View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5949-Insertion-1 (Length: 925)

Name: NF5949-Insertion-1
Description: NF5949
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5949-Insertion-1
NF5949-Insertion-1
[»] chr6 (9 HSPs)
chr6 (9-590)||(21263563-21264148)
chr6 (615-925)||(21264149-21264448)
chr6 (629-718)||(21255712-21255801)
chr6 (343-493)||(21297756-21297905)
chr6 (348-472)||(21109097-21109214)
chr6 (547-603)||(21109279-21109335)
chr6 (387-463)||(21177711-21177788)
chr6 (407-468)||(31527844-31527905)
chr6 (429-473)||(33722786-33722830)
[»] chr8 (6 HSPs)
chr8 (373-601)||(15124317-15124539)
chr8 (428-601)||(5305068-5305235)
chr8 (407-468)||(5312407-5312468)
chr8 (410-601)||(5284350-5284535)
chr8 (373-537)||(14951128-14951292)
chr8 (374-468)||(5291809-5291903)
[»] scaffold0060 (3 HSPs)
scaffold0060 (27-124)||(23469-23567)
scaffold0060 (9-48)||(10411-10450)
scaffold0060 (65-94)||(14163-14192)
[»] scaffold0272 (1 HSPs)
scaffold0272 (348-422)||(19888-19962)
[»] scaffold0016 (3 HSPs)
scaffold0016 (541-592)||(39626-39677)
scaffold0016 (348-422)||(39775-39849)
scaffold0016 (541-592)||(61187-61238)
[»] chr7 (3 HSPs)
chr7 (342-436)||(11831658-11831754)
chr7 (823-886)||(883864-883929)
chr7 (823-886)||(1243193-1243258)
[»] chr5 (2 HSPs)
chr5 (63-119)||(21634022-21634078)
chr5 (63-119)||(21642269-21642325)
[»] scaffold0719 (2 HSPs)
scaffold0719 (348-422)||(5815-5889)
scaffold0719 (543-592)||(5989-6038)


Alignment Details
Target: chr6 (Bit Score: 449; Significance: 0; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 449; E-Value: 0
Query Start/End: Original strand, 9 - 590
Target Start/End: Original strand, 21263563 - 21264148
Alignment:
Q  9 ctattctttaaaactataaacttgttcaattttggattaagctaggcttgtttcatagaataattgttcaattttggatttagaacaaaatttccaagag 108  Q
    ||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||| |||||||| ||||||||||||| |||||||||||    
T  21263563 ctattctttaaaactataaacttgttcaattttcgattaagctgggcttgtttcatagaataatttttcaatttgggatttagaacaagatttccaagag 21263662  T
Q  109 gaaattgaacatcaattctacgagtaattttgtatgaccataagttaaaacacattatttaaatacacaaaataaattatggataaggaca-aatcaaat 207  Q
    ||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||| || || | ||||||||    
T  21263663 gaaattgaacatcaattctacgagtaattttgtatgatcataagtttaaacacattatttaaatacacaaaataaattatggacaaagaaacaatcaaat 21263762  T
Q  208 gtannnnnnnn---aaatcgttaagtaatgtatatttgatcaactacgtcaaatcaaataagattttagagaaacgcaacacttgtgccagatagaaact 304  Q
    |||           ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  21263763 gtatttttttttttaaatcgttaagtaatgtatatttgagcaactacgtcaaatcaaataagattttagagaaacgcaacacttttgccagatagaaact 21263862  T
Q  305 agaaagggcattagatcaagtaatataaccttgcgttagtgcgtttcaattgggagcagatacctataagttctatttgagttagtcaacaataca-tag 403  Q
    ||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||| | |||    
T  21263863 agaaagggcattagatcaagtaacataaccttgtgttagtgcgtttcaattgggagcata-acctataagttctatttgagttagtcaacaatagaatag 21263961  T
Q  404 aagattagaggtgaaactacaatagaaatagttatgattaattcataaaatgctattaatatgttggattatagctaagttctaactacaaacaaaagat 503  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21263962 aagattagaggtgaaactacaatagaaatagttctgattaattcataaaatgctattaatatgttggattatagctaagttctaactacaaacaaaagat 21264061  T
Q  504 ataaactcttagtattgttcaaagtcctctctctaactctaacaagttattcccaagcatgaacaaattttttacaagccatgtttg 590  Q
    | |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  21264062 acaaactcttagtattgttcaaagtcctctctctaactctaacaagttattcccaatcatgaacaaattttttacaagccatgtttg 21264148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 169; E-Value: 4e-90
Query Start/End: Original strand, 615 - 925
