View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5948-Insertion-1 (Length: 935)
Name: NF5948-Insertion-1
Description: NF5948
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5948-Insertion-1 |
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Alignment Details
Target: chr4 (Bit Score: 639; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 639; E-Value: 0
Query Start/End: Original strand, 8 - 701
Target Start/End: Complemental strand, 46180848 - 46180161
Alignment:
| Q |
8 |
agtatagacacttgagtcagattgaaatcattagattagaagtgtctacgtgtgagtgtcagtgacatgtttgatgtccgtgttggtggcctacggcgac |
107 |
Q |
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| T |
46180848 |
agtatagacacttgagtcagattataatcattagattagaagtgtctacgtgtcagtgtca------tgttggatgtctgtgttggtggcctacggcgac |
46180755 |
T |
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| Q |
108 |
cgacacagaatcaatacaacaacaatgaataagatgcatacactcatacaaacagccaattggataagaaaggtaatgcacctgtggcagttgcaataga |
207 |
Q |
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| T |
46180754 |
cgacacagaatcaatataacaacaatgaaaaagatgcatacactcatacaaacagccaattggatgagaaaggtaatgcacctgtggcagttgcaataga |
46180655 |
T |
|
| Q |
208 |
ataggtctgtccacaaaacttgcatctcctagtctttccatcagcagcagtctcaaagaacttcaaataaacagaagtcatagttttctttcttggtttg |
307 |
Q |
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| T |
46180654 |
ataggtctgtccacaaaacttgcatctcctagtctttccatcagcagcagtctcaaagaacttcaaataaacagaagtcatagttttctttcttggtttg |
46180555 |
T |
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| Q |
308 |
agtggtgaagtaacaggaattggttggttttctgaagaagcaaggccatggccatccatgtttgaaatgagttccaaatccatcatggatttattaatat |
407 |
Q |
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| T |
46180554 |
agtggtgaagtaacaggaattggttggttttctgaagaagcaaggccatggccatccatgtttgaaatgagttccaaatccatcatggatttattaatat |
46180455 |
T |
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| Q |
408 |
tactatgatcttctgctcaaacaaaaaatacacgattattgattcaatagaatttacagatagatataatgttgtaatgaagaatgaataggtaaattaa |
507 |
Q |
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| T |
46180454 |
tactatgatcttctgctcaaacaaaaaatacacgattattgattcaatagaatttacagatagatataatgttgtaatgaagaatgaataggtaaattaa |
46180355 |
T |
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| Q |
508 |
ggtatagtacctttgtaagttctgtagtgattgttgttactattaacaccccagtccatgtaaaaattaaacgcagttttggtgatgaatgagagggaaa |
607 |
Q |
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| T |
46180354 |
ggtatagtacctttgtaagttctgtagtgattgttgttactattaacaccccagtccatgtaaaaattaaacgcagttttggtgatgaatgagagggaaa |
46180255 |
T |
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| Q |
608 |
atggagggagatgaaattgagcgatctgagccgagagagccgcgtcgctgcagatctcgttttttggtaccacggcttcgctcaaactttagaa |
701 |
Q |
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| T |
46180254 |
atggagggagatgaaattgagcgatctgagccgagagagccgcgtcgctgcagatctcgttttttggtaccacggcttcgctcaaactttagaa |
46180161 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 147; E-Value: 5e-77
Query Start/End: Original strand, 728 - 889
Target Start/End: Complemental strand, 46180134 - 46179972
Alignment:
| Q |
728 |
caataaacgtgagtgagtgagtgagtcgaagtcgacccacttgagtttttagccagctttcttctactaagcccaatgttgctttgctttactaagtcag |
827 |
Q |
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| T |
46180134 |
caataaacgtgagtgagtgagtgagtcgaagtcgacccacttgagtttttagccagctttcttctactaagcccaacgttgctttgctttactaagtcgg |
46180035 |
T |
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| Q |
828 |
cttcattttcattttttaaatttggggttatgttatatatcaca-ccccattcctcctttctc |
889 |
Q |
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| T |
46180034 |
cttcattttcattttttaaatttggggttatgttatatatcacacccccattcctcctttctc |
46179972 |
T |
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