View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5946-Insertion-8 (Length: 175)
Name: NF5946-Insertion-8
Description: NF5946
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5946-Insertion-8 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 159; Significance: 6e-85; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 159; E-Value: 6e-85
Query Start/End: Original strand, 9 - 175
Target Start/End: Complemental strand, 6796839 - 6796673
Alignment:
| Q |
9 |
aggacagtttgttcccagaactccatcttgccatgaatttttcctttgtttaatgccgttcctagtttattcccaacaatgttaaatcatgttctcgcag |
108 |
Q |
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| T |
6796839 |
aggacagtttgttcccagtactccatcttgccatgaatttttcctttgtttaatgccattcctagtttattcccaacaatgttaaatcatgttctcgcag |
6796740 |
T |
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| Q |
109 |
aaaatcccacaaaccaacaagtaatgcgaacaaatagaaaaacatacaaaagaaaacacaagtttac |
175 |
Q |
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| T |
6796739 |
aaaatcccacaaaccaacaagtaatgcgaacaaatagaaaaacatacaaaagaaaacacaagtttac |
6796673 |
T |
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Target: chr8 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 10 - 77
Target Start/End: Original strand, 33846420 - 33846487
Alignment:
| Q |
10 |
ggacagtttgttcccagaactccatcttgccatgaatttttcctttgtttaatgccgttcctagttta |
77 |
Q |
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| T |
33846420 |
ggacagttggttcctaataccccatcttgccatgaatttttcctttgtttaatgccattcctagttta |
33846487 |
T |
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