View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5946_low_5 (Length: 321)
Name: NF5946_low_5
Description: NF5946
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5946_low_5 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 201; Significance: 1e-109; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 69 - 309
Target Start/End: Original strand, 28833403 - 28833646
Alignment:
| Q |
69 |
caatagatttgttattaaccaggttatggacttctgttatggattataaaagaaaatgatttcgcaccagggttaatcgccatttgatgccaattttgtt |
168 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28833403 |
caatagatttgttattaaccaggttatggacttctgttacggattataaaagaaaatgatttcgcaccagggttaatcgccatttgatgccaattttgtt |
28833502 |
T |
|
| Q |
169 |
agaacaacaa---gtaacnnnnnnnttaatgaaaaagcaaatcacaaacaatataacacgaccatttgtttatgtagctcggctaattgtgtatatctct |
265 |
Q |
| |
|
|||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
28833503 |
agaacaacaacaagtaacaaaaaaattaatgaaaaagcaaatcacaaacaatataacacgaccatttgtttatgtagctgggctaattgtgtatatctct |
28833602 |
T |
|
| Q |
266 |
gtgatagtatctgcgatagtatatcagctatagtttcgtatatt |
309 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28833603 |
gtgatagtatctgcgatagtatatcagctatagtttcgtatatt |
28833646 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 28833249 - 28833316
Alignment:
| Q |
1 |
ctacgatgggtgtttcctcaggtatgtccatatgaagttacag-gtccaagttagtactatgaactta |
67 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||| |
|
|
| T |
28833249 |
ctacgatgggtgtttcctcaggtatgtccatatgaagtgacagcatccaagttagtactatgaactta |
28833316 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University