View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5947-Insertion-1 (Length: 992)

Name: NF5947-Insertion-1
Description: NF5947
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5947-Insertion-1
NF5947-Insertion-1
[»] chr6 (3 HSPs)
chr6 (8-969)||(6368315-6369269)
chr6 (496-555)||(5642546-5642605)
chr6 (497-536)||(32312815-32312854)
[»] chr8 (3 HSPs)
chr8 (437-515)||(41146216-41146294)
chr8 (430-511)||(29471776-29471857)
chr8 (497-548)||(41146130-41146181)
[»] chr3 (1 HSPs)
chr3 (442-514)||(48847597-48847669)
[»] chr5 (1 HSPs)
chr5 (457-512)||(12429818-12429873)
[»] chr1 (2 HSPs)
chr1 (497-536)||(9607674-9607713)
chr1 (497-530)||(30192232-30192265)
[»] scaffold0065 (1 HSPs)
scaffold0065 (497-536)||(49577-49616)
[»] chr4 (2 HSPs)
chr4 (437-515)||(41921941-41922019)
chr4 (497-539)||(41922054-41922096)
[»] chr2 (1 HSPs)
chr2 (505-535)||(36639113-36639143)
[»] chr7 (1 HSPs)
chr7 (442-511)||(10201437-10201506)


Alignment Details
Target: chr6 (Bit Score: 771; Significance: 0; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 771; E-Value: 0
Query Start/End: Original strand, 8 - 969
Target Start/End: Original strand, 6368315 - 6369269
Alignment:
Q  8 acaaactacaagtattagggtttggtttcttcctgttcctgatcattctctgtcttctaacagatactatgtaatcagagctaaaggcagacacaaaggg 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||    
T  6368315 acaaactacaagtattagggtttggtttcttcctgttcctgatcattctttgtcttctaacagatactatgtaatccgagctaaaggcagacacaaaggg 6368414  T
Q  108 tatgtatgtattaaatattttgcatcgtgttgcttcgtattagtatatgagtaaattgtcattttggtccgtaaatgtgtgacgtggt-ctattatagtc 206  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||    
T  6368415 tatgtatgtattaaatattttgcatagtgttgcttcgtattagtatatgagtaaattgtcattttggtccgtaaatgtgtgaggtggtgctattatagtc 6368514  T
Q  207 tctaaatgtatcgaaactttgaaaatatctatggatgtgtcttctgctagtaattttaataagcaccaaatagagaaacggaacacatgtttgacgacaa 306  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||   |||||||||||   |||||| ||||||||||||||||||||    
T  6368515 tctaaatgtatctaaactttgaaaatatctatggatgtgtcttctgctagtaattt---taagcaccaaacgaagaaactgaacacatgtttgacgacaa 6368611  T
Q  307 aattgacgaacgaaagacacatttagagatgttttataaatttgatgtatttgtagaaactatcgtgacactgcttgacatattcaagaattcaaaccaa 406  Q
    |||||||||||||||||||||||||| ||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  6368612 aattgacgaacgaaagacacatttagtgatgttttataaatttggtgtatttgtagagactatcgtgacactgcttgacatattcaagaattcaaaccaa 6368711  T
Q  407 ttgaacttaattcttccatatgcttacttggtgtatgtttggtttcacgtttgcaacacagaaaagcacacttgcacgcttcccgatgcatttttgccgt 506  Q
    ||||||||||||||||||||||||||||| |||  ||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||    
T  6368712 ttgaacttaattcttccatatgcttacttagtg--tgtttggtttcacgtttgcaacacagaaaagcacgtttgcacgcttcccgatgcatttttgccgt 6368809  T
Q  507 gattttcatcaaactccgttttgcaaacgcaatacctaacatgcacttagttacttgtctttgttttctgtgagattttatattttttcaac---aatat 603  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||    
T  6368810 gattttcatcaaactccgttttgcaaacgcaatacctaacatgcacttagttacttgtctttgttttctgtgagattttatattttttcaacaataatat 6368909  T
Q  604 gtgccatatgatcttcttttgtcagtatggaactataattgatcatgtgctcaagcttataaggttgtttaagtcttttgtgctgacattaatgtttgtt 703  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      
T  6368910 gtgccatatgatcttcttttgtcagtatggaactataattgatcatgtgctcaagcttataaggttgtttaagtcttttgtgctgacattaatgtttg-- 6369007  T
Q  704 attattattattatcagtacttcagaagcctgtccaattgttatgcttagcaattagcataagctgaatt-ataactaagattatgtcctagtatggatt 802  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  6369008 -ttattattattatcagtacttcagaagcctgtccaattgttatgcttagcaattagcataagctgaattcataactaagattatgtcctagtatggatt 6369106  T
Q  803 aatatctaacttataaggagtttctcatttaagttcataggttcttaaaaataagtaaaggaagtcactataagctttagttatatgggaaactc-aatg 901  Q
    |||||||||||||||| |||||||||||||||||||||| ||||||||||| ||||||| ||||||||||||||||| || ||||| |||||||| ||||    
T  6369107 aatatctaacttataa-gagtttctcatttaagttcata-gttcttaaaaagaagtaaa-gaagtcactataagcttaag-tatat-ggaaactcaaatg 6369201  T
Q  902 agatagcttctatgagaattgagataaaataactatttttaacttatatgataagctattgttaaaaa 969  Q
    ||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  6369202 agatagcttttaagagaattgagataaaataactatttttaacttatatgataagctattgtttaaaa 6369269  T

