaattatggaaaaataatggtcac 517  Q
    | |||||||| |||||||||||||||||||||| ||||||| |||||||||  |||||||    
T  19624356 cacgtgaccactatttttccacttagttaaccacataaattctggaaaaattgtggtcac 19624415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 343 - 509
Target Start/End: Complemental strand, 27079470 - 27079303
Alignment:
Q  343 cttttgtactatttttgaaaatttcagttaaccaaatatatggtctatgtgaacaca-tttttcagttgggtgaccactatttagaagctgaaaatgtgg 441  Q
    ||||||| ||| ||| ||||||||| |||||||||||||||||||| ||||| |||| |||||||||||  ||||||| ||||        |||||||||    
T  27079470 cttttgtgctactttagaaaatttcggttaaccaaatatatggtctgtgtgaccacaatttttcagttgcatgaccacaattttttcaaaaaaaatgtgg 27079371  T
Q  442 tcacgcaactaaaatgcgcgtgaccattatttttccacttagttaaccaaataaattatggaaaaata 509  Q
    ||||| | ||||||||||||||||||| |||||||||||||||||| |||||||||||| ||||||||    
T  27079370 tcacgtagctaaaatgcgcgtgaccatcatttttccacttagttaatcaaataaattatagaaaaata 27079303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 343 - 509
Target Start/End: Complemental strand, 27085267 - 27085100
Alignment:
Q  343 cttttgtactatttttgaaaatttcagttaaccaaatatatggtctatgtgaacaca-tttttcagttgggtgaccactatttagaagctgaaaatgtgg 441  Q
    ||||||| ||| ||| ||||||||| |||||||||||||||||||| ||||| |||| |||||||||||  ||||||| ||||        |||||||||    
T  27085267 cttttgtgctactttagaaaatttcggttaaccaaatatatggtctgtgtgaccacaatttttcagttgcatgaccacaattttttcaaaaaaaatgtgg 27085168  T
Q  442 tcacgcaactaaaatgcgcgtgaccattatttttccacttagttaaccaaataaattatggaaaaata 509  Q
    ||||| | ||||||||||||||||||| |||||||||||||||||| |||||||||||| ||||||||    
T  27085167 tcacgtagctaaaatgcgcgtgaccatcatttttccacttagttaatcaaataaattatagaaaaata 27085100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 366 - 585
Target Start/End: Original strand, 5341833 - 5342054
Alignment:
Q  366 tcagttaaccaaatatatggtctatgtgaacacatttttc-agttgggtgaccactatttagaagctgaaaa-tgtggtcacgcaactaaaatgcgcgtg 463  Q
    ||||||||  ||||||||||| | ||||| || ||||||  || || |||||||||||||||||| |||||| ||||||||  |||||||||| |   ||    
T  5341833 tcagttaattaaatatatggtttgtgtgaccatatttttttagctgcgtgaccactatttagaagttgaaaaatgtggtcatacaactaaaatacatatg 5341932  T
Q  464 accattatttttccacttagttaaccaaataaattatggaaaaataatggtcacgtaactnnnnnnntgtggtcacacagatcgtatatatggttaactg 563  Q
    |||| |||||||||||||||||||||||||||||| || ||| |||||||| ||  ||||       |||||||||||||| | |||||  | |||||||    
T  5341933 accactatttttccacttagttaaccaaataaattctgaaaacataatggttacacaactaaaaaaatgtggtcacacagaccatatattcgattaactg 5342032  T
Q  564 aaatttttcagagtggtacaaa 585  Q
    |||||||||||||| |||||||    
T  5342033 aaatttttcagagtcgtacaaa 5342054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 68; E-Value: 8e-30
Query Start/End: Original strand, 400 - 587
Target Start/End: Original strand, 22432322 - 22432510
Alignment:
Q  400 tttttcagttgggtgaccactatttagaagctgaaaa-tgtggtcacgcaactaaaatgcgcgtgaccattatttttccacttagttaaccaaataaatt 498  Q
    ||||||||||| ||| |||||||||| |||||||||| ||||||||  ||||||||||||| ||| ||| ||||||||||| ||||| ||||||||||||    
T  22432322 tttttcagttgcgtgtccactatttaaaagctgaaaaatgtggtcaatcaactaaaatgcgtgtgtccactatttttccacatagttgaccaaataaatt 22432421  T
Q  499 atggaaaaataatggtcacgtaactnnnnnnntgtggtcacacagatcgtatatatggttaactgaaatttttcagagtggtacaaaag 587  Q
    ||| ||||||| |||||| | ||||       ||| |||||||||| | ||||| || || ||| |||||||||| |||| ||||||||    
T  22432422 atgaaaaaatagtggtcatgcaactaaaaaaatgtagtcacacagaccatatatttgatttactcaaatttttcaaagtgctacaaaag 22432510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 65; E-Value: 5e-28
Query Start/End: Original strand, 412 - 523
Target Start/End: Original strand, 42481304 - 42481416
Alignment:
Q  412 gtgaccactatttagaagctgaaaa-tgtggtcacgcaactaaaatgcgcgtgaccattatttttccacttagttaaccaaataaattatggaaaaataa 510  Q
    |||||||||||||| || ||||||| | ||||||| |||||||||||  ||||||||||||||||| ||||||||||||||||||||| || ||||||||    
T  42481304 gtgaccactatttaaaaactgaaaaatatggtcacacaactaaaatgtacgtgaccattatttttctacttagttaaccaaataaattctgaaaaaataa 42481403  T
Q  511 tggtcacgtaact 523  Q
    |||||| ||||||    
T  42481404 tggtcatgtaact 42481416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 360 - 498
Target Start/End: Complemental strand, 9710876 - 9710742
Alignment:
Q  360 aaaatttcagttaaccaaatatatggtctatgtgaacacattttt-cagttgggtgaccactatttagaagctgaaaa-tgtggtcacgcaactaaaatg 457  Q
    |||||||||||||||||||||||||||     ||| || |||||| | |||| |||||||||| |||||||||||||| |||||||||||||||||| |     
T  9710876 aaaatttcagttaaccaaatatatggt-----tgaccatattttttcggttgcgtgaccactacttagaagctgaaaactgtggtcacgcaactaaa-ta 9710783  T
Q  458 cgcgtgaccattatttttccacttagttaaccaaataaatt 498  Q
    | | |||||| ||||||||||||||||||||||||||||||    
T  9710782 cacttgaccactatttttccacttagttaaccaaataaatt 9710742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 421 - 497
Target Start/End: Complemental strand, 27335479 - 27335402
Alignment:
Q  421 atttagaagctgaaaa-tgtggtcacgcaactaaaatgcgcgtgaccattatttttccacttagttaaccaaataaat 497  Q
    |||||||||||||||| ||||||||| |||||||||| | |||||||| |||||||||||||||||||||||||||||    
T  27335479 atttagaagctgaaaaatgtggtcacacaactaaaatacacgtgaccactatttttccacttagttaaccaaataaat 27335402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 316 - 466
Target Start/End: Original strand, 11509808 - 11509962
Alignment:
Q  316 gattgatagacacg-ttaatgtgtacacct-tttgtactatttttgaaaatttcagttaaccaaatatatggtctatgtgaacacattttt-cagttggg 412  Q
    |||||||||||||  ||||||||||||||  ||||||| | | || |||||||||  |||||||||||  | | | ||||| ||||||||| || ||| |    
T  11509808 gattgatagacacacttaatgtgtacacccctttgtaccactcttaaaaatttcaaataaccaaatatgcgatttgtgtgaccacattttttcacttgcg 11509907  T
Q  413 tgaccactatttagaagctgaaaa-tgtggtcacgcaactaaaatgcgcgtgacc 466  Q
    |||||  ||||||||||||||||| ||||||||||||||||||||||||||||||    
T  11509908 tgacctttatttagaagctgaaaaatgtggtcacgcaactaaaatgcgcgtgacc 11509962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 420 - 507
Target Start/End: Complemental strand, 13358189 - 13358101
Alignment:
Q  420 tatttagaagctgaaaa-tgtggtcacgcaactaaaatgcgcgtgaccattatttttccacttagttaaccaaataaattatggaaaaa 507  Q
    ||||||||||||||||| | ||||||| ||| |||||||||||| |||| ||||||||||| |||||||||||||||||| || |||||    
T  13358189 tatttagaagctgaaaaatatggtcacacaattaaaatgcgcgttaccactatttttccacatagttaaccaaataaattttgaaaaaa 13358101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 433 - 575
Target Start/End: Original strand, 39126190 - 39126333
Alignment:
Q  433 aaaatgtggtcacgcaactaaaatgcgcgtgaccattatttttccacttagttaaccaaataaa--ttatggaaaaataatggtcacgtaactnnnnnnn 530  Q
    |||||||||| |||||||||||| ||||| || || ||||||||||||||||||||||||||||  |||   ||||||| | |||||| ||||           
T  39126190 aaaatgtggttacgcaactaaaa-gcgcgcgatcactatttttccacttagttaaccaaataaattttaaaaaaaaatagtagtcacgcaactaaaaaaa 39126288  T
Q  531 tgtggtcacacagatcgtatatatggttaactgaaatttttcaga 575  Q
    ||| |||||||||||| ||||| ||||||||| ||||||||||||    
T  39126289 tgttgtcacacagatcatatatttggttaacttaaatttttcaga 39126333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 446 - 570
Target Start/End: Original strand, 11501309 - 11501433
Alignment:
Q  446 gcaactaaaatgcgcgtgaccattatttttccacttagttaaccaaataaattatggaaaaataatggtcacgtaactnnnnnnntgtggtcacacagat 545  Q
    |||||||||||| ||||||||| |||||||||| ||||||||||||||||||| |  ||||||| || | ||| ||||       || ||||||||||||    
T  11501309 gcaactaaaatgtgcgtgaccactatttttccaattagttaaccaaataaattttaaaaaaatagtgctaacgcaactaaaaaactgcggtcacacagat 11501408  T
Q  546 cgtatatatggttaactgaaatttt 570  Q
    | ||||| ||||||||| |||||||    
T  11501409 catatatttggttaacttaaatttt 11501433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 333 - 482
Target Start/End: Original strand, 23163252 - 23163404
Alignment:
Q  333 atgtgtacaccttttgtactatttttgaaaatttcagttaaccaaatatatggtctatgtgaacacattttt---cagttgggtgaccactatttagaag 429  Q
    ||||||| ||| ||||||| | | | |||||| |||||||| | ||||||||||||||||||  ||||||||   ||||||  |||||||||| |||| |    
T  23163252 atgtgtataccctttgtaccactctcgaaaatatcagttaatctaatatatggtctatgtgactacattttttatcagttgcatgaccactatgtaga-g 23163350  T
Q  430 ctgaaaa-tgtggtcacgcaactaaaatgcgcgtgaccattatttttccactta 482  Q
    ||||||| | ||||||| |||||||||||| ||||| |||||||||| ||||||    
T  23163351 ctgaaaaatatggtcacacaactaaaatgcacgtgatcattattttttcactta 23163404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 433 - 498
Target Start/End: Complemental strand, 34627382 - 34627317
Alignment:
Q  433 aaaatgtggtcacgcaactaaaatgcgcgtgaccattatttttccacttagttaaccaaataaatt 498  Q
    |||||||||||||||||||||||| |  || ||||||||||||||| |||||||||||||||||||    
T  34627382 aaaatgtggtcacgcaactaaaatacatgtaaccattatttttccatttagttaaccaaataaatt 34627317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 360 - 509
Target Start/End: Original strand, 27707625 - 27707775
Alignment:
Q  360 aaaatttcagttaaccaaatatatggtctatgtgaacacattttt-cagttgggtgaccactatttagaagctgaaaa-tgtggtcacgcaactaaaatg 457  Q
    |||| |||| |||| |||||||||||| | ||||  ||||||||| || ||| |||||||| |||| ||| || |||| ||||||| | |||||||||||    
