View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5948_low_1 (Length: 646)
Name: NF5948_low_1
Description: NF5948
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5948_low_1 |
 | |
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Alignment Details
Target: chr7 (Bit Score: 516; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 516; E-Value: 0
Query Start/End: Original strand, 1 - 630
Target Start/End: Complemental strand, 32244452 - 32243821
Alignment:
| Q |
1 |
aacggacgaaatacaaacaaatcacattcaccttcaatttcgcaatcgaaatccaagacatnnnnnnnncgtacaaagcagttaaaaaagagaattacat |
100 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||| || |
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| T |
32244452 |
aacggacgaaatacaaacaaatcacattcaccttcaatttcgcaatcgaaatccaagacataaaaaaaacgtacaaagcagttaaaaaagaggattatat |
32244353 |
T |
|
| Q |
101 |
taatatgttaagaataaactattgctgtgtcatgtcaggtaccacataaattttagaattccagttaaaatagagtactccattaaaaagttactgcata |
200 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32244352 |
taatatgttaagaataaactattgctgtgtcatgtcgggtaccacataaattttagaattccagttaaaatagagtactccattaaaaagttactgcata |
32244253 |
T |
|
| Q |
201 |
aatttgataatgtctattatatttgcaaggattaatttgatatgtctactactattcaatataccttttttaatacataactgttttaggtgaaatccaa |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32244252 |
aatttgataatgtctattatatttgcaaggattaatttgatatgtctactactattcaatataccttttttaatacataactgttttaggtgaaatccaa |
32244153 |
T |
|
| Q |
301 |
actttgctcgttaaggttgcagagtcaagctctaactattaagttgacatctcccatacatattagcaagagaatgactacggttcagtcacttttgacc |
400 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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|
| T |
32244152 |
actttgatcgttaaggttgcagagtcaagctctaactattaagttgacatctcccatacatattagcaagagaatgactacggttcagtcacttatgacc |
32244053 |
T |
|
| Q |
401 |
ttagaaagtttgaggtcaattcttgag-ctaacttgacatttaatgaagaaatatnnnnnnnnnttgtaacggattcacgataaaatcaggaaaaaataa |
499 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
32244052 |
ttagaaagtttgaggtcaattcttgagcctaacttgacatttaatgaagaaatataaaaaaaaattgtaacggattcacgataaaatcaggaaaaaataa |
32243953 |
T |
|
| Q |
500 |
tattaaaatgcaattttaggagtcacaaaaagacaactatatgtattttaaattattcttactgttccttc-nnnnnnnttaatgttttaacttattttt |
598 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||| |
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| T |
32243952 |
tattaaaatgcaattttaggagtcataaaaagacaactatatgtattttaaattattcttactgttccttcaaaaaaaattaatgttttaactgattttt |
32243853 |
T |
|
| Q |
599 |
aacaaaatcgaggcataaaccatatgaattct |
630 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
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| T |
32243852 |
aacaaaatcgaggcataaaccatatgaattct |
32243821 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 1 - 527
Target Start/End: Complemental strand, 46733847 - 46733308
Alignment:
| Q |
1 |
aacggacgaaatacaaacaaatcacattcaccttcaatttcgcaatcgaaatccaagacatnnnnnnnn----cgtacaaagcagttaaaaaagagaatt |
96 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||| | | |
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| T |
46733847 |
aacggaagaaatacaaacaaatcacattcaccttcaattccgcaatcgaaatccaagacataaaaaaaaataacgtacaaagcagttaaaaaagaggact |
46733748 |
T |
|
| Q |
97 |
acattaatatgttaagaataaactattgctgtgtcatgtcaggtaccacataaattttagaattc-cagttaaaatagagtactccattaaaaagttact |
195 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||| |||| |||||||||||||||||||||| | |||||||||||||||| |||||||||||| || |
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|
| T |
46733747 |
acattaatatgttaagaataaactattgttgtgtactgtcgggtaccacataaattttagaataagcggttaaaatagagtactgcattaaaaagttcct |
46733648 |
T |
|
| Q |
196 |
gcataaatttgataatgtctattatatttgcaa---------ggattaatttgatatgtctactactattcaatataccttttttaatacataactgttt |
286 |
Q |
| |
|
|||||||||||||| ||||||| |||||||||| |||||||||||||||||| |||| |||||||||||||||| |||||||||| |||| |
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| T |
46733647 |
gcataaatttgatagtgtctatcatatttgcaatgttcgcacggattaatttgatatgtcgacta---ttcaatatacctttttcaatacataaccgttt |
46733551 |
T |
|
| Q |
287 |
taggtgaaatccaaactttgctcgttaaggttgcagagtcaagctctaactattaagttgacatctcccatacatattagcaagagaatgactacggttc |
