View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5948-Insertion-6 (Length: 953)
Name: NF5948-Insertion-6
Description: NF5948
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5948-Insertion-6 |
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| [»] chr6 (3 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 791; Significance: 0; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 791; E-Value: 0
Query Start/End: Original strand, 8 - 953
Target Start/End: Complemental strand, 7180552 - 7179595
Alignment:
| Q |
8 |
aaggataatgagcttaattagattctcaacattgaacaggtctttttgcaatccgatgtcgaagaggtagcaataagaatgaaagaacaatttttaagat |
107 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7180552 |
aaggataatgagcttaattagattctcaacattgaacaggtctttttgcaatccgatgtcgaagaggtagcaataagaatgaaagaacaatttttaagat |
7180453 |
T |
|
| Q |
108 |
attgcaagggtaagcttgttttggagaatggccaaactgattggcttgatgaaaacccatttggaattaggtcagattgggaaaaacatgttttagagcg |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7180452 |
attgcaagggtaagcttgttttggagaatggccaaactgattggcttgatgaaaacccatttggaattaggtcagattgggaaaaacatgttttagagcg |
7180353 |
T |
|
| Q |
208 |
tggggcacctatgtaccgaatgatgttttctaagttgtctgaaataagcgaagtttcatgttcaaatgatgtagttcaaaaagttgtttaattcatcaac |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7180352 |
tggggcacctatgtaccgaatgatgttttctaagttgtctgaaataagtgaagtttcatgttcaaatgatgtagttcaaaaagttgtttaattcatcaac |
7180253 |
T |
|
| Q |
308 |
cgttcaaaggtttacttcaagtttgttcatgaaccaatcaaattgaactatacatagctccagttcagctaattaatttaacaagctcaatttccagctt |
407 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7180252 |
cgttcaaaggtttacttcaagtttgttcatgaaccaatcaaattgaactatacatagctccagttcagctaattaatttaacaagctcaatttccagctt |
7180153 |
T |
|
| Q |
408 |
aagtttagatcattttgttcatgaatcaagtt-----aaaagaaaaatgacaaattgaggtctgaactaac--agttggatcgattcattgtaagtctta |
500 |
Q |
| |
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|||||||||||||||||||||||||||||||| |||| ||||||| || || ||||||||||||||| ||||||||||||||||||| ||||||| |
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| T |
7180152 |
aagtttagatcattttgttcatgaatcaagttcaaaaaaaaaaaaaatgtcagatcgaggtctgaactaactgagttggatcgattcattgtcagtctta |
7180053 |
T |
|
| Q |
501 |
gggttattgata---nnnnnnngcagaatctcatagtcaatccatgccaagttgacatagacatgtagttgtgttgtaggtaacattagctggttcagnn |
597 |
Q |
| |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7180052 |
gggttattgatattttttttttgcagaatctcatagtcaatccatgccaagttgacatagacatgtagttgtgttgtaggtaacattagctggttcactt |
7179953 |
T |
|
| Q |
598 |
nnnnnnatgaactttgaagacatggattagttaattcatctgaagaagtattcatccagctagcattggagagctgaacatcctttaacaataagggatg |
697 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7179952 |
ttttttatgaactttgaagacatggattagttaattcatctgaagaagtattcatccagctagcattggagagctgaacatcctttaacaataagggatg |
7179853 |
T |
|
| Q |
698 |
ccaaatttaatgtgcaataatgtgcatgtgatctctaaacttcaagatttctcctccaaggatgcatgacaatttgacaaagtatgccaatgaaatcaaa |
797 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7179852 |
ccaaatttaatgtgcaataatgtgcatgtgatctctaaacttaaagatttctcctccaaggatgcatgacaatttgacaaagtatgccaatgaaatcaaa |
7179753 |
T |
|
| Q |
798 |
gctgagctacaagagtcaaagatgactgaagttagctttgtatatannnnnnnagaaaggcctagaaattcatagtttctat-aatggtactattaattt |
896 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||| ||||||| |
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| T |
7179752 |
gctgagctacaagagtcaaagatgactgaagttagctttgtatatatttttttagaaaggcctagaaattcatagtttctataaatggtactgttaattt |
7179653 |
T |
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| Q |
897 |
tggtt-agatcatacaaattcatatatggaacgccataattaacattttgagttgtca |
953 |
Q |
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||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
7179652 |
tggttaagatcatacaaattcatatatggaacgccatatttaacattttgagttgtca |
7179595 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 618 - 821
Target Start/End: Complemental strand, 7165952 - 7165752
Alignment:
| Q |
618 |
catggattagttaattcatctgaagaagtattca-tccagctagcattggagagctgaacatcctttaacaataagggatgccaaatttaatgtgcaata |
716 |
Q |
| |
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||||||||| || ||||||||||| ||||||||| || | ||||||||||| | |||||||||||| || || ||||| |||||| |||||||||| |
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| T |
7165952 |
catggattacttgattcatctgaataagtattcaatctaaatagcattggagggttgaacatccttttacgatgtgggataccaaatataatgtgcaact |
7165853 |
T |
|
| Q |
717 |
atgtgcatgtgatctctaaacttcaagatttctcctccaaggatgcatgacaatttgacaaagtatgccaatgaaatcaaagctgagctacaagagtcaa |
816 |