T  27707625 aaaaattcaattaatcaaatatatggtttgtgtgcccacattttttcaattgtgtgaccac-attttgaaactaaaaaatgtggtcgcacaactaaaatg 27707723  T
Q  458 cgcgtgaccattatttttccacttagttaaccaaataaattatggaaaaata 509  Q
     || |||||| ||||||| |||||  ||||||||||||||| ||||||||||    
T  27707724 tgcatgaccactattttttcacttgattaaccaaataaattctggaaaaata 27707775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 628 - 757
Target Start/End: Original strand, 38140167 - 38140299
Alignment:
Q  628 gtttgtttcgaggtaagaaattacattccttggaatgatattctcaggaataatatttataggaat---attcctacccacgtgttttgtaaaaatttag 724  Q
    ||||||||| || ||||||||||||||  |||||||||||||||| | |||||||||| |||||||   ||||||| | | |||||| |||| ||||| |    
T  38140167 gtttgtttcaagataagaaattacatttattggaatgatattctccgaaataatatttttaggaataacattcctatctatgtgtttggtaagaattttg 38140266  T
Q  725 atttcttgggaacgttttagaaatgatttaatt 757  Q
    |||| |  |||| | ||||||||| ||||||||    
T  38140267 atttttcaggaatgctttagaaattatttaatt 38140299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 421 - 497
Target Start/End: Complemental strand, 27365085 - 27365008
Alignment:
Q  421 atttagaagctgaaaa-tgtggtcacgcaactaaaatgcgcgtgaccattatttttccacttagttaaccaaataaat 497  Q
    |||||||| ||||||| ||| |||||||| ||||||| || ||||||| |||||||||||||| ||||||||||||||    
T  27365085 atttagaaactgaaaaatgtagtcacgcagctaaaatacgtgtgaccactatttttccacttaattaaccaaataaat 27365008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 345 - 421
Target Start/End: Complemental strand, 27040760 - 27040683
Alignment:
Q  345 tttgtactatttttgaaaatttcagttaaccaaatatatggtctatgtgaacac-atttttcagttgggtgaccacta 421  Q
    ||||||||| | | ||||||||| |||||||||||||||| ||| ||||| ||| |||||||||||| ||||||||||    
T  27040760 tttgtactactctagaaaatttcggttaaccaaatatatgatctgtgtgatcacaatttttcagttgcgtgaccacta 27040683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 360 - 424
Target Start/End: Complemental strand, 31545779 - 31545714
Alignment:
Q  360 aaaatttcagttaaccaaatatatggtctatgtgaacaca-tttttcagttgggtgaccactattt 424  Q
    |||||||||| ||||| |||||||||||||||||| |||| ||||| ||||| |||||||||||||    
T  31545779 aaaatttcaggtaacctaatatatggtctatgtgaccacatttttttagttgtgtgaccactattt 31545714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 360 - 424
Target Start/End: Complemental strand, 3786124 - 3786060
Alignment:
Q  360 aaaatttcagttaaccaaatatatggtctatgtgaacacatttttcagttgggtgaccactattt 424  Q
    |||||| ||||||||||||||||| |||| ||||| ||| ||||| ||||| |||||||||||||    
T  3786124 aaaattccagttaaccaaatatattgtctgtgtgaccacgttttttagttgcgtgaccactattt 3786060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 360 - 424
Target Start/End: Complemental strand, 3823814 - 3823750
Alignment:
Q  360 aaaatttcagttaaccaaatatatggtctatgtgaacacatttttcagttgggtgaccactattt 424  Q
    |||||| ||||||||||||||||| |||| ||||| ||| ||||| ||||| |||||||||||||    
T  3823814 aaaattccagttaaccaaatatattgtctgtgtgaccacgttttttagttgcgtgaccactattt 3823750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 433 - 497
Target Start/End: Complemental strand, 27326111 - 27326047
Alignment:
Q  433 aaaatgtggtcacgcaactaaaatgcgcgtgaccattatttttccacttagttaaccaaataaat 497  Q
    |||||||||||||||||||||||| |  ||||||| |||||||||| || |||||| ||||||||    
T  27326111 aaaatgtggtcacgcaactaaaatacatgtgaccactatttttccagttggttaactaaataaat 27326047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 433 - 497
Target Start/End: Complemental strand, 27332348 - 27332284
Alignment:
Q  433 aaaatgtggtcacgcaactaaaatgcgcgtgaccattatttttccacttagttaaccaaataaat 497  Q
    |||||||||||||||||||||||| |  ||||||| |||||||||| || |||||| ||||||||    
T  27332348 aaaatgtggtcacgcaactaaaatacatgtgaccactatttttccagttggttaactaaataaat 27332284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 533 - 585
Target Start/End: Complemental strand, 44080244 - 44080192
Alignment:
Q  533 tggtcacacagatcgtatatatggttaactgaaatttttcagagtggtacaaa 585  Q
    |||||||||||||  ||||| ||||||||||||||| ||||||||||||||||    
T  44080244 tggtcacacagattatatatttggttaactgaaattgttcagagtggtacaaa 44080192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 548 - 585
Target Start/End: Original strand, 9710854 - 9710891
Alignment:
Q  548 tatatatggttaactgaaatttttcagagtggtacaaa 585  Q
    ||||| ||||||||||||||||||||||||||||||||    
T  9710854 tatatttggttaactgaaatttttcagagtggtacaaa 9710891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 330 - 424
Target Start/End: Original strand, 33488214 - 33488313
Alignment:
Q  330 ttaatgtgtacacct-tttgtactatttttgaaaattt-cagttaaccaaatatatggtctatgtgaacacatttt---tcagttgggtgaccactattt 424  Q
    ||||||||||||||| ||||||||||| |  ||||||| ||||||| ||||||||| |||| ||||| ||||||||   ||||||| |||||||| ||||    
T  33488214 ttaatgtgtacacctctttgtactattctgaaaaattttcagttaatcaaatatatagtctgtgtgatcacattttttttcagttgtgtgaccacaattt 33488313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 628 - 692
Target Start/End: Complemental strand, 31814265 - 31814202
Alignment:
Q  628 gtttgtttcgaggtaagaaattacattccttggaatgatattctcaggaataatatttataggaa 692  Q
    ||||||||  |||||||||||||||||| ||  ||||||||| ||||||||||||||| ||||||    
T  31814265 gtttgttttaaggtaagaaattacattctttt-aatgatattttcaggaataatatttttaggaa 31814202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 531 - 607
Target Start/End: Complemental strand, 3823641 - 3823561
Alignment:
Q  531 tgtggtcacacagatcgtatatatggttaactgaaatttttcagagtggtacaaa----agtacacgttaagggtgtctac 607  Q
    |||||||||||||| | ||||  |||||||||||||||||  |||||||||||||     |||||| ||||||||||||||    
T  3823641 tgtggtcacacagaccatataattggttaactgaaattttcgagagtggtacaaaggggtgtacacattaagggtgtctac 3823561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 371 - 410
Target Start/End: Original strand, 11501270 - 11501309
Alignment:
Q  371 taaccaaatatatggtctatgtgaacacatttttcagttg 410  Q
    |||||||||||||||||| ||||| |||||||||||||||    
T  11501270 taaccaaatatatggtctgtgtgaccacatttttcagttg 11501309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 531 - 585
Target Start/End: Complemental strand, 11501298 - 11501244
Alignment:
Q  531 tgtggtcacacagatcgtatatatggttaactgaaatttttcagagtggtacaaa 585  Q
    |||||||||||||| | ||||| ||||||  ||||| ||||||||||||||||||    
T  11501298 tgtggtcacacagaccatatatttggttatttgaaaattttcagagtggtacaaa 11501244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 531 - 585
Target Start/End: Complemental strand, 11509893 - 11509839
Alignment:
Q  531 tgtggtcacacagatcgtatatatggttaactgaaatttttcagagtggtacaaa 585  Q
    |||||||||||| |||| |||| ||||||  |||||||||| |||||||||||||    
T  11509893 tgtggtcacacaaatcgcatatttggttatttgaaatttttaagagtggtacaaa 11509839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 459 - 497
Target Start/End: Original strand, 18733538 - 18733576
Alignment:
Q  459 gcgtgaccattatttttccacttagttaaccaaataaat 497  Q
    |||||| || |||||||||||||||||||||||||||||    
T  18733538 gcgtgagcactatttttccacttagttaaccaaataaat 18733576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #42
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 438 - 488
Target Start/End: Original strand, 23163787 - 23163837
Alignment:
Q  438 gtggtcacgcaactaaaatgcgcgtgaccattatttttccacttagttaac 488  Q
    ||||||||||||||||||||  |||||||| ||||| | ||||||||||||    
T  23163787 gtggtcacgcaactaaaatgtacgtgaccactatttcttcacttagttaac 23163837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #43
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 628 - 670
Target Start/End: Original strand, 37052195 - 37052237
Alignment:
Q  628 gtttgtttcgaggtaagaaattacattccttggaatgatattc 670  Q
    ||||||||| ||| |||||||||||||||||||||||| ||||    
T  37052195 gtttgtttcaaggaaagaaattacattccttggaatgacattc 37052237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #44
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 363 - 436
Target Start/End: Original strand, 41571797 - 41571871
Alignment:
Q  363 atttcagttaaccaaatatatggtctatgtgaacaca-tttttcagttgggtgaccactatttagaagctgaaaa 436  Q
    |||||||| || |||||||||||| ||||| | |||| ||||||||||  |||||||||||||| ||| ||||||    
T  41571797 atttcagtcaatcaaatatatggtatatgtaaccacattttttcagttacgtgaccactatttaaaagttgaaaa 41571871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 99; Significance: 3e-48; HSPs: 33)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 99; E-Value: 3e-48
Query Start/End: Original strand, 359 - 523
Target Start/End: Original strand, 16583546 - 16583712
Alignment:
Q  359 gaaaatttcagttaaccaaatatatggtctatgtgaacacattttt-cagttgggtgaccactatttagaagctgaaaa-tgtggtcacgcaactaaaat 456  Q
    ||||||||||||||||||||||||||||  |||||| ||||||||| |||||| ||||||||||||||||||||||||| | || ||| |||||||||||    
T  16583546 gaaaatttcagttaaccaaatatatggttgatgtgaccacattttttcagttgcgtgaccactatttagaagctgaaaaatatgatcatgcaactaaaat 16583645  T
Q  457 gcgcgtgaccattatttttccacttagttaaccaaataaattatggaaaaataatggtcacgtaact 523  Q
    ||||||||||| |||||||||||||| ||||||||||||||||||| |||||| | |||||| ||||    
T  16583646 gcgcgtgaccactatttttccacttaattaaccaaataaattatggtaaaatagtagtcacgcaact 16583712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 98; E-Value: 1e-47
