View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5946-Insertion-6 (Length: 564)
Name: NF5946-Insertion-6
Description: NF5946
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5946-Insertion-6 |
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Alignment Details
Target: chr1 (Bit Score: 428; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 428; E-Value: 0
Query Start/End: Original strand, 12 - 471
Target Start/End: Complemental strand, 30942732 - 30942273
Alignment:
| Q |
12 |
ttgtcatatggttctccactacatgagatttaaaaatacattaagtccaaattaattattcaaacagattgcttcaacatgttagtcctgaatcaaataa |
111 |
Q |
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| T |
30942732 |
ttgtcgtatggttctccactacatgagatttaaaaatacattaagtccaaattaattattcaaacaggttgcttcaacatgttagtcctgaatcaaataa |
30942633 |
T |
|
| Q |
112 |
atttcatcaaacctgcaagttaatggaaaaccatctagatctttgcttatagagcggccgctgtcattgctaaatcgattgtgctgcacaattgatcgaa |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30942632 |
atttcatcaaacctgcaagttaatggaaaaccatctagatctctgcttatagagcggccgctgtcattgctaaatcgattgtgctgcacaattgatcgaa |
30942533 |
T |
|
| Q |
212 |
ccgattaattatctctacctcaagaattatacttcatcggtcctataatagtagtccatttagcagataaataaataatatcatttcattatgtacgtcg |
311 |
Q |
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| T |
30942532 |
ccaattaattatctctacctcaagaattatacttcatctgtcctataatagtagtccatttagcagataaataaataatatcatttcattatgtatgttg |
30942433 |
T |
|
| Q |
312 |
tgttgagtatatatagttcatatagacacaaaagaggagcaaggagcgaggaagatgagcgagaatagtgaccttcactcctgcttctgcgtttgtctca |
411 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
30942432 |
tgttgagtatatatagttcatatagacacaaaagaggagcaaggagcgaggaagatgagcgagaatagtgaccttcactcttgcttctgcgtttgtctca |
30942333 |
T |
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| Q |
412 |
aaggtgcattaggcccaattgttatttgtgtgtgaggagcgtagcgacctatgctcctgc |
471 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30942332 |
aaggtgcattaggcccaattgttatttgtgtgtgaggagcgtagcgacctatgctcctgc |
30942273 |
T |
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