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Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 496 - 555
Target Start/End: Complemental strand, 5642605 - 5642546
Alignment:
Q  496 atttttgccgtgattttcatcaaactccgttttgcaaacgcaatacctaacatgcactta 555  Q
    ||||||| |||||||||||| |||||||||||| ||||| ||||||| ||||||| ||||    
T  5642605 atttttgtcgtgattttcattaaactccgttttacaaacccaataccaaacatgctctta 5642546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 497 - 536
Target Start/End: Complemental strand, 32312854 - 32312815
Alignment:
Q  497 tttttgccgtgattttcatcaaactccgttttgcaaacgc 536  Q
    ||||||||||||||| ||||||| ||||||||||||||||    
T  32312854 tttttgccgtgatttccatcaaagtccgttttgcaaacgc 32312815  T

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Target: chr8 (Bit Score: 55; Significance: 4e-22; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 437 - 515
Target Start/End: Complemental strand, 41146294 - 41146216
Alignment:
Q  437 gtgtatgtttggtttcacgtttgcaacacagaaaagcacacttgcacgcttcccgatgcatttttgccgtgattttcat 515  Q
    |||||||||||||||| ||||||||||||| ||||||| |||||||||||| ||||| |||||||||||||||| ||||    
T  41146294 gtgtatgtttggtttcccgtttgcaacacacaaaagcatacttgcacgctttccgatacatttttgccgtgattctcat 41146216  T

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Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 430 - 511
Target Start/End: Complemental strand, 29471857 - 29471776
Alignment:
Q  430 ttacttggtgtatgtttggtttcacgtttgcaacacagaaaagcacacttgcacgcttcccgatgcatttttgccgtgattt 511  Q
    |||||||| || ||||||||||  ||||||||||| | ||||||||| ||||| |||||||||||||||||||  |||||||    
T  29471857 ttacttggcgtgtgtttggttttccgtttgcaacatataaaagcacatttgcatgcttcccgatgcatttttgttgtgattt 29471776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 497 - 548
Target Start/End: Complemental strand, 41146181 - 41146130
Alignment:
Q  497 tttttgccgtgattttcatcaaactccgttttgcaaacgcaatacctaacat 548  Q
    |||||||||||||||  ||||||||||||||||||||| |||| || |||||    
T  41146181 tttttgccgtgatttctatcaaactccgttttgcaaacacaatgccaaacat 41146130  T