Query Start/End: Original strand, 372 - 587
Target Start/End: Complemental strand, 1966979 - 1966764
Alignment:
Q  372 aaccaaatatatggtctatgtgaacacatttttc--agttgggtgaccactatttagaagctgaaaa-tgtggtcacgcaactaaaatgcgcgtgaccat 468  Q
    |||||||||||||   ||||||| |||||||||   ||||| ||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||     
T  1966979 aaccaaatatatgacatatgtgaccacattttttttagttgcgtgaccactatttagaagctgaaaaatgtggtcacgcaactaaa-tgcgcgtgaccac 1966881  T
Q  469 tatttttccacttagttaaccaaataaattatggaaaaataatggtcacgtaactnnnnnnntgtggtcacacagatcgtatatatggttaactgaaatt 568  Q
    |||||||||||||| ||||||||||||||| ||||||| || |||||||| ||||       |||||||||||||| | ||||| ||||||||||||| |    
T  1966880 tatttttccacttaattaaccaaataaattctggaaaactagtggtcacgcaact-aaaaaatgtggtcacacagaccatatatttggttaactgaaa-t 1966783  T
Q  569 tttcagagtggtacaaaag 587  Q
    |||||||||||||||||||    
T  1966782 tttcagagtggtacaaaag 1966764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 98; E-Value: 1e-47
Query Start/End: Original strand, 360 - 523
Target Start/End: Original strand, 9809025 - 9809190
Alignment:
Q  360 aaaatttcagttaaccaaatatatggtctatgtgaacacattttt-cagttgggtgaccactatttagaagctgaaaa-tgtggtcacgcaactaaaatg 457  Q
    |||| |||||||||| |||||||||||||  |||| ||||||||| |||||| ||||||||||||||||||||||||| ||| ||||||||||| |||||    
T  9809025 aaaaattcagttaactaaatatatggtctgcgtgaccacattttttcagttgcgtgaccactatttagaagctgaaaaatgtagtcacgcaactcaaatg 9809124  T
Q  458 cgcgtgaccattatttttccacttagttaaccaaataaattatggaaaaataatggtcacgtaact 523  Q
    |||||||||| |||||||||| |||||||||||||||| ||||||||||| |||||||||| ||||    
T  9809125 cgcgtgaccactatttttccatttagttaaccaaataatttatggaaaaaaaatggtcacgcaact 9809190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 92; E-Value: 4e-44
Query Start/End: Original strand, 359 - 585
Target Start/End: Original strand, 42908519 - 42908745
Alignment:
Q  359 gaaaatttcagttaaccaaatatatggtctatgtgaacacatttttcagttgggtgaccactatttagaagctgaaaa--tgtggtcacgcaactaaaat 456  Q
    |||||||| ||| ||||||||||||||||| | ||| || |||||||||||| |||||||| ||||| ||| ||||||  |||| |||||||||||||||    
T  42908519 gaaaattttagtgaaccaaatatatggtctgtttgaccatatttttcagttgtgtgaccac-atttaaaagttgaaaaaatgtgatcacgcaactaaaat 42908617  T
Q  457 gcgcgtgaccattatttttccacttagttaaccaaataaattatggaaaaataatggtcacgtaactnnnnnnntgtggtcacacagatcgtatatatgg 556  Q
    ||||||||||| ||| ||||| |||||||||||||||||||| |||||||||| |||| ||  ||||       |||||||||||| | | ||||| |||    
T  42908618 gcgcgtgaccactatgtttcctcttagttaaccaaataaattctggaaaaatagtggtgactcaact-aaaaaatgtggtcacacataccatatatttgg 42908716  T
Q  557 ttaactgaaatttttcagagtggtacaaa 585  Q
    |||||| ||||||||||||||||||||||    
T  42908717 ttaacttaaatttttcagagtggtacaaa 42908745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 88; E-Value: 1e-41
Query Start/End: Original strand, 360 - 585
Target Start/End: Complemental strand, 17633499 - 17633273
Alignment:
Q  360 aaaatttcagttaaccaaatatatggtctatgtgaacaca-tttttcagttgggtgaccactatttagaagct--gaaaatgtggtcacgcaactaaaat 456  Q
    ||||||||||||||||||||||||||||| ||||| |||| ||||||||||| |||||||| || |||||| |   ||||| ||||||||||||||||||    
T  17633499 aaaatttcagttaaccaaatatatggtctgtgtgaccacattttttcagttgcgtgaccac-atctagaagtttgaaaaatatggtcacgcaactaaaat 17633401  T
Q  457 gcgcgtgaccattatttttccacttagttaaccaaataaattatggaaaaataatggtcacgtaactnnnnnnntgtggtcacacagatcgtatatatgg 556  Q
    ||||||||||| |||||||  ||||||||||||||||||||| |||| ||||  |||||| | | ||       |||||||||||||| | ||||| |||    
T  17633400 gcgcgtgaccactattttttaacttagttaaccaaataaattttggacaaattgtggtcatgcatct-aaaaaatgtggtcacacagaccatatatttgg 17633302  T
Q  557 ttaactgaaatttttcagagtggtacaaa 585  Q
    |||||| ||||||||| ||||||||||||    
T  17633301 ttaactaaaatttttcggagtggtacaaa 17633273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 87; E-Value: 4e-41
Query Start/End: Original strand, 345 - 502
Target Start/End: Complemental strand, 55666997 - 55666840
Alignment:
Q  345 tttgtactatttttgaaaatttcagttaaccaaatatatggtctatgtgaacacatttttcagttgggtgaccactatttagaagctg-aaaatgtggtc 443  Q
    ||||||| | ||| |||||||||||||||| ||||||||||||| ||||| ||||||||||||||| ||||||| |||||| |||||| |||| ||||||    
T  55666997 tttgtaccactttcgaaaatttcagttaactaaatatatggtctgtgtgaccacatttttcagttgcgtgaccattatttataagctgaaaaacgtggtc 55666898  T
Q  444 acgcaactaaaatgcgcgtgaccattatttttccacttagttaaccaaataaattatgg 502  Q
    ||| ||||||||||  |||||||| ||||||||||||||||||| ||||||||||||||    
T  55666897 acg-aactaaaatgttcgtgaccactatttttccacttagttaagcaaataaattatgg 55666840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 628 - 898
Target Start/End: Complemental strand, 34941244 - 34940974
Alignment:
Q  628 gtttgtttcgaggtaagaaattacattccttggaatgatattctcaggaataatatttataggaata---ttcctacccacgtgttttgtaaaaatttag 724  Q
    ||||||||| ||| ||||||||||||||||| |||||| ||||| |||||||||||||  |||||||   |||||||||| |||||| ||||||||| ||    
T  34941244 gtttgtttcaaggcaagaaattacattccttagaatgacattcttaggaataatatttcaaggaataacattcctacccatgtgtttggtaaaaatt-ag 34941146  T
Q  725 atttcttgggaacgttttagaaatgatttaattnnnnnnnnnnnnntggaaataaatgtgagtagtagtaagaatttatagcaagttgagttctattccc 824  Q
    ||||  | |||| ||||||||||| | || |||             || ||||||||||  |||||||| |||||||||||||||||||||| |||| ||    
T  34941145 atttacttggaatgttttagaaattaattgattaaaaaaataaaaatgaaaataaatgtttgtagtagtgagaatttatagcaagttgagttttatttcc 34941046  T
Q  825 atgggaatgtagaattctcatccttttaagtatgggaataaggaatagaagaaatcatgtgtaaataacatttc 898  Q
    ||||||||||  ||||||||| | |||||  ||| ||||||  |||||||||||||||||||||||||||||||    
T  34941045 atgggaatgttaaattctcattc-tttaaacatgagaataa-caatagaagaaatcatgtgtaaataacatttc 34940974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 335 - 509
Target Start/End: Complemental strand, 35544603 - 35544427
Alignment:
Q  335 gtgtacacctt-ttgtactatttttgaaaatttcagttaaccaaatatatggtctatgtgaacaca-tttttcagttgggtgaccactatttagaagctg 432  Q
    ||||||||||| || || || |||| |||||||||||||| |||||||||||| | ||||| |||| |||||| ||||  ||||||||||||||||||||    
T  35544603 gtgtacaccttattatattacttttaaaaatttcagttaatcaaatatatggtatgtgtgatcacattttttccgttgtatgaccactatttagaagctg 35544504  T
Q  433 -aaaatgtggtcacgcaactaaaatgcgcgtgaccattatttttccacttagttaaccaaataaattatggaaaaata 509  Q
     ||||||||||||||||||| ||||||| |||| || |||||||||||||| ||||| ||||||||| |||| |||||    
T  35544503 aaaaatgtggtcacgcaact-aaatgcgtgtgatcactatttttccacttaattaactaaataaattttggataaata 35544427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 364 - 506
Target Start/End: Complemental strand, 8740945 - 8740801
Alignment:
Q  364 tttcagttaaccaaatatatggtctatgtgaacacattttt--cagttgggtgaccactatttagaagctgaaaa-tgtggtcacgcaactaaaatgcgc 460  Q
    |||||||||| ||||| |||| ||| ||||| || ||||||  |||||| |||| |||||||||||||||||||| |||||||||| | |||||||||||    
T  8740945 tttcagttaatcaaatgtatgatctgtgtgaccatatttttttcagttgcgtgatcactatttagaagctgaaaaatgtggtcacgta-ctaaaatgcgc 8740847  T
Q  461 gtgaccattatttttccacttagttaaccaaataaattatggaaaa 506  Q
    ||||||| |||||||| ||||||||||| |||||||||||||||||    
T  8740846 gtgaccactatttttctacttagttaactaaataaattatggaaaa 8740801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 360 - 585
Target Start/End: Original strand, 9810711 - 9810941
Alignment:
Q  360 aaaatttcagttaaccaaatatatggtctatgtgaacacattttt-cagttgggtgaccactatttagaagctgaaaa-tgtggtcacgcaactaaaatg 457  Q
    ||||||||||||||  ||||||||||| |  || | ||||||||| |||||| |||||||||||||||||||| |||| ||| ||||||||||| |||||    
T  9810711 aaaatttcagttaattaaatatatggtttgcgttaccacattttttcagttgcgtgaccactatttagaagctaaaaaatgtagtcacgcaactcaaatg 9810810  T
Q  458 cgcgtgaccattatttttccacttagttaaccaaataaattatggaaaaataa--tggtcacgtaact-nnnnnnntgtggtcacacagatcgtatatat 554  Q
     ||||||||  |||||||||| |||||||||||||||| ||||| ||||| ||  |||||||| ||||        |||||||||||||| | ||||| |    
T  9810811 tgcgtgacctctatttttccatttagttaaccaaataatttatgaaaaaaaaaattggtcacgcaactaaaaaaaatgtggtcacacagaccatatattt 9810910  T
Q  555 ggttaactgaaatttttcagagtggtacaaa 585  Q
    |||||||| ||| |||  |||||||||||||    
T  9810911 ggttaacttaaaatttctagagtggtacaaa 9810941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 415 - 608
Target Start/End: Original strand, 14351069 - 14351267
Alignment:
Q  415 accactatttagaagctgaaa-atgtggtcacgcaactaaaatgcgcgtgaccattatttttccacttagttaaccaaataaattatggaaaaataatgg 513  Q
    |||||||||| |||||| ||| ||||| ||||||||||||||||  | |||||| |||||||||||||||||||||||||||||| ||  |||||| |||    
T  14351069 accactattttgaagctaaaagatgtgatcacgcaactaaaatgtccatgaccactatttttccacttagttaaccaaataaattttgtcaaaatagtgg 14351168  T
Q  514 tcacgtaactnnnnnnntgtggtcacacagatcgtatatatggttaactgaaatttttcagagtggtacaa--aagt--acacgttaagggtgtctacc 608  Q
    ||||| ||||       | |||||||||| | | ||||| ||||||||| || ||||| ||||||||||||  ||||  |||| |||||||||||||||    
T  14351169 tcacgcaactagaaaaatatggtcacacaaaccatatatttggttaactaaattttttgagagtggtacaaagaagtgcacacattaagggtgtctacc 14351267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 63; E-Value: 8e-27
