View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5946-Insertion-4 (Length: 850)

Name: NF5946-Insertion-4
Description: NF5946
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5946-Insertion-4
NF5946-Insertion-4
[»] chr2 (2 HSPs)
chr2 (341-850)||(35330794-35331305)
chr2 (9-260)||(35331386-35331639)


Alignment Details
Target: chr2 (Bit Score: 444; Significance: 0; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 444; E-Value: 0
Query Start/End: Original strand, 341 - 850
Target Start/End: Complemental strand, 35331305 - 35330794
Alignment:
Q  341 tgagcaaattgatagtccacttactgatagactttgtttggttttatattagttgaagaagctaatgataacctcaacgagaaaagtgattttgcaaacc 440  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  35331305 tgagcaaattgatagtccacttactgatagactttgtttggttttatattagttgaagaagctattgataacctcaacgagaaaagtgattttgcaaacc 35331206  T
Q  441 tacaagttgttgctgagaaaggacttaaggtgttcactttcaagcagctgcattctgctactggaggtttcagcaagtcaaatatagtcggtcatggtgg 540  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35331205 tacaagttgttgctgagaaaggacttaaggtgttcactttcaagcagctgcattctgctactggaggtttcagcaagtcaaatatagtcggtcatggtgg 35331106  T
Q  541 atttggacttgtttaccgtggagtgctcaacgatggaaggaaggttgcgattaaattaatggatcaggcaggaaagcaaggagaagaagagtttaaagtt 640  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35331105 atttggacttgtttaccgtggagtgctcaacgatggaaggaaggttgcgattaaattaatggatcaggcaggaaagcaaggagaagaagagtttaaagtt 35331006  T
Q  641 gaggtttgtacattttcatatgcacttcatttgccttgttataaaatttgtagaatatggatcaaaatga--nnnnnnnnnnnggcattaagtcaatcaa 738  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||             |||||||||||||| ||    
T  35331005 gaggtttgtacattttcatatgcacttcatttgccttgttataaaatctgtagaatatggatcataatgatttttttttttttggcattaagtcaatgaa 35330906  T
Q  739 ttcgatagagatcagtgaccttggaagacattttattttgcgaattggttgattaattgcatctcattgtaggtgggattgctaagtcggttgcattctc 838  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  35330905 ttcgatagagatcattgaccttggaagacattttattttgcgaattggttgattaattgcatctcattgtaggtggaattgctaagtcggttgcattctc 35330806  T
Q  839 cgtatttgcttg 850  Q
    ||||||||||||    
T  35330805 cgtatttgcttg 35330794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 9 - 260
Target Start/End: Complemental strand, 35331639 - 35331386
Alignment:
Q  9 caatgtttgtcagttgtgctatttgcatgtgcttgttttttgtctgaaaatttgg--tgtttcatatgtgaagtgaaaattgttttgccaccctgctctt 106  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||| |||||||||    
T  35331639 caatgtttgtcagttgtgctatttgcatgtgcttgttttttgtctgaaaatttggagtgtttcatatgtgaagtgaaaattgttttgccatcctgctctt 35331540  T
Q  107 ttcaaccttggatatcaaattcaacttgctaattgttatactttttcaaccaaaataattgtatattttctttttgtacagtatgaataataatgatagt 206  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  35331539 ttcaaccttggatatcaaattccacttgctaattgttatactttttcaaccaaaataattgtatattttctttttgtacggtatgaataataatgatagt 35331440  T
Q  207 cacatatggatctttatattcgaatgtgatgtatcttgaaaagtggaatgatgc 260  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  35331439 cacatatggatctttatattggaatgtgatgtatcttgaaaagtggaatgatgc 35331386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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