View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5948_high_2 (Length: 566)
Name: NF5948_high_2
Description: NF5948
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5948_high_2 |
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Alignment Details
Target: chr2 (Bit Score: 462; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 462; E-Value: 0
Query Start/End: Original strand, 18 - 556
Target Start/End: Complemental strand, 10227596 - 10227056
Alignment:
| Q |
18 |
aatccaagtgttgaccactagaaagcttagaagaaaatgatgagataatcttcaaggaataaagaatttcatgctcatgtacaaaagaacagattacaca |
117 |
Q |
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| T |
10227596 |
aatccaagtgttgaccactagaaagcttagaagaaaatgatgagata-tcttcaaggaataaagaatttcatgctcatgtacaaaagaacagattacaca |
10227498 |
T |
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| Q |
118 |
cacaatttggatggaaattgttgtctggtttggctaatttgattataagaagtttatcattaacatattgt---aataaacnnnnnnnttctagattttc |
214 |
Q |
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| T |
10227497 |
cacaatttggatggaaattgttgtctggtttggctaatttgattataagaagtttaacattaacatattgttgtaataaacaaaaaatttctagattttc |
10227398 |
T |
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| Q |
215 |
ataccaccggattggccaatccgtaggtgtaaatgcaattttcaagttttttacatctccaaattgaccaattttgacgtctaaaatgtttactcaattt |
314 |
Q |
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| T |
10227397 |
ataccaccggattggccaatccgtaggtgtaaatgcaattttcaagttttttacatctccaaattgaccaattttgacgtctaaaatgtttactcaattt |
10227298 |
T |
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| Q |
315 |
tttcagcccaaaggtgtaaaatgcagnnnnnnnaatttcaatgccttcaaattgacaaattcaagtgtgtaaaatatttagggttcgaaattaattttgc |
414 |
Q |
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| T |
10227297 |
tttcagcccaaaggtgtaaaatgcagtttttttaatttcaatgccttcaaattgacaaattcaagtgtgtaaaatatttggggttcgaaattaattttgc |
10227198 |
T |
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| Q |
415 |
ataatcgagtgcaatttaagggccggtttaaattattttgcatgagtttgagcttctgcaatatgcttttgtgcttctataatatcatcataatggattt |
514 |
Q |
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| T |
10227197 |
ataatcgagtgcaatttaagggccgttttaaattattttgcatgagtttgagcttctgcaatatgcttttgtgcttctataatatcataataatggattt |
10227098 |
T |
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| Q |
515 |
aagagtctgaatattttgatgatctcataatgggtacctatg |
556 |
Q |
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| T |
10227097 |
aagagtctgaatattttgatgatctcataatgggtacctatg |
10227056 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 501 - 554
Target Start/End: Original strand, 14743426 - 14743479
Alignment:
| Q |
501 |
atcataatggatttaagagtctgaatattttgatgatctcataatgggtaccta |
554 |
Q |
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| T |
14743426 |
atcatgatgggttcaagagtctgaatattttgatgatctcataatgggaaccta |
14743479 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 55 - 111
Target Start/End: Complemental strand, 1752070 - 1752015
Alignment:
| Q |
55 |
tgatgagataatcttcaaggaataaagaatttcatgctcatgtacaaaagaacagat |
111 |
Q |
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| T |
1752070 |
tgatgagata-tcttcaaggaacaaagaatttcatcctcatgtacaaatgaacagat |
1752015 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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