386 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||| |
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|
| T |
46733550 |
aaggtgaaatccaaactttgctcgttaaggttgcagagtcaagctctaactattaagctgacatctcccagacatattagcaagagaatgactacggttc |
46733451 |
T |
|
| Q |
387 |
agtcacttttgaccttagaaagtttgaggtcaattcttgag-ctaacttgacatttaatgaagaaatat-nnnnnnnnnttgtaacggattcacgataaa |
484 |
Q |
| |
|
|||||||| |||||||||| ||||||||| ||||||||| |||||||||||||||| |||||||| | ||||||||||||||| ||||| |
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| T |
46733450 |
agtcacttacaaccttagaaaatttgaggtctattcttgagcctaacttgacatttaacgaagaaatgtaaagaaaaaattgtaacggattcaccataaa |
46733351 |
T |
|
| Q |
485 |
atcaggaaaaaataatattaaaatgcaattttaggagtcacaa |
527 |
Q |
| |
|
||| | |||||||||||| ||| |||||||||||||||||||| |
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|
| T |
46733350 |
atcggaaaaaaataatataaaagtgcaattttaggagtcacaa |
46733308 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 246; Significance: 1e-136; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 1 - 547
Target Start/End: Original strand, 30703480 - 30704040
Alignment:
| Q |
1 |
aacggacgaaatacaaacaaatcacattcaccttcaatttcgcaatcgaaatccaagacatnnnnnnnn------cgtacaaagcagttaaaaaagagaa |
94 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||| | |
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|
| T |
30703480 |
aacggaagaaatacaaacaaatcacattcaccttcaattccgcaatcgaaatccaagacataaaaaaataaataacgtacaaagcagttaaaaaagagga |
30703579 |
T |
|
| Q |
95 |
ttacattaatatgttaagaataaactattgctgtgtcatgtcaggtaccacataaattttagaattc-cagttaaaatagagtactccattaaaaagtta |
193 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||| |||| |||||||||||||||||||||| | ||||||||| |||| | ||||| |||||| |
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| T |
30703580 |
ctacattaatatgttaagaataaactattgctctgtactgtcgggtaccacataaattttagaataagcggttaaaataaagtattacattagaaagttc |
30703679 |
T |
|
| Q |
194 |
ctgcataaatttgataatgtctattatatttgcaagg---------attaatttgatatgtctactactattcaatataccttttttaatacataactgt |
284 |
Q |
| |
|
||||||||||||||| |||||| |||||||||| | |||||||||||||||| |||||||||||||||||||| |||||||||| || |
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|
| T |
30703680 |
ttgcataaatttgatagcgtctatcatatttgcaatgttcgcacagattaatttgatatgtc----actattcaatatacctttttcaatacataaccgt |
30703775 |
T |
|
| Q |
285 |
tttaggtgaaatccaaactttgctcgttaaggttgcagagtcaagctctaactattaagttgacatctcccatacatattagcaagagaatgactacggt |
384 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||| |||||| |||||||||||||||||||| |
|
|
| T |
30703776 |
tttaggtgaaatccaaactttgcttgttaaggttgcagagtcaagctctaactattaagctgacatctcccaaacatatcagcaagagaatgactacggt |
30703875 |
T |
|
| Q |
385 |
tcagtcacttttgaccttagaaagtttgaggtcaattcttgag-ctaacttgacatttaatgaagaaatat-nnnnnnnnnttgtaacggattcacgata |
482 |
Q |
| |
|
|||||||||| |||||||||||||||||||| ||||||| | ||||||||| |||||| |||||||| | ||||||||||||||| ||| |
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|
| T |
30703876 |
tcagtcacttacaaccttagaaagtttgaggtctattcttgggcctaacttgatatttaacgaagaaatgtaaagaaaaaattgtaacggattcaccata |
30703975 |
T |
|
| Q |
483 |
aaatcaggaaaaaataatattaaaatgcaattttaggagtcacaaaaagacaactatatgtattt |
547 |
Q |
| |
|
||||| |||||||||||| ||| ||||||||||||||||||||||||||| ||||||||||| |
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|
| T |
30703976 |
aaatcgaaaaaaaataatataaaagtgcaattttaggagtcacaaaaagacagttatatgtattt |
30704040 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 593 - 630
Target Start/End: Original strand, 30704146 - 30704183
Alignment:
| Q |
593 |
atttttaacaaaatcgaggcataaaccatatgaattct |
630 |
Q |
| |
|
||||||||||||||||| |||||| ||||||||||||| |
|
|
| T |
30704146 |
atttttaacaaaatcgaagcataatccatatgaattct |
30704183 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 9 - 41
Target Start/End: Original strand, 9815871 - 9815903
Alignment:
| Q |
9 |
aaatacaaacaaatcacattcaccttcaatttc |
41 |
Q |
| |
|
|||||||||||||||||||||| |||||||||| |
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|
| T |
9815871 |
aaatacaaacaaatcacattcatcttcaatttc |
9815903 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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