View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5946_low_8 (Length: 239)
Name: NF5946_low_8
Description: NF5946
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5946_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 217; Significance: 1e-119; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 9603758 - 9603530
Alignment:
| Q |
1 |
ttgtggcaaaaagaaaatggaaaacagaagggtttgaagggcccctttctcaatatataaaagatgttagggtttctccattcatccacaaactcgctca |
100 |
Q |
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| T |
9603758 |
ttgtggcaaaaagaaaatggaaaacagaagggtttgaagggcccctttctcaatatataaaagatgttagggtttctccattcatccacaaactcgctca |
9603659 |
T |
|
| Q |
101 |
aaaattgtttagggtttctactaatcactttgcgctttcaagatctcattgcattccgatttgcaacctgcaatggagtcggtggctgtaaagaatgaaa |
200 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
9603658 |
aaagttgtttagggtttctactaatcactttgcgctttcaagatctcattgcattccgatttgcaacctgcaatggagtcggtggctgtaaagaacgaaa |
9603559 |
T |
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| Q |
201 |
aggttagcaccacctatatacctgatgat |
229 |
Q |
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||| ||||||||||||||||||||||||| |
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| T |
9603558 |
agggtagcaccacctatatacctgatgat |
9603530 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 38 - 228
Target Start/End: Complemental strand, 9583136 - 9582932
Alignment:
| Q |
38 |
agggcccctttctcaatatataaaagat-gttagggtttctccattcatccacaaactcgctcaaaaattgtttagggtttctact-------------a |
123 |
Q |
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| T |
9583136 |
agggctcctttctcaatatataaaaaagcgctagggtttctatattcatccacagactcgctccaaatttgtttagggtttctgctttctagtaatccca |
9583037 |
T |
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| Q |
124 |
atcactttgcgctttcaagatctcattgcattccgatttgcaacctgcaatggagtcggtggctg-taaagaatgaaaaggttagcaccacctatatacc |
222 |
Q |
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| T |
9583036 |
atcactttgtgctttcaggatctcactgcattccaatttgcaaccgccgatggagtcagtcgctgctaaaaaaagaaa-ggtgagcaccacctatatacc |
9582938 |
T |
|
| Q |
223 |
tgatga |
228 |
Q |
| |
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|||||| |
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| T |
9582937 |
tgatga |
9582932 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 38 - 228
Target Start/End: Complemental strand, 9588831 - 9588627
Alignment:
| Q |
38 |
agggcccctttctcaatatataaaagat-gttagggtttctccattcatccacaaactcgctcaaaaattgtttagggtttctact-------------a |
123 |
Q |
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||||| ||||||||||||||||||| | | |||||||||| ||||||||||| |||||||| ||| ||||||||||||||| || | |
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| T |
9588831 |
agggctcctttctcaatatataaaaaagcgctagggtttctatattcatccacagactcgctccaaatttgtttagggtttctgctttctagtaatccca |
9588732 |
T |
|
| Q |
124 |
atcactttgcgctttcaagatctcattgcattccgatttgcaacctgcaatggagtcggtggctg-taaagaatgaaaaggttagcaccacctatatacc |
222 |
Q |
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| T |
9588731 |
atcactttgtgctttcaggatctcactgcattccaatttgcaaccgccgatggagtcagtcgctgctaaaaaaagaaa-ggtgagcaccacctatatacc |
9588633 |
T |
|
| Q |
223 |
tgatga |
228 |
Q |
| |
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|||||| |
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| T |
9588632 |
tgatga |
9588627 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 123 - 229
Target Start/End: Complemental strand, 9594833 - 9594727
Alignment:
| Q |
123 |
aatcactttgcgctttcaagatctcattgcattccgatttgcaacctgcaatggagtcggtggctgtaaagaatgaaaaggttagcaccacctatatacc |
222 |
Q |
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||||||||||||||||||| ||||||||||||||| |||| ||||| |||||||| ||||| | ||| || |||||| ||||||||||||||| | |
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| T |
9594833 |
aatcactttgcgctttcaatatctcattgcattccaatttacaaccgctcatggagtcagtggccgcaaaaaagagaaaggtgagcaccacctatatagc |
9594734 |
T |
|
| Q |
223 |
tgatgat |
229 |
Q |
| |
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||||||| |
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| T |
9594733 |
tgatgat |
9594727 |
T |
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