Query Start/End: Original strand, 316 - 518
Target Start/End: Original strand, 19596685 - 19596893
Alignment:
Q  316 gattgatagaca-cgttaatgtgtacacct-tttgtactatttttgaaaatttcagttaaccaaatatatggtctatgtgaacacattttt---cagttg 410  Q
    |||||||||||| | ||||||||||||||  ||||||| | | |  ||||| || ||| |||||||||||||||   |||| |||||||||   ||| ||    
T  19596685 gattgatagacatctttaatgtgtacacccctttgtaccactctgaaaaatctctgttgaccaaatatatggtcagcgtgaccacattttttttcagctg 19596784  T
Q  411 ggtgaccactatttagaagctgaaaa-tgtggtcacgcaactaaaatgcgcgtgaccattatttttccacttagttaaccaaataaattatggaaaaata 509  Q
     || |||| ||||||||||||||||| |||||||||||||||||||||||| |||| | |||||  ||||||||||||||||||||||| || ||| |||    
T  19596785 tgtaaccattatttagaagctgaaaaatgtggtcacgcaactaaaatgcgcatgactactatttacccacttagttaaccaaataaattctgaaaacata 19596884  T
Q  510 atggtcacg 518  Q
     ||||||||    
T  19596885 gtggtcacg 19596893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 401 - 517
Target Start/End: Complemental strand, 33249732 - 33249615
Alignment:
Q  401 ttttcagttgggtgaccactatttagaagctgaaaa-tgtggtcacgcaactaaaatgcgcgtgaccattatttttccacttagttaaccaaataaatta 499  Q
    |||||||||| |||||||||||||||||| |||||| ||||||||||||  ||||||||| ||||||| ||||||||||| ||||||| ||||||||||     
T  33249732 ttttcagttgcgtgaccactatttagaaggtgaaaaatgtggtcacgcacataaaatgcgtgtgaccactatttttccacctagttaatcaaataaattt 33249633  T
Q  500 tggaaaaataatggtcac 517  Q
    || |||| || |||||||    
T  33249632 tgaaaaagtagtggtcac 33249615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 58; E-Value: 8e-24
Query Start/End: Original strand, 774 - 907
Target Start/End: Complemental strand, 6561324 - 6561194
Alignment:
Q  774 aaataaatgtgagtagtagtaagaatttatagcaagttgagttctattcccatgggaatgtagaattctcatccttttaagtatgggaataaggaataga 873  Q
    |||||||||||||| |||||  ||| |||| |||||||||||||||||| |||||||||||   |||||||||| |||||| ||||||||||  ||||||    
T  6561324 aaataaatgtgagtggtagtgggaagttatggcaagttgagttctattctcatgggaatgttagattctcatcc-tttaagcatgggaataa-caataga 6561227  T
Q  874 agaaatcatgtgtaaataacatttcctgggaata 907  Q
    |||||| ||||| |||||||| ||||||||||||    
T  6561226 agaaattatgtgcaaataaca-ttcctgggaata 6561194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 58; E-Value: 8e-24
Query Start/End: Original strand, 359 - 498
Target Start/End: Complemental strand, 33179918 - 33179777
Alignment:
Q  359 gaaaatttcagttaaccaaatatatggtctatgtgaacacat-ttttcagttgggtgaccactatttagaagctgaaaa-tgtggtcacgcaactaaaat 456  Q
    |||||||| | ||||| ||||||||||| | ||| | || || ||||||| || |||||||||||||||||  |||||| ||||| ||| ||||||||||    
T  33179918 gaaaattttaattaactaaatatatggtatgtgttaccatatcttttcagctgcgtgaccactatttagaaagtgaaaaatgtggccacacaactaaaat 33179819  T
Q  457 gcgcgtgaccattatttttccacttagttaaccaaataaatt 498  Q
    ||| ||||||| ||||||||||||||||||| ||||||||||    
T  33179818 gcgtgtgaccactatttttccacttagttaatcaaataaatt 33179777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 360 - 507
Target Start/End: Original strand, 2433667 - 2433811
Alignment:
Q  360 aaaatttcagttaaccaaatatatggtctatgtgaacacattttt-cagttgggtgaccactatttagaagctgaaaa-tgtggtcacgcaactaaaatg 457  Q
    ||||||||| |||| ||||||||||    |||||| ||||||||| ||||||  |||||||||||||||||||||||| |||||||| | ||  ||||||    
T  2433667 aaaatttcaattaatcaaatatatg----atgtgatcacattttttcagttgtttgaccactatttagaagctgaaaaatgtggtcatgaaaa-aaaatg 2433761  T
Q  458 cgcgtgaccattatttttccacttagttaaccaaataaattatggaaaaa 507  Q
    | |||||||| ||||||| ||||| ||||||||||||||||||| |||||    
T  2433762 cacgtgaccactattttttcactttgttaaccaaataaattatgaaaaaa 2433811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 50; E-Value: 5e-19
Query Start/End: Original strand, 774 - 891
Target Start/End: Original strand, 1026165 - 1026280
Alignment:
Q  774 aaataaatgtgagtagtagtaagaatttatagcaagttgagttctattcccatgggaatgtagaattctcatccttttaagtatgggaataaggaataga 873  Q
    ||||||||| | ||| |||| ||||||||||||||||||| || |||| |||||||||||||  |||| ||||| |||||| ||| |||||| |||||||    
T  1026165 aaataaatgagtgtaatagtgagaatttatagcaagttgaattatatttccatgggaatgtaagattcccatcc-tttaagcatgagaataa-gaataga 1026262  T
Q  874 agaaatcatgtgtaaata 891  Q
    ||||||||| ||||||||    
T  1026263 agaaatcatatgtaaata 1026280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 50; E-Value: 5e-19
Query Start/End: Original strand, 774 - 907
Target Start/End: Complemental strand, 36698106 - 36697976
Alignment:
Q  774 aaataaatgtgagtagtagtaagaatttatagcaagttgagttctattcccatgggaatgtagaattctcatccttttaagtatgggaataaggaataga 873  Q
    |||||||||||||| |||||  ||| |||| |||||||||||||||||| |||||||||||   |||||||||| |||||| |||  |||||  ||||||    
T  36698106 aaataaatgtgagtggtagtgggaagttatggcaagttgagttctattctcatgggaatgttagattctcatcc-tttaagcatgtaaataa-caataga 36698009  T
Q  874 agaaatcatgtgtaaataacatttcctgggaata 907  Q
    |||||| ||||| |||||||| ||||||||||||    
T  36698008 agaaattatgtgcaaataaca-ttcctgggaata 36697976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 358 - 421
Target Start/End: Original strand, 1966778 - 1966841
Alignment:
Q  358 tgaaaatttcagttaaccaaatatatggtctatgtgaacacatttttcagttgggtgaccacta 421  Q
    ||||||||||||||||||||||||||||||| ||||| ||||||||| ||||| ||||||||||    
T  1966778 tgaaaatttcagttaaccaaatatatggtctgtgtgaccacattttttagttgcgtgaccacta 1966841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 433 - 585
Target Start/End: Original strand, 24669210 - 24669351
Alignment:
Q  433 aaaatgtggtcacgcaactaaaatgcgcgtgaccattatttttccacttagttaaccaaataaattatggaaaaataatggtcacgtaactnnnnnnntg 532  Q
    ||||| |||||||||||||||||| || ||||||| ||||||| |||||||||||||||||           ||||| |||||||| ||||       ||    
T  24669210 aaaatatggtcacgcaactaaaattcgtgtgaccactattttttcacttagttaaccaaat-----------aaatagtggtcacgcaactgaaaaaatg 24669298  T
Q  533 tggtcacacagatcgtatatatggttaactgaaatttttcagagtggtacaaa 585  Q
    |||||||||||| | ||||| || |||||| ||||||||||||||||||||||    
T  24669299 tggtcacacagaccatatatttgattaacttaaatttttcagagtggtacaaa 24669351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 45; E-Value: 5e-16
Query Start/End: Original strand, 330 - 394
Target Start/End: Complemental strand, 25007690 - 25007626
Alignment:
Q  330 ttaatgtgtacaccttttgtactatttttgaaaatttcagttaaccaaatatatggtctatgtga 394  Q
    ||||||| |||||| ||||||| ||| | ||||||||||||||||||||||||||||||||||||    
T  25007690 ttaatgtatacaccctttgtaccattctcgaaaatttcagttaaccaaatatatggtctatgtga 25007626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 330 - 404
Target Start/End: Complemental strand, 19596977 - 19596902
Alignment:
Q  330 ttaatgtgtaca-ccttttgtactatttttgaaaatttcagttaaccaaatatatggtctatgtgaacacattttt 404  Q
    |||||||||||| ||||||||||  |||| ||||||||||||||||||||||||||||   ||||| |||||||||    
T  19596977 ttaatgtgtacatccttttgtacccttttggaaaatttcagttaaccaaatatatggtacgtgtgaccacattttt 19596902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 531 - 585
Target Start/End: Original strand, 17633460 - 17633514
Alignment:
Q  531 tgtggtcacacagatcgtatatatggttaactgaaatttttcagagtggtacaaa 585  Q
    |||||||||||||| | ||||| |||||||||||||||||||| |||||||||||    
T  17633460 tgtggtcacacagaccatatatttggttaactgaaatttttcaaagtggtacaaa 17633514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 360 - 425
Target Start/End: Complemental strand, 24669336 - 24669270
Alignment:
Q  360 aaaatttcagttaaccaaatatatggtctatgtgaacaca-tttttcagttgggtgaccactattta 425  Q
    ||||||| |||||| |||||||||||||| ||||| |||| ||||||||||| ||||||||||||||    
T  24669336 aaaatttaagttaatcaaatatatggtctgtgtgaccacattttttcagttgcgtgaccactattta 24669270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 360 - 424
Target Start/End: Complemental strand, 42908730 - 42908666
Alignment:
Q  360 aaaatttcagttaaccaaatatatggtctatgtgaacacatttttcagttgggtgaccactattt 424  Q
    ||||||| ||||||||||||||||||| | ||||| ||||||||| ||||| || ||||||||||    
T  42908730 aaaatttaagttaaccaaatatatggtatgtgtgaccacattttttagttgagtcaccactattt 42908666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 400 - 436
Target Start/End: Complemental strand, 1967015 - 1966979
Alignment:
Q  400 tttttcagttgggtgaccactatttagaagctgaaaa 436  Q
    ||||||||||| |||||||||||||||||||||||||    
T  1967015 tttttcagttgcgtgaccactatttagaagctgaaaa 1966979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 360 - 404
Target Start/End: Original strand, 17633288 - 17633332
Alignment:
Q  360 aaaatttcagttaaccaaatatatggtctatgtgaacacattttt 404  Q
    ||||||| ||||||||||||||||||||| ||||| |||||||||    
T  17633288 aaaattttagttaaccaaatatatggtctgtgtgaccacattttt 17633332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 330 - 404
Target Start/End: Complemental strand, 9810957 - 9810882
Alignment:
Q  330 ttaatgtgtacacct-tttgtactatttttgaaaatttcagttaaccaaatatatggtctatgtgaacacattttt 404  Q
    |||||||||| |||| ||||||| | | | |||| ||| ||||||||||||||||||||| ||||| |||||||||    
T  9810957 ttaatgtgtaaacctatttgtaccactctagaaattttaagttaaccaaatatatggtctgtgtgaccacattttt 9810882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 400 - 454
Target Start/End: Original strand, 20874825 - 20874880