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Target: chr3 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 442 - 514
Target Start/End: Original strand, 48847597 - 48847669
Alignment:
Q  442 tgtttggtttcacgtttgcaacacagaaaagcacacttgcacgcttcccgatgcatttttgccgtgattttca 514  Q
    ||||||||||  ||||||||||| | |||||||   ||||||| || ||||||||||||||||||||||||||    
T  48847597 tgtttggttttccgtttgcaacatacaaaagcatgtttgcacgttttccgatgcatttttgccgtgattttca 48847669  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000009; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 457 - 512
Target Start/End: Complemental strand, 12429873 - 12429818
Alignment:
Q  457 ttgcaacacagaaaagcacacttgcacgcttcccgatgcatttttgccgtgatttt 512  Q
    |||||||||| ||||||||  |||||||||| || |||||||||||||||||||||    
T  12429873 ttgcaacacataaaagcacgtttgcacgctttccaatgcatttttgccgtgatttt 12429818  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000009; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 497 - 536
Target Start/End: Original strand, 9607674 - 9607713
Alignment:
Q  497 tttttgccgtgattttcatcaaactccgttttgcaaacgc 536  Q
    |||||||||||||||||||||||| |||||||||||||||    
T  9607674 tttttgccgtgattttcatcaaacaccgttttgcaaacgc 9607713  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 497 - 530
Target Start/End: Complemental strand, 30192265 - 30192232
Alignment:
Q  497 tttttgccgtgattttcatcaaactccgttttgc 530  Q
    ||||||||||||||||||||||||||| ||||||    
T  30192265 tttttgccgtgattttcatcaaactccattttgc 30192232  T

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Target: scaffold0065 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0065
Description:

Target: scaffold0065; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 497 - 536
Target Start/End: Original strand, 49577 - 49616
Alignment:
Q  497 tttttgccgtgattttcatcaaactccgttttgcaaacgc 536  Q
    |||||| |||||||||||| ||||||||||||||||||||    
T  49577 tttttgtcgtgattttcattaaactccgttttgcaaacgc 49616  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000009; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 437 - 515
Target Start/End: Original strand, 41921941 - 41922019
Alignment:
Q  437 gtgtatgtttggtttcacgtttgcaacacagaaaagcacacttgcacgcttcccgatgcatttttgccgtgattttcat 515  Q
    ||||||||||| ||||   ||||||||||| |||| |||  |||||| ||| || ||||||||||||||||||| ||||    
T  41921941 gtgtatgtttgatttcctctttgcaacacacaaaaacacgtttgcacactttccaatgcatttttgccgtgattctcat 41922019  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 497 - 539
Target Start/End: Original strand, 41922054 - 41922096
Alignment:
Q  497 tttttgccgtgattttcatcaaactccgttttgcaaacgcaat 539  Q
    |||||||||||||||  ||||||||||||||| ||||||||||    
T  41922054 tttttgccgtgatttctatcaaactccgtttttcaaacgcaat 41922096  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000009; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 505 - 535
Target Start/End: Original strand, 36639113 - 36639143
Alignment:
Q  505 gtgattttcatcaaactccgttttgcaaacg 535  Q
    |||||||||||||||||||||||||||||||    
T  36639113 gtgattttcatcaaactccgttttgcaaacg 36639143  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 442 - 511
Target Start/End: Complemental strand, 10201506 - 10201437
Alignment:
Q  442 tgtttggtttcacgtttgcaacacagaaaagcacacttgcacgcttcccgatgcatttttgccgtgattt 511  Q
    ||||||||||  ||||||||||||| |||| |||  |||||||||| | |||| |||||||| |||||||    
T  10201506 tgtttggttttccgtttgcaacacacaaaatcacgtttgcacgctttctgatgtatttttgctgtgattt 10201437  T

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