View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5948-Insertion-3 (Length: 540)
Name: NF5948-Insertion-3
Description: NF5948
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5948-Insertion-3 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 455; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 455; E-Value: 0
Query Start/End: Original strand, 9 - 540
Target Start/End: Complemental strand, 10227596 - 10227063
Alignment:
| Q |
9 |
aatccaagtgttgaccactagaaagcttagaagaaaatgatgagataatcttcaaggaataaagaatttcatgctcatgtacaaaagaacagattacaca |
108 |
Q |
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| T |
10227596 |
aatccaagtgttgaccactagaaagcttagaagaaaatgatgagata-tcttcaaggaataaagaatttcatgctcatgtacaaaagaacagattacaca |
10227498 |
T |
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| Q |
109 |
cacaatttggatggaaattgttgtctggtttggctaatttgattataagaagtttatcattaacatattgt---aataaacnnnnnnnttctagattttc |
205 |
Q |
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| T |
10227497 |
cacaatttggatggaaattgttgtctggtttggctaatttgattataagaagtttaacattaacatattgttgtaataaacaaaaaatttctagattttc |
10227398 |
T |
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| Q |
206 |
ataccaccggattggccaatccgtaggtgtaaatgcaattttcaagttttttacatctccaaattgaccaattttgacgtctaaaatgtttactcaattt |
305 |
Q |
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| T |
10227397 |
ataccaccggattggccaatccgtaggtgtaaatgcaattttcaagttttttacatctccaaattgaccaattttgacgtctaaaatgtttactcaattt |
10227298 |
T |
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| Q |
306 |
tttcagcccaaaggtgtaaaatgcagnnnnnnnaatttcaatgccttcaaattgacaaattcaagtgtgtaaaatatttagggttcgaaattaattttgc |
405 |
Q |
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| T |
10227297 |
tttcagcccaaaggtgtaaaatgcagtttttttaatttcaatgccttcaaattgacaaattcaagtgtgtaaaatatttggggttcgaaattaattttgc |
10227198 |
T |
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| Q |
406 |
ataatcgagtgcaatttaagggccggtttaaattattttgcatgagtttgagcttctgcaatatgcttttgtgcttctataatatcatcataatggattt |
505 |
Q |
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| T |
10227197 |
ataatcgagtgcaatttaagggccgttttaaattattttgcatgagtttgagcttctgcaatatgcttttgtgcttctataatatcataataatggattt |
10227098 |
T |
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| Q |
506 |
aagagtctgaatattttgatgatctcataatgggt |
540 |
Q |
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| T |
10227097 |
aagagtctgaatattttgatgatctcataatgggt |
10227063 |
T |
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Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 46 - 102
Target Start/End: Complemental strand, 1752070 - 1752015
Alignment:
| Q |
46 |
tgatgagataatcttcaaggaataaagaatttcatgctcatgtacaaaagaacagat |
102 |
Q |
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| T |
1752070 |
tgatgagata-tcttcaaggaacaaagaatttcatcctcatgtacaaatgaacagat |
1752015 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 492 - 539
Target Start/End: Original strand, 14743426 - 14743473
Alignment:
| Q |
492 |
atcataatggatttaagagtctgaatattttgatgatctcataatggg |
539 |
Q |
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| T |
14743426 |
atcatgatgggttcaagagtctgaatattttgatgatctcataatggg |
14743473 |
T |
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