Alignment:
Q  400 tttttcagttgggtgaccactatttagaagctg-aaaatgtggtcacgcaactaaa 454  Q
    ||||||||||| |||| |||| ||||||||||| |||||||||| |||||||||||    
T  20874825 tttttcagttgcgtgatcactttttagaagctgaaaaatgtggtaacgcaactaaa 20874880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 900 - 991
Target Start/End: Complemental strand, 6561184 - 6561085
Alignment:
Q  900 tgggaataaattttcaaaacttgaa--caacatgg--atgttgcatttcc-atctcacatttc--ggaatcatattataaaccttg-aacaaacacaccc 991  Q
    |||||| ||||||||||||||||||   |||||||  ||||||||||||| || ||||||| |  |||||||||||| |||||||| |||||||||||||    
T  6561184 tgggaacaaattttcaaaacttgaaacaaacatgggaatgttgcatttccaatgtcacattcccgggaatcatattacaaaccttgaaacaaacacaccc 6561085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 628 - 669
Target Start/End: Complemental strand, 6561458 - 6561417
Alignment:
Q  628 gtttgtttcgaggtaagaaattacattccttggaatgatatt 669  Q
    ||||||||| ||||||||||||| |||||||| |||||||||    
T  6561458 gtttgtttcaaggtaagaaattaaattccttgaaatgatatt 6561417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 368 - 424
Target Start/End: Complemental strand, 14351217 - 14351160
Alignment:
Q  368 agttaaccaaatatatggtctatgtgaacacatttttc-agttgggtgaccactattt 424  Q
    ||||||||||||||||||| | ||||| || ||||||| ||||| |||||||||||||    
T  14351217 agttaaccaaatatatggtttgtgtgaccatatttttctagttgcgtgaccactattt 14351160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 628 - 669
Target Start/End: Complemental strand, 36698245 - 36698204
Alignment:
Q  628 gtttgtttcgaggtaagaaattacattccttggaatgatatt 669  Q
    ||||||||| ||||||||||||| |||||||| |||||||||    
T  36698245 gtttgtttcaaggtaagaaattaaattccttgaaatgatatt 36698204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 93; Significance: 1e-44; HSPs: 28)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 93; E-Value: 1e-44
Query Start/End: Original strand, 400 - 585
Target Start/End: Complemental strand, 29677202 - 29677017
Alignment:
Q  400 tttttcagttgggtgaccactatttagaagctgaaaa-tgtggtcacgcaactaaaatgcgcgtgaccattatttttccacttagttaaccaaataaatt 498  Q
    ||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||    
T  29677202 tttttcagttgagtgaccactatttagaagctgaaaaatgtggtcacgcaactaaaatgtgcgtgaccactatttttccacttagttaaccaaataaatt 29677103  T
Q  499 atggaaaaataatggtcacgtaactnnnnnnntgtggtcacacagatcgtatatatggttaactgaaatttttcagagtggtacaaa 585  Q
     || ||||||| |||||| | ||||       |||||||||||||  | ||||| ||||||||| |||||||||| |||| ||||||    
T  29677102 ctgaaaaaatagtggtcatgcaact-aaaaaatgtggtcacacaggccatatatttggttaactaaaatttttcaaagtgctacaaa 29677017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 92; E-Value: 4e-44
Query Start/End: Original strand, 360 - 585
Target Start/End: Original strand, 34490140 - 34490366
Alignment:
Q  360 aaaatttcagttaaccaaatatatggtctatgtgaacacattttt-cagttgggtgaccactatttagaagctgaaaa-tgtggtcacgcaactaaaatg 457  Q
    ||||||||||||||| ||||||||||||| ||||| ||||||||| ||||||  ||||||||||||||||||| |||| |||||||| |||| |||||||    
T  34490140 aaaatttcagttaactaaatatatggtctgtgtga-cacattttttcagttgtatgaccactatttagaagctaaaaaatgtggtcatgcaa-taaaatg 34490237  T
Q  458 cgcgtgaccattatttttccacttagttaaccaaataaattatggaaaaa-taatggtcacgtaactnnnnnnntgtggtcacacagatcgtatatatgg 556  Q
    ||| |||||| |||||||| | ||||||||||||||||||| || ||||| || |||||||| ||||       |||||||||||||| | ||||| | |    
T  34490238 cgcatgaccactatttttctagttagttaaccaaataaattctgaaaaaactagtggtcacgcaactaaaaaaatgtggtcacacagaccatatattttg 34490337  T
Q  557 ttaactgaaatttttcagagtggtacaaa 585  Q
    | |||||||||||||||||||||||||||    
T  34490338 taaactgaaatttttcagagtggtacaaa 34490366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 86; E-Value: 2e-40
Query Start/End: Original strand, 368 - 584
Target Start/End: Original strand, 25238436 - 25238653
Alignment:
Q  368 agttaaccaaatatatggtctatgtgaacacattttt-cagttgggtgaccactatttagaagctgaaaa-tgtggtcacgcaactaaaatgcgcgtgac 465  Q
    ||||||| ||||||||||||||| ||| || |||||| |||||| |||||||||||||||||||| |||| |||||||||| || ||||||| |||| ||    
T  25238436 agttaactaaatatatggtctatatgatcaaattttttcagttgcgtgaccactatttagaagctaaaaaatgtggtcacgtaa-taaaatgtgcgtaac 25238534  T
Q  466 cattatttttccacttagttaaccaaataaattatggaaaaataatggtcacgtaactnnnnnnntgtggtcacacagatcgtatatatggttaactgaa 565  Q
    || |||||||||||||||||||||||||||||| || |||| || | ||||| |||||       |||||||||| | | | ||||| || |||||||||    
T  25238535 cactatttttccacttagttaaccaaataaattctgaaaaactagtagtcacataactaaaaaaatgtggtcacagaaaccatatatttgattaactgaa 25238634  T
Q  566 atttttcagagtggtacaa 584  Q
    |||||||||||||||||||    
T  25238635 atttttcagagtggtacaa 25238653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 86; E-Value: 2e-40
Query Start/End: Original strand, 359 - 585
Target Start/End: Original strand, 34364183 - 34364408
Alignment:
Q  359 gaaaatttcagttaaccaaatatatggtctatgtgaacacatttttcagttgggtgaccactatttagaagctgaaa-atgtggtcacgcaactaaaatg 457  Q
    |||||||| ||||||| ||||||||||||| ||||| || |||||||||||| ||| ||| |||||||||||||||| |||||||||| |||||||||||    
T  34364183 gaaaatttaagttaactaaatatatggtctgtgtgaccatatttttcagttgcgtggcca-tatttagaagctgaaacatgtggtcacacaactaaaatg 34364281  T
Q  458 cgcgtgaccattatttttccacttagttaaccaaataaattatggaaaaataatggtcacgtaactnnnnnnntgtggtcacacagatcgtatatatggt 557  Q
      ||||||||  |||||| |||||||||||||||| ||||| ||||||||||||||||||  ||||       |||| | ||||||| | ||||| || |    
T  34364282 aacgtgaccacaattttttcacttagttaaccaaaaaaattctggaaaaataatggtcacacaact-aaagaatgtgattacacagagcatatatttgat 34364380  T
Q  558 taactgaaatttttcagagtggtacaaa 585  Q
    ||||| |||||||||||||| |||||||    
T  34364381 taacttaaatttttcagagtagtacaaa 34364408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 78; E-Value: 9e-36
Query Start/End: Original strand, 359 - 585
Target Start/End: Original strand, 38951854 - 38952085
Alignment:
Q  359 gaaaatttcagttaaccaaatatatggtctatgtgaacacattttt--cagttgggtgaccactatttagaagctgaaaa---tgtggtcacgcaactaa 453  Q
    |||||||| ||||||||||||||||||||||||  | |||||||||  ||| || ||||||||||||||||| |||||||   | | |||||||||||||    
T  38951854 gaaaatttaagttaaccaaatatatggtctatgaaaccacatttttttcagctgcgtgaccactatttagaaactgaaaaaaatatagtcacgcaactaa 38951953  T
Q  454 aatgcgcgtgaccattatttttccacttagttaaccaaataaattatggaaaaataatggtcacgtaactnnnnnnntgtggtcacacagatcgtatata 553  Q
    ||||||  |||||| |||||||| ||||||||||||||||||||| |||| ||||| |||||| | ||||       | |||||||| | | | || ||     
T  38951954 aatgcgtctgaccactatttttctacttagttaaccaaataaattttggagaaatagtggtcaagcaactaaaaaaatatggtcacatataccatacatt 38952053  T
Q  554 tggttaactgaaatttttcagagtggtacaaa 585  Q
    | ||||||||||||||||||||||| ||||||    
T  38952054 ttgttaactgaaatttttcagagtgatacaaa 38952085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 316 - 585
Target Start/End: Original strand, 5831438 - 5831710
Alignment:
Q  316 gattgatagacacgttaatgtgtacacc-ttttgtactatttttgaaaatttcagttaaccaaatatatggtctatgtgaacacatttt-tcagttgggt 413  Q
    ||||| ||||||| |||||| ||||||| |||||||  ||| |  ||||||| ||||||| ||| ||||||| | ||||| || ||||| |  ||||  |    
T  5831438 gattggtagacactttaatgagtacacccttttgtaacattctgaaaaattttagttaactaaagatatggtatgtgtgatcatattttgtttgttgcat 5831537  T
Q  414 gaccactatttagaagctgaaaa-tgtggtcacgcaactaaaatgcgcgtgaccattatttttccacttagttaaccaaataaattatggaaaaataatg 512  Q
    |||||||||||||||| | |||| | ||||| || ||||||||||||  | ||||  ||||||||||||||||||||||||||||| ||||||| || ||    
T  5831538 gaccactatttagaagttaaaaaatatggtcccgtaactaaaatgcgtattaccacaatttttccacttagttaaccaaataaattctggaaaattagtg 5831637  T
Q  513 gtcacgtaactnnnnnnntgtggtcacacagatcgtatatatggttaactgaaatttttcagagtggtacaaa 585  Q
    |||||| ||||       | |||||||||||| | ||||| ||||||| ||||||||||||||||| ||||||    
T  5831638 gtcacgcaactaaaaaaatatggtcacacagaccatatatttggttaattgaaatttttcagagtgatacaaa 5831710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 65; E-Value: 5e-28
Query Start/End: Original strand, 400 - 573
Target Start/End: Complemental strand, 29167926 - 29167754
Alignment:
Q  400 tttttcagttgggtgaccactatttagaagctgaaaa-tgtggtcacgcaactaaaatgcgcgtgaccattatttttccacttagttaaccaaataaatt 498  Q
    ||||||||||| |||||||||||||||||||| |||| | ||||||||||| |||||||||| |||||| ||||||||||||||||||||||||||||||    
T  29167926 tttttcagttgcgtgaccactatttagaagctaaaaaatatggtcacgcaa-taaaatgcgcatgaccactatttttccacttagttaaccaaataaatt 29167828  T
Q  499 atggaaaaataatggtcacgtaactnnnnnnntgtggtcacacagatcgtatatatggttaactgaaatttttca 573  Q
      | |||| || |||||| | ||||       |||||||||||| | | ||||| | ||||||||||||||||||    
T  29167827 ccgaaaaactagtggtcaggcaact-aaaaaatgtggtcacacaaaccatatatttagttaactgaaatttttca 29167754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 60; E-Value: 5e-25
Query Start/End: Original strand, 400 - 583
Target Start/End: Original strand, 42604210 - 42604394
Alignment:
Q  400 tttttcagttgggtgaccactatttagaagctgaaaa-tgtggtcacgcaactaaaatgcgcgtgaccattatttttccacttagttaaccaaataaatt 498  Q
    |||||||||||  | ||||||||||||||||| |||| | ||||||  ||||||||||||||||||||| |||||||||||||||||||| |||||||||    
