View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5946-Insertion-3 (Length: 902)
Name: NF5946-Insertion-3
Description: NF5946
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5946-Insertion-3 |
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Alignment Details
Target: chr3 (Bit Score: 358; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 401 - 853
Target Start/End: Original strand, 9177871 - 9178320
Alignment:
| Q |
401 |
aatataaagagcagaagagaaagttcacatattttaaatatagagagaaatgaggtatttgaagttcgaactctaccaattaagataaactcatcgggac |
500 |
Q |
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| T |
9177871 |
aatataaagagcagtaaagaaagctcacatattttaaatatagaaa--aatgaaatatttgaagttctaactctaccaattaaattaaattcatttggac |
9177968 |
T |
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| Q |
501 |
aaaagagaagccatcatatcagattgttgcaacaactatgagacaaaatatttaaaaatacaaggataattaaaggcttcaaggatttaattttgttgtt |
600 |
Q |
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| T |
9177969 |
aaaagagaagccatcatatgaggttgttgcaacaactatgagacaaaatatttaaaaatacaaggataattaaaggcttcaaggatttaattttgttgtt |
9178068 |
T |
|
| Q |
601 |
taagaaaataacatagattactagcaaacaaataaatcattagctacaactctgccacgtattcacatgccaacgtggtaggtcaaaccttcacattcgc |
700 |
Q |
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| T |
9178069 |
taagaaaataacatagat-actagcaaacaaataaatcattagctacaactctgccacgtattcacatgccaacgtggtaggtcaaaccttcacattcgc |
9178167 |
T |
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| Q |
701 |
attacctttcttgattctacgatgtcggtctttctttagaaagtaataaagtgacatcatgtcggccagtcctaaaacttaacattctcattctcaagta |
800 |
Q |
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| T |
9178168 |
attacctttcttgattctacgatgtcggtctttccttagaaagtaataaagtgacatcatgtcggccagtcctaaaacttaacattctaattctcaagta |
9178267 |
T |
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| Q |
801 |
aaagctttggatatactcgatgtgttgttgtatgtaagtccgctttgcatttt |
853 |
Q |
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| T |
9178268 |
aaagctttggatatactcgatgtgttattgtatgtaagttctctttgcatttt |
9178320 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 203; E-Value: 1e-110
Query Start/End: Original strand, 9 - 253
Target Start/End: Original strand, 9177458 - 9177704
Alignment:
| Q |
9 |
tcaacctgttggtatacaatcttaactctctattaatttcttccatggcttccacaaaggtattgaagcttctgattggtggagtatagagnnnnnnngg |
108 |
Q |
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| T |
9177458 |
tcaacctgttggtatacaatcttaactccctattaatttcttccatggcttccacaaaggtattgaagcttctgattggtggagtatagagaaaaaaagg |
9177557 |
T |
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| Q |
109 |
aaggaagtaaggagcagtagataaagccatggtaaacaaaaattcaagcatttttcttttctttggaattatgtaatacccaagagaggaatcacataac |
208 |
Q |
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| T |
9177558 |
aaggaagtaaggagcagtagagaaagccatggtaaacaaaaattcaagcatttttcttttctttggaattatgtaatacccaagagaggaatcacataac |
9177657 |
T |
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| Q |
209 |
aagagac--tgttgaaaactttgatatcaaattgaaacagtgtattc |
253 |
Q |
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| T |
9177658 |
aagagacaaagttgaaaactttgatatcaaattgaaacagtgtattc |
9177704 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 95; E-Value: 5e-46
Query Start/End: Original strand, 257 - 367
Target Start/End: Original strand, 9177733 - 9177843
Alignment:
| Q |
257 |
gttatgtttaatgcaatatttaactcaatgtttagaaagattagatggtgtatgatgaggttatagacagagagatatattttggaaacttcaaggctta |
356 |
Q |
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| T |
9177733 |
gttatgtttaatgcaatatttaactcaatgattaaaaagtttagatggtgtatgatgaggttatagacagagagatatattctggaaacttcaaggctta |
9177832 |
T |
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| Q |
357 |
gtttttatata |
367 |
Q |
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| T |
9177833 |
gtttttatata |
9177843 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 35 - 99
Target Start/End: Original strand, 9190633 - 9190697
Alignment:
| Q |
35 |
tctctattaatttcttccatggcttccacaaaggtattgaagcttctgattggtggagtatagag |
99 |
Q |
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| T |
9190633 |
tctctcttaatttcttccatggtttccacaaaagaattcaagcttctgattggtggaatatagag |
9190697 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 71; Significance: 1e-31; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 643 - 814
Target Start/End: Original strand, 47823988 - 47824162
Alignment:
| Q |
643 |
gctacaactctgccacgtattcacatgccaacgtggta--ggtcaaaccttcacattcgcat----tacctttcttgattctacgatgtcggtctttctt |
736 |
Q |
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| T |
47823988 |
gctacaactctgccacgtattcacatgccaacgtggtaagtgttaaaccttcgctttcgcatttcatacctttcttatgtctacgacgtcgttcttactt |
47824087 |
T |
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| Q |
737 |
tagaaagtaataaagtgacatcatgtcggccagtcctaaaacttaacattctcattctcaagtaaaagctttggatat |
814 |
Q |
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| T |
47824088 |
tagagagta--aaagtgacatcatgtcggccagtactaaaac-taacaatctcattctcaggtaaaaactttggatat |
47824162 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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