Q |
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|| |||||||| ||||| |||| | |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
7165852 |
at---catgtgattcctaaatttcatg-tttctcctccaatgatgcatgacaatttgacaaagtatgccaatgaaatcaaagctgagctacaagagtcga |
7165757 |
T |
|
| Q |
817 |
agatg |
821 |
Q |
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||||| |
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| T |
7165756 |
agatg |
7165752 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 332 - 389
Target Start/End: Original strand, 18099782 - 18099839
Alignment:
| Q |
332 |
gttcatgaaccaatcaaattgaactatacatagctccagttcagctaattaatttaac |
389 |
Q |
| |
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||||||||||||| | ||||||||||| |||||||| |||||| || ||| ||||||| |
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| T |
18099782 |
gttcatgaaccaaacgaattgaactatgcatagctcaagttcatctcatttatttaac |
18099839 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.000000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 334 - 439
Target Start/End: Original strand, 52813569 - 52813674
Alignment:
| Q |
334 |
tcatgaaccaatcaaattgaactatacatagctccagttcagctaattaatttaacaagctcaatttccagcttaagtttagatcattttgttcatgaat |
433 |
Q |
| |
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||||||||||| | ||| |||||||| | ||||| ||||||||| ||| |||||| | || ||||| ||||||||||| || || ||| ||||||||| |
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| T |
52813569 |
tcatgaaccaaccgaatcgaactatataaagctcaagttcagctcatttgtttaacgaacttaattttcagcttaagttcagctcgtttggttcatgaac |
52813668 |
T |
|
| Q |
434 |
caagtt |
439 |
Q |
| |
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|||||| |
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| T |
52813669 |
caagtt |
52813674 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 334 - 439
Target Start/End: Complemental strand, 11055398 - 11055293
Alignment:
| Q |
334 |
tcatgaaccaatcaaattgaactatacatagctccagttcagctaattaatttaacaagctcaatttccagcttaagtttagatcattttgttcatgaat |
433 |
Q |
| |
|
||||||||||||| | | |||||||| | ||||| ||||| ||| ||| ||||||| | || ||||| | ||| ||||| || |||||| ||||||||| |
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| T |
11055398 |
tcatgaaccaatcgagtcgaactatatacagctcaagttcggctcatttatttaacgaacttaattttccgctcaagttcagctcatttggttcatgaac |
11055299 |
T |
|
| Q |
434 |
caagtt |
439 |
Q |
| |
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|||||| |
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| T |
11055298 |
caagtt |
11055293 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 332 - 391
Target Start/End: Original strand, 36523717 - 36523776
Alignment:
| Q |
332 |
gttcatgaaccaatcaaattgaactatacatagctccagttcagctaattaatttaacaa |
391 |
Q |
| |
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||||||||||||| | ||| ||||||||||||||| ||||||||| ||| ||||||||| |
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| T |
36523717 |
gttcatgaaccaaacgaatcaaactatacatagctcaagttcagctcatttatttaacaa |
36523776 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000003; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 334 - 439
Target Start/End: Complemental strand, 9505293 - 9505188
Alignment:
| Q |
334 |
tcatgaaccaatcaaattgaactatacatagctccagttcagctaattaatttaacaagctcaatttccagcttaagtttagatcattttgttcatgaat |
433 |
Q |
| |
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||||||||||| | || |||||||| ||| ||| ||||||||| ||| ||||||| | || ||||| ||||| ||||| | |||||| ||||||||| |
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| T |
9505293 |
tcatgaaccaaccgaaccgaactatatatatctcaagttcagctcatttatttaacgaacttaattttcagctcaagttcaactcatttggttcatgaac |
9505194 |
T |
|
| Q |
434 |
caagtt |
439 |
Q |
| |
|
|||||| |
|
|
| T |
9505193 |
caagtt |
9505188 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 334 - 439
Target Start/End: Original strand, 52934780 - 52934885
Alignment:
| Q |
334 |
tcatgaaccaatcaaattgaactatacatagctccagttcagctaattaatttaacaagctcaatttccagcttaagtttagatcattttgttcatgaat |
433 |
Q |
| |
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||||||||||||| | | |||||||| |||| || ||||| ||| ||| ||||||| | || ||||| | ||| ||||| || |||||| ||||||||| |
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| T |
52934780 |
tcatgaaccaatcgagtcgaactatatatagatcaagttcggctcatttatttaacgaacttaattttctgctcaagttcagctcatttggttcatgaac |
52934879 |
T |
|
| Q |
434 |
caagtt |
439 |
Q |
| |
|
|||||| |
|
|
| T |
52934880 |
caagtt |
52934885 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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