T  42604210 tttttcagttgcatcaccactatttagaagcttaaaagtatggtcatacaactaaaatgcgcgtgaccactatttttccacttagttaacgaaataaatt 42604309  T
Q  499 atggaaaaataatggtcacgtaactnnnnnnntgtggtcacacagatcgtatatatggttaactgaaatttttcagagtggtaca 583  Q
     || ||||||| || ||||  ||||       |||||||||||| | | ||||| || |||||  ||| |||||| |||||||||    
T  42604310 ctgaaaaaatagtgatcacacaactaaaacaatgtggtcacacaaaccatatatttgattaaccaaaaattttcaaagtggtaca 42604394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 421 - 496
Target Start/End: Original strand, 2996025 - 2996101
Alignment:
Q  421 atttagaagctgaaaa-tgtggtcacgcaactaaaatgcgcgtgaccattatttttccacttagttaaccaaataaa 496  Q
    |||||||||||||||| ||||||||||||| ||||||||||||| ||  ||||||||| ||||||||||||||||||    
T  2996025 atttagaagctgaaaaatgtggtcacgcaaataaaatgcgcgtggccgctatttttccgcttagttaaccaaataaa 2996101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 771 - 896
Target Start/End: Complemental strand, 8262604 - 8262478
Alignment:
Q  771 tggaaataaatgtgagtagtagtaagaatttatagcaagttgagttctattcccatgggaatgtagaattctcatccttt--taagtatgggaataagga 868  Q
    ||||||||||||||||| ||||| | |||||||||||||||||||| ||||  |||||||||||   |||||||||||||  |||||||  | ||||  |    
T  8262604 tggaaataaatgtgagtggtagtgaaaatttatagcaagttgagttttatttacatgggaatgttagattctcatcctttaataagtatatggataa-ca 8262506  T
Q  869 atagaagaaatcatgtgtaaataacatt 896  Q
    ||||||||||||| ||||| ||||||||    
T  8262505 atagaagaaatcacgtgtagataacatt 8262478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 364 - 497
Target Start/End: Original strand, 9468064 - 9468199
Alignment:
Q  364 tttcagttaaccaaatatatggtctatgtgaacaca-tttttcagttgggtgaccactatttagaagctg-aaaatgtggtcacgcaactaaaatgcgcg 461  Q
    ||||||||||||||||||||||| | ||||| || | |||||||||||  |||||| |||||| |||||| |||||||| |||| |||||||||||   |    
T  9468064 tttcagttaaccaaatatatggtatgtgtgaccatattttttcagttgtctgacca-tatttaaaagctgtaaaatgtgatcacacaactaaaatgtatg 9468162  T
Q  462 tgaccattattttt-ccacttagttaaccaaataaat 497  Q
    |||| | ||||||| ||||||||||||||||||||||    
T  9468163 tgactactatttttgccacttagttaaccaaataaat 9468199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 360 - 496
Target Start/End: Complemental strand, 517570 - 517433
Alignment:
Q  360 aaaatttcagttaaccaaatatatggtctatgtgaacacatttttcagttgggtgaccactatttagaagctgaaaa-tgtggtcacgcaactaaaatgc 458  Q
    ||||||| ||||||||||||||||| | | ||  | ||||||||||| ||| || ||||||||||||||| | |||| | || ||||||||||||||||     
T  517570 aaaatttaagttaaccaaatatatgatatgtgcaaccacatttttcaattgcgtaaccactatttagaagttaaaaaatatgatcacgcaactaaaatga 517471  T
Q  459 gcgtgaccattatttttccacttagttaaccaaataaa 496  Q
     | |||| | |||||||  |||||||||||||||||||    
T  517470 acatgactactattttttaacttagttaaccaaataaa 517433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 459 - 585
Target Start/End: Original strand, 2569960 - 2570086
Alignment:
Q  459 gcgtgaccattatttttccacttagttaaccaaataaattatggaaaaataatggtcacgtaactnnnnnnntgtggtcacacagatcgtatatatggtt 558  Q
    ||||||||| |||||||||||||||||||||||||||||| | |||||||| |||||||| ||||       | |||| ||||| | | ||||  |||||    
T  2569960 gcgtgaccactatttttccacttagttaaccaaataaattctagaaaaatagtggtcacgcaactcaaaaaatatggtaacacaaaccatatacttggtt 2570059  T
Q  559 aactgaaatttttcagagtggtacaaa 585  Q
    |||| ||||||| ||||| ||||||||    
T  2570060 aacttaaattttccagagcggtacaaa 2570086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 344 - 460
Target Start/End: Complemental strand, 9929951 - 9929834
Alignment:
Q  344 ttttgtactatttttgaaaatttcagttaaccaaatatatggtctatgtgaacaca-tttttcagttgggtgaccactattt----agaagctgaaaatg 438  Q
    |||||||| |||||  ||||||||| ||||| ||||||||||||| ||||| |||| ||||||| ||| |||||||||||||    ||||    || |||    
T  9929951 ttttgtaccattttgaaaaatttcaattaactaaatatatggtctgtgtgaccacattttttcatttgcgtgaccactattttttcagaa----aatatg 9929856  T
Q  439 tggtcacgcaactaaaatgcgc 460  Q
    ||||||||||||||||||||||    
T  9929855 tggtcacgcaactaaaatgcgc 9929834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 466 - 585
Target Start/End: Complemental strand, 9929781 - 9929662
Alignment:
Q  466 cattatttttccacttagttaaccaaataaattatggaaaaataatggtcacgtaactnnnnnnntgtggtcacacagatcgtatatatggttaactgaa 565  Q
    ||||||||||||| ||||||||||||||||||| || |||||||  |||| || ||||       |||||||| ||| | | ||||| ||||||||| ||    
T  9929781 cattatttttccatttagttaaccaaataaattttgaaaaaatatcggtcgcgcaactaaaataatgtggtcatacaaaccatatatttggttaacttaa 9929682  T
Q  566 atttttcagagtggtacaaa 585  Q
    |||||  |||||||||||||    
T  9929681 attttcaagagtggtacaaa 9929662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 360 - 424
Target Start/End: Original strand, 5855057 - 5855122
Alignment:
Q  360 aaaatttcagttaaccaaatatatggtctatgtgaacacat-ttttcagttgggtgaccactattt 424  Q
    |||||||||| |||||||||||||||||| ||||| ||||| |||||||||| |||||||| ||||    
T  5855057 aaaatttcagctaaccaaatatatggtctgtgtgaccacatattttcagttgtgtgaccacaattt 5855122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 638 - 896
Target Start/End: Original strand, 18833542 - 18833801
Alignment:
Q  638 aggtaagaaattacattccttggaatgatattctcaggaataatatttataggaata---ttcctacccacgtgttttgtaaaaat-ttagatttcttgg 733  Q
    ||||||||||||||||| ||| |||||||||   |||||||  ||||| ||||||||   |||||||||| |||||| |||||||  |||||| | |||     
T  18833542 aggtaagaaattacatttcttagaatgatatctccaggaatg-tatttttaggaataacattcctacccatgtgtttggtaaaaaaattagatattttga 18833640  T
Q  734 gaacgttttagaaatgatttaattnnnnnnnnnnnnntggaaataaatgtgagtagtagtaagaatttatagcaagttgagttctattcccatgggaatg 833  Q
    ||| ||||||||||| ||||||||             || ||||||||| ||||  | ||   || |||| ||||||||| ||||||||||||| |||||    
T  18833641 gaatgttttagaaattatttaattcaaaaaacaaaaatgaaaataaatgcgagtgttggtcgaaagttatggcaagttgacttctattcccatgagaatg 18833740  T
Q  834 tagaattctcatccttttaagtatgggaataaggaatagaagaaatcatgtgtaaataacatt 896  Q
    |   |||| |||| ||| ||| ||| ||||||  |||||||||||||||||||||||||||||    
T  18833741 ttagattcacatcattt-aagcatgagaataac-aatagaagaaatcatgtgtaaataacatt 18833801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 531 - 587
Target Start/End: Original strand, 5855228 - 5855284
Alignment:
Q  531 tgtggtcacacagatcgtatatatggttaactgaaatttttcagagtggtacaaaag 587  Q
    |||||||||||| | | ||||| ||||||||| ||||||||||||||||||||||||    
T  5855228 tgtggtcacacataccatatatttggttaacttaaatttttcagagtggtacaaaag 5855284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 360 - 424
Target Start/End: Original strand, 29677032 - 29677096
Alignment:
Q  360 aaaatttcagttaaccaaatatatggtctatgtgaacacatttttcagttgggtgaccactattt 424  Q
    ||||||| |||||||||||||||||| || ||||| ||||||||| |||||  ||||||||||||    
T  29677032 aaaattttagttaaccaaatatatggcctgtgtgaccacattttttagttgcatgaccactattt 29677096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 330 - 404
Target Start/End: Original strand, 13350903 - 13350978
Alignment:
Q  330 ttaatgtgtacacc-ttttgtactatttttgaaaatttcagttaaccaaatatatggtctatgtgaacacattttt 404  Q
    |||||||||||||| |||||||| | | | |||||||||||||||||||||||||||| | ||||| ||| |||||    
T  13350903 ttaatgtgtacacccttttgtaccactctcgaaaatttcagttaaccaaatatatggtatgtgtgatcacgttttt 13350978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 361 - 422
Target Start/End: Complemental strand, 38244863 - 38244801
Alignment:
Q  361 aaatttcagttaaccaaatatatggtctatgtgaacaca-tttttcagttgggtgaccactat 422  Q
    |||||| ||||| ||||||||||||||| ||||| |||| ||||||||||| |||||||||||    
T  38244863 aaatttaagttagccaaatatatggtctgtgtgaccacattttttcagttgcgtgaccactat 38244801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 360 - 421
Target Start/End: Original strand, 29167757 - 29167818
Alignment:
Q  360 aaaatttcagttaaccaaatatatggtctatgtgaacacatttttcagttgggtgaccacta 421  Q
    ||||||||||||||| ||||||||||| | ||||| ||||||||| |||||  |||||||||    
T  29167757 aaaatttcagttaactaaatatatggtttgtgtgaccacattttttagttgcctgaccacta 29167818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 771 - 850
Target Start/End: Original strand, 24888335 - 24888414
Alignment:
Q  771 tggaaataaatgtgagtagtagtaagaatttatagcaagttgagttctattcccatgggaatgtagaattctcatccttt 850  Q
    ||||||||| ||| ||| ||||  ||||||||||||||||||| || |||| |||||| |||||   |||||||||||||    
T  24888335 tggaaataagtgttagtggtagcgagaatttatagcaagttgaattttatttccatggaaatgttagattctcatccttt 24888414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 360 - 421
Target Start/End: Complemental strand, 5831695 - 5831633
Alignment:
Q  360 aaaatttcagttaaccaaatatatggtctatgtgaacaca-tttttcagttgggtgaccacta 421  Q
    ||||||||| ||||||||||||||||||| ||||| || | ||||| ||||| ||||||||||    
T  5831695 aaaatttcaattaaccaaatatatggtctgtgtgaccatatttttttagttgcgtgaccacta 5831633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 360 - 425
Target Start/End: Complemental strand, 5855267 - 5855201
Alignment:
Q  360 aaaatttcagttaaccaaatatatggtctatgtgaacacattt-ttcagttgggtgaccactattta 425  Q
    ||||||| ||||||||||||||||||| | ||||| |||||||  | ||||| ||||||||||||||    
T  5855267 aaaatttaagttaaccaaatatatggtatgtgtgaccacatttagttagttgcgtgaccactattta 5855201  T

