View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5946-Insertion-5 (Length: 660)
Name: NF5946-Insertion-5
Description: NF5946
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5946-Insertion-5 |
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| [»] chr8 (3 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 586; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 586; E-Value: 0
Query Start/End: Original strand, 9 - 660
Target Start/End: Complemental strand, 34444791 - 34444140
Alignment:
| Q |
9 |
agattctcacataggatagagtatcactatgaaatatgaatcagtaatgtactgttatggagctatcgaataggttcgcttgttagttgttgtgactgaa |
108 |
Q |
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| T |
34444791 |
agattctcacataggatagagtatcactatgaaatatgaatcagtaatgtactgttatggagctatcaaataggttctcttgttagttgttgtgactgaa |
34444692 |
T |
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| Q |
109 |
tatttcattggattcatgatatctatctaaagtggtgctttccaaacataaatagtagtactgttttgtattcagtacgttgggaaaggtgcctgccatg |
208 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||| |
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| T |
34444691 |
tatttcattggattcatgatatctatctaaagtggtgctttccaaacataaatagtatt---gttttgtattcagtacgttgggaaaggtgcctgccatg |
34444595 |
T |
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| Q |
209 |
tcttagtacttttcaggaataattctctttgtcagtgtattttcacagaactttcaactctatacttatgaattctgtcatcatagttttgtaaacattg |
308 |
Q |
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| T |
34444594 |
tcttagtacttttcaggaataattctctttgtcagtgtattttcacagaactttcaactctatacttatgaattctgtcatcatagttttgtaaacattg |
34444495 |
T |
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| Q |
309 |
aaagtagaacatgaaaagatgagccatcatcaaatgagatgccttagaaaaggttggtatca-ttagcaataattgaagggaaacaattgcaccacgatg |
407 |
Q |
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| T |
34444494 |
aaagtagaacatgaaaagatgagccatcatcaaatgaaatgccttagaaaaggttggtatcatttagcaataattgaagggaaacaattgcaccacaatg |
34444395 |
T |
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| Q |
408 |
ccaacacaaaagctaccacatggatgtttggaagaaatcacggtcactccataattttgttgaagttttaaagtgtaatttttatcaaaattagagtg-- |
505 |
Q |
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| T |
34444394 |
ccaacacaaaagctaccacatggatgtttggaagaaatcatggtcactccataattttgttgaagttttaaagtgtaatttttatcaaaattagagtgac |
34444295 |
T |
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| Q |
506 |
acactctgattacgctgaagtaattgtgaatccaaactgtggagaatgtgattttcttaaaaatgtatgttgctaaaagaatcacaatagtacctccatt |
605 |
Q |
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| T |
34444294 |
acactctgattacgctgaactaattgtgaatccaaacttttgagaatgtgattttcttaaaaatgtatgttgctaaaagaatcacaatagtacctccatt |
34444195 |
T |
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| Q |
606 |
ttcttcatttccatttcagcttttcttatctgatgattttcccaggcttgaatct |
660 |
Q |
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| T |
34444194 |
ttcttcatttccatttcagcttttcttatctgatgattttcccaggcttgaatct |
34444140 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 9 - 85
Target Start/End: Complemental strand, 4456967 - 4456891
Alignment:
| Q |
9 |
agattctcacataggatagagtatcactatgaaatatgaatcagtaatgtactgttatggagctatcgaataggttc |
85 |
Q |
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| T |
4456967 |
agattctcacatagaatagagtatcactatgaaatatgaatcagcaatgtactgttatggagctatcaaataggttc |
4456891 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 461 - 509
Target Start/End: Original strand, 6019598 - 6019646
Alignment:
| Q |
461 |
attttgttgaagttttaaagtgtaatttttatcaaaattagagtgacac |
509 |
Q |
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| T |
6019598 |
attttgttgaagttataaagtgtagtttttgtcaaaattatggtgacac |
6019646 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 461 - 500
Target Start/End: Complemental strand, 5084094 - 5084055
Alignment:
| Q |
461 |
attttgttgaagttttaaagtgtaatttttatcaaaatta |
500 |
Q |
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| T |
5084094 |
attttgttgaaattttaaagtgtaaattttatcaaaatta |
5084055 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 461 - 505
Target Start/End: Original strand, 16067532 - 16067576
Alignment:
| Q |
461 |
attttgttgaagttttaaagtgtaatttttatcaaaattagagtg |
505 |
Q |
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|||||||||| | ||||||||||| ||||||||||||||| |||| |
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| T |
16067532 |
attttgttgatgctttaaagtgtagtttttatcaaaattacagtg |
16067576 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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