Target Start/End: Original strand, 21264149 - 21264448
Alignment:
Q  615 aaattcgagacttagtaatctcattggagttgctattattgagtaatgcatttgtagttctaaaattccataagtttgtgcttagtaaattgaaaattga 714  Q
    |||||| |||||| |||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||    
T  21264149 aaattccagactt-gtaatctcattggagttgctattattaagtaatgcatttgtatttctaaaattccataagtttgtgcttagtaaattgaaaactga 21264247  T
Q  715 tccaaaggaggatcaatcctaaaattgaaataaaaagtgacaagctataaacttatacaattaacttatgaatttagtcctacaatcttaatcg-nnnnn 813  Q
    ||||||| || |||| |||||||||| ||||||||||||||||||||||             |||||||||||||||||||||||||||||| |          
T  21264248 tccaaagaagcatcagtcctaaaattaaaataaaaagtgacaagctata-------------aacttatgaatttagtcctacaatcttaattgaaaaaa 21264334  T
Q  814 nntaactattaattaaatgcattttttacgtcattttatatttataaaccacatcaaccgttaattttgtc-aacactaga-aatcaatcaattaactta 911  Q
      ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||| ||||||||| |||||||||| |||||||    
T  21264335 aataactattaattaaatgcattttttacgtcattttatatttataaactacatcaaccattaattttgtcaaacactagagaatcaatcaactaactta 21264434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 629 - 718
Target Start/End: Original strand, 21255712 - 21255801
Alignment:
Q  629 gtaatctcattggagttgctattattgagtaatgcatttgtagttctaaaattccataagtttgtgcttagtaaattgaaaattgatcca 718  Q
    |||||||||||||||||||||||||||| ||||||||||||  |||||||||| ||| ||||||| ||||||||||| |||| |||||||    
T  21255712 gtaatctcattggagttgctattattgaataatgcatttgtgtttctaaaattgcattagtttgtacttagtaaattaaaaactgatcca 21255801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 343 - 493
Target Start/End: Original strand, 21297756 - 21297905
Alignment:
Q  343 gtgcgtttcaattgggagcagatacctataagttctatttgagttagtcaacaataca-tagaagattagaggtgaaactacaatagaaatagttatgat 441  Q
    |||| ||| |||||| |||| |||| |||||||||||||||||| | | ||||||| | || || |||||| |||||||||||| ||| |||||| ||||    
T  21297756 gtgcctttaaattggaagcatatac-tataagttctatttgagtaatt-aacaatagagtataatattagatgtgaaactacaacagagatagttctgat 21297853  T
Q  442 taattcataaaatgctattaatatgttggattatagctaagttctaactaca 493  Q
    | || |||||| ||||||||||||||||||||||||||||  ||||||||||    
T  21297854 ttatgcataaactgctattaatatgttggattatagctaaactctaactaca 21297905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 348 - 472
Target Start/End: Original strand, 21109097 - 21109214
Alignment:
Q  348 tttcaattgggagcagatacctataagttctatttgagttagtcaacaatacatagaagattagaggtgaaactacaatagaaatagttatgattaattc 447  Q
    ||||||||||||||| ||||| |||||||||||||| |||||| |||      || |  | ||||||||||| ||||  |||| || ||||||||||| |    
T  21109097 tttcaattgggagcatatacccataagttctatttg-gttagttaac------tacagtaatagaggtgaaattacagcagaagtaattatgattaatgc 21109189  T
Q  448 ataaaatgctattaatatgttggat 472  Q
    |||||||||||||||||||||||||    
T  21109190 ataaaatgctattaatatgttggat 21109214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 547 - 603
Target Start/End: Original strand, 21109279 - 21109335
Alignment:
Q  547 aagttattcccaagcatgaacaaattttttacaagccatgtttgcttcatcttcaaa 603  Q
    |||| ||||||||||| |||||||||||| | ||||| |||||||||||||||||||    
T  21109279 aagtgattcccaagcaagaacaaatttttgataagccctgtttgcttcatcttcaaa 21109335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 387 - 463
Target Start/End: Original strand, 21177711 - 21177788
Alignment:
Q  387 tagtcaacaata-catagaagattagaggtgaaactacaatagaaatagttatgattaattcataaaatgctattaat 463  Q
    |||| ||||||| ||||||  |||||||||||||||| || ||| |||||| |||||||| |||||||||| ||||||    
T  21177711 tagttaacaatagcatagagtattagaggtgaaactaaaacagatatagttctgattaatgcataaaatgccattaat 21177788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 407 - 468