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Target: chr1; HSP #26
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 531 - 585
Target Start/End: Original strand, 13351009 - 13351063
Alignment:
Q  531 tgtggtcacacagatcgtatatatggttaactgaaatttttcagagtggtacaaa 585  Q
    |||||||||| ||| | ||||| ||||||| | ||||||||||||||||||||||    
T  13351009 tgtggtcacaaagaccatatatttggttaagttaaatttttcagagtggtacaaa 13351063  T

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Target: chr1; HSP #27
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 360 - 421
Target Start/End: Complemental strand, 34490351 - 34490289
Alignment:
Q  360 aaaatttcagttaaccaaatatatggtctatgtgaacaca-tttttcagttgggtgaccacta 421  Q
    |||||||||||| || ||||||||||||| ||||| |||| ||||| ||||| ||||||||||    
T  34490351 aaaatttcagtttacaaaatatatggtctgtgtgaccacatttttttagttgcgtgaccacta 34490289  T

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Target: chr1; HSP #28
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 323 - 387
Target Start/End: Complemental strand, 28499727 - 28499662
Alignment:
Q  323 agacacgttaatgtgtacacc-ttttgtactatttttgaaaatttcagttaaccaaatatatggtc 387  Q
    |||||| |||| ||||||| | |||||||| ||| |  ||||||||||||||||||||||||||||    
T  28499727 agacactttaacgtgtacatcattttgtaccattctaaaaaatttcagttaaccaaatatatggtc 28499662  T

