View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5947_low_1 (Length: 532)
Name: NF5947_low_1
Description: NF5947
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5947_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 174; Significance: 2e-93; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 151 - 332
Target Start/End: Complemental strand, 43903265 - 43903084
Alignment:
| Q |
151 |
actaaaaagcacgagttcgttcatgcttgatttcaggttatcatcattctaatgtttggttagagtgagtgggggcatgtcaatttgtaacatgatggat |
250 |
Q |
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| T |
43903265 |
actaaaaagcacgagttcgttcatgcttgatttcaggttatcatcattataatgtttggttagagtgagtgggggcacgtcaatttgtaacatgatggat |
43903166 |
T |
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| Q |
251 |
gacttgttcctagttttgtatccttttagccgaaaatatcgctcactagtatatatgtctaaattatcattttattttaggt |
332 |
Q |
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| T |
43903165 |
gacttgttcctagttttgtatccttttagccgaaaatatcgctcactagtatatatgtctaaattatcattttattttaggt |
43903084 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 74 - 146
Target Start/End: Complemental strand, 43903383 - 43903311
Alignment:
| Q |
74 |
ccataactttgtggtgatcaatgtaatgattatcatttgaggagaattttcttatgcttttttattttgcaaa |
146 |
Q |
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| T |
43903383 |
ccataactttatgatcatcaatgtaatgattatcatttgaggagaattttcttatgcttttttattttgcaaa |
43903311 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 400 - 466
Target Start/End: Complemental strand, 43902811 - 43902740
Alignment:
| Q |
400 |
atgtaatgtatgcgcaacattttatcatctcttt-----gcatctactttaacttaatttaaagtttttaaa |
466 |
Q |
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| T |
43902811 |
atgtaatgtatgtgcaacattttatcatctctttaatttgcatctactttaacttaatttaaagtttttaaa |
43902740 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 359 - 396
Target Start/End: Complemental strand, 43902998 - 43902961
Alignment:
| Q |
359 |
gtcgtgtagatcatttcagtttaagtaatcatactaga |
396 |
Q |
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| T |
43902998 |
gtcgtgtagatcatttcagtttaagtaatcatattaga |
43902961 |
T |
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