View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5946_high_4 (Length: 407)
Name: NF5946_high_4
Description: NF5946
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5946_high_4 |
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Alignment Details
Target: chr3 (Bit Score: 334; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 9 - 396
Target Start/End: Original strand, 45653049 - 45653432
Alignment:
| Q |
9 |
cctatgtcctttgcttgtccaatattcaaatcttttttgtagctacaagacctaatattaaaccgattaggcagttgtaatagcgagtacctcactatta |
108 |
Q |
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| T |
45653049 |
cctatgtcctttgcttgtccaatattcaaatcttttttgtagctacaagacctaatattaaaccgattaggcagttgtaatagcgagtacctcactatta |
45653148 |
T |
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| Q |
109 |
tagtgttaagtattttcaataagtgattaacaaattaagatattataagaatttcataacaaatcatgaatttgttaaactaacaatttataacttttct |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||| |
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| T |
45653149 |
tagtgttaagtattttcaataagtgattaacaaattaagatattataagaatttcataacaaatcatgaatttgttaaactaacaatttagaatttttct |
45653248 |
T |
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| Q |
209 |
cattttactcgcttgaccagcttatagcatagtagtttctacgatcaaagtggagtttgtgtcttctttcacaagtttacaacannnnnnnatattgcta |
308 |
Q |
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| T |
45653249 |
cattttactcgcttggccagcttatagcatagtagtttctacgatcaaagtggagtttgtgtcttctttcacaagtttacaacatatttttatattgcta |
45653348 |
T |
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| Q |
309 |
catcaagcgtttgaatgcaaccactaattaatttgcaatctgttgtcagcttgctgattcacccttcactgttttcgtacctatattc |
396 |
Q |
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| T |
45653349 |
catcaagcgtttgaatgcaaccac----taatttgcaatctgttgtcagcttgctgattcgcccttcactgttttcgtacctatattc |
45653432 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 9 - 187
Target Start/End: Original strand, 45648616 - 45648793
Alignment:
| Q |
9 |
cctatgtcctttgcttgtccaatattcaaatcttttttgtagctacaagacctaatattaaaccgattaggcagttgtaatagcgagtacctcactatta |
108 |
Q |
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||||||||||||||||| | ||||||||| | |||||||| ||| |||||| |||||| |||||||||||| ||||||| || ||||| |||||||||| |
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| T |
45648616 |
cctatgtcctttgcttgcctaatattcaatt-ttttttgtttctataagacccaatattgaaccgattaggccgttgtaa-agtgagtaactcactatta |
45648713 |
T |
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| Q |
109 |
tagtgttaagtattttcaataagtgattaacaaattaagatatt-ataagaatttcataacaaatcatgaatttgttaaa |
187 |
Q |
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|||||| |||||||||||| ||||||||| ||||||||||| || |||| || | ||||||||||| ||||||||||| |
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| T |
45648714 |
tagtgtaaagtattttcaacaagtgattagcaaattaagatgttggtaagtatattataacaaatcaacaatttgttaaa |
45648793 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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