View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5947-Insertion-2 (Length: 865)
Name: NF5947-Insertion-2
Description: NF5947
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5947-Insertion-2 |
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Alignment Details
Target: chr2 (Bit Score: 174; Significance: 4e-93; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 174; E-Value: 4e-93
Query Start/End: Original strand, 195 - 376
Target Start/End: Original strand, 43903084 - 43903265
Alignment:
| Q |
195 |
acctaaaataaaatgataatttagacatatatactagtgagcgatattttcggctaaaaggatacaaaactaggaacaagtcatccatcatgttacaaat |
294 |
Q |
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| T |
43903084 |
acctaaaataaaatgataatttagacatatatactagtgagcgatattttcggctaaaaggatacaaaactaggaacaagtcatccatcatgttacaaat |
43903183 |
T |
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| Q |
295 |
tgacatgcccccactcactctaaccaaacattagaatgatgataacctgaaatcaagcatgaacgaactcgtgctttttagt |
376 |
Q |
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| T |
43903184 |
tgacgtgcccccactcactctaaccaaacattataatgatgataacctgaaatcaagcatgaacgaactcgtgctttttagt |
43903265 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 162; E-Value: 5e-86
Query Start/End: Original strand, 584 - 803
Target Start/End: Original strand, 43903537 - 43903744
Alignment:
| Q |
584 |
agggaataaaaatatgacttcacgttgaatgattagattagattagattagatagataaatgatacatatctaaacaaattctatacataccaaagtgtt |
683 |
Q |
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| T |
43903537 |
agggaataaaaatatgacttcacgttgaatgatt----------agattagatagataaatgatacatatctaaacaaattctatagataccaaggtgtt |
43903626 |
T |
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| Q |
684 |
accctaagttcaatttttatatacataaaataaaatagacttaattgtagcaccaaaagtcactttttaggtgtgaaaatagagaaatcaaaacgtttga |
783 |
Q |
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| T |
43903627 |
cccctaagttcaatttttatatacataaaataaaatagacttaattgtagcaccaaaagtcactttttag--gtgaaaatagagaaatcaaaacgtttga |
43903724 |
T |
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| Q |
784 |
ttttaaatggggactattaa |
803 |
Q |
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| T |
43903725 |
ttttaaatggggactattaa |
43903744 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 487 - 568
Target Start/End: Original strand, 43903382 - 43903462
Alignment:
| Q |
487 |
ggatagagaggtagagaaagaggagtattttagagtcaccatgtcgcaaatgtttgtttgtcaaatgataataacatttgaa |
568 |
Q |
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| T |
43903382 |
ggatagagaggtagagaa-gaggagtatttgagagtcaccatgtcgcaaatgtttgtttgtcaaatgataataacatttgaa |
43903462 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 788 - 861
Target Start/End: Original strand, 43903760 - 43903834
Alignment:
| Q |
788 |
aaatggggactattaaatcaatatcaatatataatacatttttctttgaattattaacc-ttttttaataataaa |
861 |
Q |
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| T |
43903760 |
aaatggggactattaaatcaatatcaatatataatacatttttctttgaattattaacctttttttaataataaa |
43903834 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 381 - 453
Target Start/End: Original strand, 43903311 - 43903383
Alignment:
| Q |
381 |
tttgcaaaataaaaaagcataagaaaattctcctcaaatgataatcattacattgatcaccacaaagttatgg |
453 |
Q |
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| T |
43903311 |
tttgcaaaataaaaaagcataagaaaattctcctcaaatgataatcattacattgatgatcataaagttatgg |
43903383 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 60 - 126
Target Start/End: Original strand, 43902740 - 43902811
Alignment:
| Q |
60 |
tttaaaaactttaaattaagttaaagtagatgc-----aaagagatgataaaatgttgcgcatacattacat |
126 |
Q |
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| T |
43902740 |
tttaaaaactttaaattaagttaaagtagatgcaaattaaagagatgataaaatgttgcacatacattacat |
43902811 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 130 - 167
Target Start/End: Original strand, 43902961 - 43902998
Alignment:
| Q |
130 |
tctagtatgattacttaaactgaaatgatctacacgac |
167 |
Q |
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| T |
43902961 |
tctaatatgattacttaaactgaaatgatctacacgac |
43902998 |
T |
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