View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5946_low_3 (Length: 412)
Name: NF5946_low_3
Description: NF5946
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5946_low_3 |
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| [»] chr3 (3 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 261; Significance: 1e-145; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 1 - 412
Target Start/End: Original strand, 28832836 - 28833250
Alignment:
| Q |
1 |
gttatctcatctccaaacaatggtaaaaattagttaaggatggtgctacaacttaaactgatattcctaacgttggtgtgttggaacatattaattagtt |
100 |
Q |
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| T |
28832836 |
gttatctcatctccaaacaatggtaaaaattagttaaggatggtgctacaacttaaactgatattcctaacgttggtgtattggaacatattaattagtt |
28832935 |
T |
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| Q |
101 |
atgatgattgtctagtacatggtgattcacaaacaagtacgataatgattggatgtgacaaattatcgtatagtcaagcagacatgcgtagcatattcta |
200 |
Q |
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| T |
28832936 |
atgctgattgtctagtacatggtgattcacaaacaaatatgctattgaatggatgtaacatattctcctatactgatgcaaacatgcgtcgcatatccta |
28833035 |
T |
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| Q |
201 |
tgaaaacctcaacagaacatttatagatttgagaaatcaaattagcaatgaaagcaagcactttgccacatc---acaacaagacacaggagcagtaact |
297 |
Q |
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| T |
28833036 |
tgaaaacatcaacgaaacttttctagatttgagaaatcaaattagcaatcaaagcaagcactttgccacatcacaacaacaagccatagatgaggtaaaa |
28833135 |
T |
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| Q |
298 |
gtatattctatgtttcaatgtagaaattacctatccaaaaatgattgtgttgcttgcttcaacaccgcatctaccaaaatcagtacctgcgcttccattg |
397 |
Q |
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| T |
28833136 |
gtatattctatgtttcaatgtagaaattacctctccaaaaatgattgtgttgcttgcttcaacactgcttctaccgaaatcagtacctgcgcttccattg |
28833235 |
T |
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| Q |
398 |
gggctagatttatct |
412 |
Q |
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| T |
28833236 |
gggctagatttatct |
28833250 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 215 - 378
Target Start/End: Original strand, 28823797 - 28823960
Alignment:
| Q |
215 |
gaacatttatagatttgagaaatcaaattagcaatgaaagcaagcactttgccacatcacaacaagacacaggagcagtaactgtatattctatgtttca |
314 |
Q |
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| T |
28823797 |
gaacatttttagatttgaagaatcaaattagcaatgaaagcaaacactttgccacatcacaacaagccataggtgaggtaattgtattttctatgtttca |
28823896 |
T |
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| Q |
315 |
atgtagaaattacctatccaaaaatgattgtgttgcttgcttcaacaccgcatctaccaaaatc |
378 |
Q |
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| T |
28823897 |
atgtagaaattacctctccaaaaatgattgtgttggttgcttcaacattgcctctaccaaaatc |
28823960 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 34 - 105
Target Start/End: Original strand, 28823628 - 28823699
Alignment:
| Q |
34 |
ttaaggatggtgctacaacttaaactgatattcctaacgttggtgtgttggaacatattaattagttatgat |
105 |
Q |
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| T |
28823628 |
ttaaggatgatgctgcaactcaagctagtgttcataaccttggtgtgttggaacatattaattagttatgat |
28823699 |
T |
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