View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5948_low_3 (Length: 331)
Name: NF5948_low_3
Description: NF5948
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5948_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 231; Significance: 1e-127; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 25 - 316
Target Start/End: Complemental strand, 27194878 - 27194585
Alignment:
| Q |
25 |
gagacaaaaacaacctcaaagtcaccctttggagagagttcatcgtagacctccaccaacgttggagtgaatcctcgacacggaccacaccatgatgctg |
124 |
Q |
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| T |
27194878 |
gagacaaaaacaacctcaaattcaccatttggagagagttcatcgtacacctccaccaactttggagtgaatcctcgacacggaccacaccatgatgctg |
27194779 |
T |
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| Q |
125 |
aaaaatagaaaccaagtttctttcccttcaaactatcaattttaacctgtgaatttcaaaatataagaaatagcaccacaatattccatcagtataagta |
224 |
Q |
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| T |
27194778 |
aaaaatagaaaccaagtttctttcccttcaagctatcaattttaacctgtgaatttcaaaatataagaaatagcaccacaatattccatcggtataagta |
27194679 |
T |
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| Q |
225 |
caaataaaactaacacttcaaacaac--tcataaacgacaatgtccaataacaaaaacactggaataaaccacaggaaaacttagtcaactctg |
316 |
Q |
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| T |
27194678 |
caaataaaaccaccacttcaaataactgtcataaaccacaatgtccaataagaaaaacactagaataaaccactggaaaacttagtcaactctg |
27194585 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 25 - 190
Target Start/End: Complemental strand, 27210107 - 27209942
Alignment:
| Q |
25 |
gagacaaaaacaacctcaaagtcaccctttggagagagttcatcgtagacctccaccaacgttggagtgaatcctcgacacggaccacaccatgatgctg |
124 |
Q |
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|||||| |||||||||||||||||||||| ||||||||||||| ||| |||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
27210107 |
gagacataaacaacctcaaagtcacccttgggagagagttcattgtacacctccaccaacgttggagtgaatgatcgacacggaccacaccatgatgctg |
27210008 |
T |
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| Q |
125 |
aaaaatagaaaccaagtttctttcccttcaaactatcaattttaacctgtgaatttcaaaatataa |
190 |
Q |
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||||||| ||||||||||||||||||||||| ||||||||||| |||||||||| |||| |||||| |
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| T |
27210007 |
aaaaataaaaaccaagtttctttcccttcaagctatcaatttttacctgtgaatctcaagatataa |
27209942 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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