View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5947-Insertion-3 (Length: 520)
Name: NF5947-Insertion-3
Description: NF5947
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5947-Insertion-3 |
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Alignment Details
Target: chr8 (Bit Score: 124; Significance: 1e-63; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 344 - 500
Target Start/End: Original strand, 303037 - 303193
Alignment:
| Q |
344 |
tcaaaaatgatgacatgacaaccacctgnnnnnnngtcccttaccttaatatatatccgagatagatccgcattactaggaagggcattgcacatttagt |
443 |
Q |
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| T |
303037 |
tcaaaaatgataacatgacaaccacctgtttttttgtcctttaccttaatatatatccgagatagatccgcattactaggaagggcattgcacatttagt |
303136 |
T |
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| Q |
444 |
tgtttactgctgacgtcatccagttacataatgactatgatgtcatgtcatccatat |
500 |
Q |
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| T |
303137 |
tgtttgctgctgacgtcatccagttacataatgactatgatgtcatgtcatccatat |
303193 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 118; E-Value: 6e-60
Query Start/End: Original strand, 112 - 253
Target Start/End: Original strand, 302820 - 302961
Alignment:
| Q |
112 |
gttagaatttgcctataatttaggtgtacataataaataataaattataaaactcatttcgtgtgggatattgaagtatgattcttcttaaagtcacacg |
211 |
Q |
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| T |
302820 |
gttagaatttgcctataatttaggtgtacacaataaataataaattataaaactcatttgatgtggaatattggagtatgattcttcttaaagtcacacg |
302919 |
T |
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| Q |
212 |
ttagattgatctctttgatgagagttagtttagtttcttctt |
253 |
Q |
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| T |
302920 |
ttcgattgatctctttgatgagagttagtttagtttcttctt |
302961 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 9 - 120
Target Start/End: Original strand, 302680 - 302791
Alignment:
| Q |
9 |
gcttgtaacagagacagttgtgtctttgctccctcgctttactttgccaacttgtttattaacatttttcattataaacgattaggtcatttatgagtta |
108 |
Q |
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| T |
302680 |
gcttgtaacagagactgttgtgtctttgctccctcgctttactttgccaacttgtttattaacatttttcattctaaacgattaggtcatttatgtgtta |
302779 |
T |
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| Q |
109 |
cccgttagaatt |
120 |
Q |
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| T |
302780 |
cccgttagaatt |
302791 |
T |
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