View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5946_low_1 (Length: 685)
Name: NF5946_low_1
Description: NF5946
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5946_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 593; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 593; E-Value: 0
Query Start/End: Original strand, 9 - 667
Target Start/End: Original strand, 34444133 - 34444791
Alignment:
| Q |
9 |
gaaatgaagattcaagcctgggaaaatcatcagataagaaaagctgaaatggaaatgaagaaaatggaggtactattgtgattcttttagcaacatacat |
108 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34444133 |
gaaatgaagattcaagcctgggaaaatcatcagataagaaaagctgaaatggaaatgaagaaaatggaggtactattgtgattcttttagcaacatacat |
34444232 |
T |
|
| Q |
109 |
ttttaagaaaatcacattctccacagtttggattcacaattacttcagcgtaatcagagtgt--cactctaattttgataaaaattacactttaaaactt |
206 |
Q |
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||||||||||||||||||||| | |||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
34444233 |
ttttaagaaaatcacattctcaaaagtttggattcacaattagttcagcgtaatcagagtgtgtcactctaattttgataaaaattacactttaaaactt |
34444332 |
T |
|
| Q |
207 |
caacaaaattatggagtgaccgtgatttcttccaaacatccatatggtagcttttgtgttggcattgtggtgcaattgtttcccttcaattattgctaa- |
305 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34444333 |
caacaaaattatggagtgaccatgatttcttccaaacatccatgtggtagcttttgtgttggcattgtggtgcaattgtttcccttcaattattgctaaa |
34444432 |
T |
|
| Q |
306 |
tgataccaaccttttctaaggcatctcatttgatgatggctcatcttttcatgttctactttcaatgtttacaaaactatgatgacagaattcataagta |
405 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34444433 |
tgataccaaccttttctaaggcatttcatttgatgatggctcatcttttcatgttctactttcaatgtttacaaaactatgatgacagaattcataagta |
34444532 |
T |
|
| Q |
406 |
tagagttgaaagttctgtgaaaatacactgacaaagagaattattcctgaaaagtactaagacatggcaggcacctttcccaacgtactgaatacaaaac |
505 |
Q |
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| T |
34444533 |
tagagttgaaagttctgtgaaaatacactgacaaagagaattattcctgaaaagtactaagacatggcaggcacctttcccaacgtactgaatacaaaac |
34444632 |
T |
|
| Q |
506 |
agtactactatttatgtttggaaagcaccactttagatagatatcatgaatccaatgaaatattcagtcacaacaactaacaagcgaacctattcgatag |
605 |
Q |
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| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||| |
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| T |
34444633 |
---aatactatttatgtttggaaagcaccactttagatagatatcatgaatccaatgaaatattcagtcacaacaactaacaagagaacctatttgatag |
34444729 |
T |
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| Q |
606 |
ctccataacagtacattactgattcatatttcatagtgatactctatcctatgtgagaatct |
667 |
Q |
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| T |
34444730 |
ctccataacagtacattactgattcatatttcatagtgatactctatcctatgtgagaatct |
34444791 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 591 - 667
Target Start/End: Original strand, 4456891 - 4456967
Alignment:
| Q |
591 |
gaacctattcgatagctccataacagtacattactgattcatatttcatagtgatactctatcctatgtgagaatct |
667 |
Q |
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| T |
4456891 |
gaacctatttgatagctccataacagtacattgctgattcatatttcatagtgatactctattctatgtgagaatct |
4456967 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 167 - 215
Target Start/End: Complemental strand, 6019646 - 6019598
Alignment:
| Q |
167 |
gtgtcactctaattttgataaaaattacactttaaaacttcaacaaaat |
215 |
Q |
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| T |
6019646 |
gtgtcaccataattttgacaaaaactacactttataacttcaacaaaat |
6019598 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 176 - 215
Target Start/End: Original strand, 5084055 - 5084094
Alignment:
| Q |
176 |
taattttgataaaaattacactttaaaacttcaacaaaat |
215 |
Q |
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|||||||||||||| ||||||||||||| ||||||||||| |
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| T |
5084055 |
taattttgataaaatttacactttaaaatttcaacaaaat |
5084094 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 171 - 215
Target Start/End: Complemental strand, 16067576 - 16067532
Alignment:
| Q |
171 |
cactctaattttgataaaaattacactttaaaacttcaacaaaat |
215 |
Q |
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|||| ||||||||||||||| ||||||||||| | |||||||||| |
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| T |
16067576 |
cactgtaattttgataaaaactacactttaaagcatcaacaaaat |
16067532 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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