Target Start/End: Original strand, 31527844 - 31527905
Alignment:
Q  407 attagaggtgaaactacaatagaaatagttatgattaattcataaaatgctattaatatgtt 468  Q
    ||||||||| ||||||||| |||||||||| ||| || | |||| |||||||||||||||||    
T  31527844 attagaggtaaaactacaacagaaatagttctgagtagtgcatagaatgctattaatatgtt 31527905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 429 - 473
Target Start/End: Original strand, 33722786 - 33722830
Alignment:
Q  429 aaatagttatgattaattcataaaatgctattaatatgttggatt 473  Q
    |||||||| |||||||| ||||||||| |||||||||||||||||    
T  33722786 aaatagttctgattaatgcataaaatgatattaatatgttggatt 33722830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 83; Significance: 8e-39; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 83; E-Value: 8e-39
Query Start/End: Original strand, 373 - 601
Target Start/End: Complemental strand, 15124539 - 15124317
Alignment:
Q  373 agttctatttgagttagtcaacaata-catagaagattagaggtgaaactacaatagaaatagttatgattaattcataaaatgctattaatatgttgga 471  Q
    |||||||||||||| ||| ||||| | ||||||  ||||||||||||||||||| ||  |||||| |||||||| ||||||||||||||||||||||       
T  15124539 agttctatttgagt-agttaacaaaagcatagagtattagaggtgaaactacaacagctatagttctgattaatgcataaaatgctattaatatgttttc 15124441  T
Q  472 ttatagctaagttctaactacaaacaaaagatataaactcttagtattgttcaaagtcctctctctaactctaacaagttattcccaagcatgaacaaat 571  Q
    || ||| || | |||||||| | || |||||   |||||||| |||||||||  |||||||||||||||      |||| ||||||||||||||||||||    
T  15124440 ttttaggtatgatctaactatagaccaaagaaccaaactctttgtattgttcttagtcctctctctaac------aagtgattcccaagcatgaacaaat 15124347  T
Q  572 tttttacaagccatgtttgcttcatcttca 601  Q
    |||||| |||||||||||||||||||||||    
T  15124346 tttttataagccatgtttgcttcatcttca 15124317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 428 - 601
Target Start/End: Complemental strand, 5305235 - 5305068
Alignment:
Q  428 gaaatagttatgattaattcataaaatgctattaatatgttggattatagctaagttctaactacaaacaaaagatataaactcttagtattgttcaaag 527  Q
    ||||||||| |||||||| ||||||||||||||||||||||   || ||   ||||||| |||| | || |||||   |||||||| ||||| |||   |    
T  5305235 gaaatagttctgattaatgcataaaatgctattaatatgttttcttttaagaaagttcttactatagaccaaagaaccaaactctttgtattattctttg 5305136  T
Q  528 tcctctctctaactctaacaagttattcccaagcatgaacaaattttttacaagccatgtttgcttcatcttca 601  Q
    |||||||||||||      |||| |||||||||||||||||||||||||| ||||||||| |||||||||||||    
T  5305135 tcctctctctaac------aagtgattcccaagcatgaacaaattttttataagccatgtctgcttcatcttca 5305068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 407 - 468
Target Start/End: Complemental strand, 5312468 - 5312407
Alignment:
Q  407 attagaggtgaaactacaatagaaatagttatgattaattcataaaatgctattaatatgtt 468  Q
    ||||||||||||||||||| |||||||||| |||||||| ||||||||||||||| ||||||    
T  5312468 attagaggtgaaactacaacagaaatagttctgattaatgcataaaatgctattactatgtt 5312407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 410 - 601
Target Start/End: Original strand, 5284350 - 5284535
Alignment:
Q  410 agaggtgaaactacaatagaaatagttatgattaattcataaaatgctattaatatgttggattatagctaagttctaactacaaacaaaagatataaac 509  Q
    |||||||||||||||  |||||||||| |||||||| ||||||||||||||||||||||   || ||   ||||||||| || | || |||||   ||||    
T  5284350 agaggtgaaactacagcagaaatagttctgattaatgcataaaatgctattaatatgttttcttttaagaaagttctaattatagaccaaagaaccaaac 5284449  T
Q  510 tcttagtattgttcaaagtcctctctctaactctaacaagttattcccaagcatgaacaaattttttacaagccatgtttgcttcatcttca 601  Q
    |||| ||||| |||   ||| | |      ||||||||||| ||||||||||| |||| ||||||| | ||||||||| |||||||||||||    
T  5284450 tctttgtattattctttgtcttgt------ctctaacaagtgattcccaagcacgaacgaatttttgataagccatgtctgcttcatcttca 5284535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 373 - 537
