View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5948-Insertion-4 (Length: 387)
Name: NF5948-Insertion-4
Description: NF5948
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5948-Insertion-4 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 377; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 11 - 387
Target Start/End: Complemental strand, 7241219 - 7240843
Alignment:
| Q |
11 |
cacaacaggaacatatggaaaacatcttagaaaagagatttctgaggtagttttcacaatcagcaatatcagagatattttaagacatggtgagaaacac |
110 |
Q |
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| T |
7241219 |
cacaacaggaacatatggaaaacatcttagaaaagagatttctgaggtagttttcacaatcagcaatatcagagatattttaagacatggtgagaaacac |
7241120 |
T |
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| Q |
111 |
cccttgttacagaaactgagcatagaaattttaacaagtcttgcattggaagatgaggcatcagaaaggattggaggtacaggtggagtgcttaaagaat |
210 |
Q |
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| T |
7241119 |
cccttgttacagaaactgagcatagaaattttaacaagtcttgcattggaagatgaggcatcagaaaggattggaggtacaggtggagtgcttaaagaat |
7241020 |
T |
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| Q |
211 |
tgttcaacatatttttcagacaaaacattcctgaaaaccagaaagatgtaacaactgttgctggtgaggccttatcaatgctggcattagaaagcaagag |
310 |
Q |
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| T |
7241019 |
tgttcaacatatttttcagacaaaacattcctgaaaaccagaaagatgtaacaactgttgctggtgaggccttatcaatgctggcattagaaagcaagag |
7240920 |
T |
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| Q |
311 |
caactgtcatcggattttgaagttgagagtgctcgaaaggcttattgaagcattgaaagtaccactgattcgtgtca |
387 |
Q |
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| T |
7240919 |
caactgtcatcggattttgaagttgagagtgctcgaaaggcttattgaagcattgaaagtaccactgattcgtgtca |
7240843 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 59; Significance: 7e-25; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 58 - 228
Target Start/End: Original strand, 48732749 - 48732919
Alignment:
| Q |
58 |
tagttttcacaatcagcaatatcagagatattttaagacatggtgagaaacaccccttgttacagaaactgagcatagaaattttaacaagtcttgcatt |
157 |
Q |
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| T |
48732749 |
tagtgttcactatcagtaatattagagatattttaaagcatggagaaagacatccacttctacagaaactgagcatagagattttaacaaacctagcatt |
48732848 |
T |
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| Q |
158 |
ggaagatgaggcatcagaaaggattggaggtacaggtggagtgcttaaagaattgttcaacatatttttca |
228 |
Q |
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| T |
48732849 |
agatgatgatgcaacagagagaattggtggtacaggtggaatgcttcaagaattgttcaacatacttttca |
48732919 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 276 - 369
Target Start/End: Original strand, 48732970 - 48733063
Alignment:
| Q |
276 |
gaggccttatcaatgctggcattagaaagcaagagcaactgtcatcggattttgaagttgagagtgctcgaaaggcttattgaagcattgaaag |
369 |
Q |
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| T |
48732970 |
gaggccctagcgatgttggcattagaaagcaagagtaactgtcattgaattttgaagctgaaattacttggaaggcttgtagaatcattgaaag |
48733063 |
T |
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