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Target: scaffold0251 (Bit Score: 74; Significance: 2e-33; HSPs: 1)
Name: scaffold0251
Description:

Target: scaffold0251; HSP #1
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 359 - 514
Target Start/End: Complemental strand, 10774 - 10617
Alignment:
Q  359 gaaaatttcagttaaccaaatatatggtctatgtgaacaca-tttttcagttgggtgaccactatttagaagct-gaaaatgtggtcacgcaactaaaat 456  Q
    |||||||||| |||||||||||||||||||| ||||  | | ||||| |||||  ||||||||||||| ||  |  ||||||||||||||||||||||||    
T  10774 gaaaatttcaattaaccaaatatatggtctaggtgactatattttttaagttgcatgaccactatttaaaaaataaaaaatgtggtcacgcaactaaaat 10675  T
Q  457 gcgcgtgaccattatttttccacttagttaaccaaataaattatggaaaaataatggt 514  Q
     | ||||||||||||||||||||||||||||||||||||||| |  ||||||||||||    
T  10674 acccgtgaccattatttttccacttagttaaccaaataaattctcaaaaaataatggt 10617  T

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Target: scaffold0123 (Bit Score: 63; Significance: 8e-27; HSPs: 1)
Name: scaffold0123
Description:

Target: scaffold0123; HSP #1
Raw Score: 63; E-Value: 8e-27
Query Start/End: Original strand, 360 - 517
Target Start/End: Complemental strand, 24180 - 24020
Alignment:
Q  360 aaaatttcagttaaccaaatatatg--gtctatgtgaacacattttt-cagttgggtgaccactatttagaagctgaaaa-tgtggtcacgcaactaaaa 455  Q
    ||||||||||| |||| ||||||||  ||||||||||  |||||||| ||||||  ||||||||||||||||||| |||| |||||| |||||  |||||    
T  24180 aaaatttcagtgaaccgaatatatgtcgtctatgtgactacattttttcagttgcatgaccactatttagaagctaaaaaatgtggttacgcat-taaaa 24082  T
Q  456 tgcgcgtgaccattatttttccacttagttaaccaaataaattatggaaaaataatggtcac 517  Q
    |||||||||||| |||||||||||||| || |||||||||||| || |||| || |||||||    
T  24081 tgcgcgtgaccactatttttccacttattttaccaaataaattctgaaaaactagtggtcac 24020  T

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Target: scaffold0044 (Bit Score: 55; Significance: 5e-22; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 55; E-Value: 5e-22
Query Start/End: Original strand, 693 - 898
Target Start/End: Original strand, 58339 - 58542
Alignment:
Q  693 tattcctacccacgtgttttgtaaaaatttagatttcttgggaacgttttagaaatgatttaattnnnnnnnnnnnnntggaaataaatgtgagtagtag 792  Q
    |||| ||||||| |||||| |||||||||| ||||| ||||||| ||||||||||| ||||||||             || ||||||||| | | |||||    
T  58339 tatttctacccatgtgtttggtaaaaatttggattttttgggaatgttttagaaattatttaattaaaaaaattaaaatgaaaataaatggggggagtag 58438  T
Q  793 taagaatttatagcaagttgagttctattcccatgggaatgtagaattctcatccttttaagtatgggaataaggaatagaagaaatcatgtgtaaataa 892  Q
    | |||||||||||||| ||||||| |||||||||| || |||   |||||||||| |||||| |||  |||||  |||||||||||||| ||||||||||    
T  58439 tgagaatttatagcaatttgagttttattcccatgagattgttagattctcatcc-tttaagcatgaaaataa-caatagaagaaatcacgtgtaaataa 58536  T
Q  893 catttc 898  Q
    ||||||    
T  58537 catttc 58542  T

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Target: scaffold0126 (Bit Score: 52; Significance: 3e-20; HSPs: 1)
Name: scaffold0126
Description:

Target: scaffold0126; HSP #1
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 330 - 447
Target Start/End: Complemental strand, 21667 - 21549
Alignment:
Q  330 ttaatgtgtacaccttttgtactatttttgaaaatttcagttaaccaaatatatggtctatgtgaacaca-tttttcagttgggtgaccactatttagaa 428  Q
    ||||||||||||| ||| || | | ||| |||||| |||||||||| |||||||||||| ||||| |||| ||||||||||| ||||||||||| |||||    
T  21667 ttaatgtgtacacgttt-gtgccactttagaaaatctcagttaaccgaatatatggtctgtgtgaccacattttttcagttgcgtgaccactatatagaa 21569  T
Q  429 gctg-aaaatgtggtcacgc 447  Q
    |||| |||||||||||||||    
T  21568 gctgaaaaatgtggtcacgc 21549  T

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Target: scaffold0043 (Bit Score: 50; Significance: 5e-19; HSPs: 1)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 50; E-Value: 5e-19
Query Start/End: Original strand, 421 - 497
Target Start/End: Original strand, 87035 - 87112
Alignment:
Q  421 atttagaagctgaaaa-tgtggtcacgcaactaaaatgcgcgtgaccattatttttccacttagttaaccaaataaat 497  Q
    |||||||| ||||||| |||||||||||||||||||| | |||||||| |||||||| ||||||||||||||||||||    
T  87035 atttagaaactgaaaaatgtggtcacgcaactaaaatacacgtgaccactatttttctacttagttaaccaaataaat 87112  T

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Target: scaffold0024 (Bit Score: 50; Significance: 5e-19; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 50; E-Value: 5e-19
Query Start/End: Original strand, 421 - 497
Target Start/End: Original strand, 112158 - 112235
Alignment:
Q  421 atttagaagctgaaaat-gtggtcacgcaactaaaatgcgcgtgaccattatttttccacttagttaaccaaataaat 497  Q
    ||||||||||||||||  |||||||||||| |||||||| |||||||| |||||||||||||||||||| ||||||||    
T  112158 atttagaagctgaaaaacgtggtcacgcaattaaaatgcacgtgaccactatttttccacttagttaactaaataaat 112235  T

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Target: scaffold0216 (Bit Score: 49; Significance: 2e-18; HSPs: 1)
Name: scaffold0216
Description:

Target: scaffold0216; HSP #1
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 774 - 894
Target Start/End: Original strand, 28909 - 29027
Alignment:
Q  774 aaataaatgtgagtagtagtaagaatttatagcaagttgagttctattcccatgggaatgtagaattctcatccttttaagtatgggaataaggaataga 873  Q
    |||||||||||||| |||||  ||| |||| |||||||||||||||||| |||||||||||   ||| |||||| |||||| ||||||||||  ||||||    
T  28909 aaataaatgtgagtggtagtgggaagttatggcaagttgagttctattctcatgggaatgttagattatcatcc-tttaagcatgggaataa-caataga 29006  T
Q  874 agaaatcatgtgtaaataaca 894  Q
    |||||| ||||| ||||||||    
T  29007 agaaattatgtgcaaataaca 29027  T

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Target: scaffold0291 (Bit Score: 42; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0291
Description:

Target: scaffold0291; HSP #1
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 421 - 497
Target Start/End: Original strand, 5870 - 5947
Alignment:
Q  421 atttagaagctgaaaa-tgtggtcacgcaactaaaatgcgcgtgaccattatttttccacttagttaaccaaataaat 497  Q
    ||||| |||||||||| ||||||  |||||||||||| |||||||||| ||||||| |||||| ||||||||||||||    
T  5870 atttaaaagctgaaaagtgtggtgtcgcaactaaaatacgcgtgaccactatttttgcacttaattaaccaaataaat 5947  T

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Target: scaffold0284 (Bit Score: 41; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0284
Description:

Target: scaffold0284; HSP #1
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 774 - 850
Target Start/End: Original strand, 6180 - 6256
Alignment:
Q  774 aaataaatgtgagtagtagtaagaatttatagcaagttgagttctattcccatgggaatgtagaattctcatccttt 850  Q
    |||||||||||||| |||||  ||| |||| |||||||||||||||||| |||||||||||   |||||||||||||    
T  6180 aaataaatgtgagtggtagtgggaagttatggcaagttgagttctattctcatgggaatgttatattctcatccttt 6256  T

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Target: scaffold0578 (Bit Score: 37; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0578
Description:

Target: scaffold0578; HSP #1
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 797 - 896
Target Start/End: Complemental strand, 2744 - 2647
Alignment:
Q  797 aatttatagcaagttgagttctattcccatgggaatg-tagaattctcatccttttaagtatgggaataaggaatagaagaaatcatgtgtaaataacat 895  Q
    ||||||||||||||||| || ||||| |||||||||| |||| ||| ||||| |||||| ||| ||||||  ||||||| ||||||||||||||||||||    
T  2744 aatttatagcaagttgatttttattctcatgggaatgttagatttc-catcc-tttaagcatgagaataa-caatagaataaatcatgtgtaaataacat 2648  T

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Target: scaffold0213 (Bit Score: 36; Significance: 0.0000000001; HSPs: 2)
Name: scaffold0213
Description:

Target: scaffold0213; HSP #1
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 361 - 423
Target Start/End: Complemental strand, 24995 - 24932
Alignment:
Q  361 aaatttcagttaaccaaatatatggtctatgtgaacacat-ttttcagttgggtgaccactatt 423  Q
    |||||||||||| |||||||||| |||| ||||| ||||| |||||||||| ||||||||||||    
T  24995 aaatttcagttagccaaatatatagtctgtgtgaccacatgttttcagttgtgtgaccactatt 24932  T

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Target: scaffold0213; HSP #2
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 360 - 403
Target Start/End: Complemental strand, 24797 - 24754
Alignment:
Q  360 aaaatttcagttaaccaaatatatggtctatgtgaacacatttt 403  Q
    |||| |||||||| ||||||||||||||||||||| ||||||||    
T  24797 aaaaattcagttagccaaatatatggtctatgtgaccacatttt 24754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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