Target Start/End: Original strand, 14951128 - 14951292
Alignment:
Q  373 agttctatttgagttagtcaacaata-catagaagattagaggtgaaactacaatagaaatagttatgattaattcataaaatgctattaatatgttgga 471  Q
    |||||||||||||| ||| ||||| | ||||||  || |||||||||||||||| ||  |||||| |||||||| ||||||||||||||||||||||       
T  14951128 agttctatttgagt-agttaacaaaagcatagagtatcagaggtgaaactacaacagctatagttctgattaatgcataaaatgctattaatatgttttc 14951226  T
Q  472 ttatagctaagttctaactacaaacaaaagatataaactcttagtattgttcaaagtcctctctct 537  Q
    || ||| |||| |||||||| | || |||||   |||||||| |||| ||||  |||||| |||||    
T  14951227 ttttaggtaagatctaactatagaccaaagaaccaaactcttcgtatcgttcttagtcctttctct 14951292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 374 - 468
Target Start/End: Original strand, 5291809 - 5291903
Alignment:
Q  374 gttctatttgagttagtcaacaata-catagaagattagaggtgaaactacaatagaaatagttatgattaattcataaaatgctattaatatgtt 468  Q
    ||||||||||||| ||| ||||| | ||||||  || |||||||||||| |||  |||| |||| | |||||| ||||||||||||||||||||||    
T  5291809 gttctatttgagt-agttaacaaaagcatagagtataagaggtgaaactgcaaccgaaacagttcttattaatgcataaaatgctattaatatgtt 5291903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0060 (Bit Score: 51; Significance: 1e-19; HSPs: 3)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 27 - 124
Target Start/End: Complemental strand, 23567 - 23469
Alignment:
Q  27 aacttgttcaattttggattaagctaggctt-gtttcatagaataattgttcaattttggatttagaacaaaatttccaagaggaaattgaacatcaat 124  Q
    ||||||||||||||||||||||| | ||||| ||| |||||||||||| |||||||||||||||||||||| || |   |||| |||||||||||||||    
T  23567 aacttgttcaattttggattaagatgggctttgttgcatagaataatttttcaattttggatttagaacaagatgtatgagagaaaattgaacatcaat 23469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0060; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 48
Target Start/End: Complemental strand, 10450 - 10411
Alignment:
Q  9 ctattctttaaaactataaacttgttcaattttggattaa 48  Q
    ||||||||||||||| | ||||||||||||||||||||||    
T  10450 ctattctttaaaactttgaacttgttcaattttggattaa 10411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0060; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 65 - 94
Target Start/End: Complemental strand, 14192 - 14163
Alignment:
Q  65 agaataattgttcaattttggatttagaac 94  Q
    ||||||||||||||||||||||||||||||    
T  14192 agaataattgttcaattttggatttagaac 14163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0272 (Bit Score: 36; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0272
Description:

Target: scaffold0272; HSP #1
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 348 - 422
Target Start/End: Original strand, 19888 - 19962
Alignment:
Q  348 tttcaattgggagcagatacctataagttctatttgagttagtcaacaata-catagaagattagaggtgaaacta 422  Q
    ||||||||||||||| ||| ||||||||||||||||| ||||| |||||||  |||||  ||||||||||||||||    
T  19888 tttcaattgggagcacatagctataagttctatttga-ttagttaacaatagtatagagtattagaggtgaaacta 19962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 36; Significance: 0.00000000009; HSPs: 3)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 541 - 592
Target Start/End: Complemental strand, 39677 - 39626
Alignment:
Q  541 tctaacaagttattcccaagcatgaacaaattttttacaagccatgtttgct 592  Q
    |||||||||| |||||||||| ||||||||||||||  ||||||||||||||    
T  39677 tctaacaagtgattcccaagcttgaacaaattttttgtaagccatgtttgct 39626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016; HSP #2
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 348 - 422
Target Start/End: Complemental strand, 39849 - 39775
Alignment:
Q  348 tttcaattgggagcagatacctataagttctatttgagttagtcaacaata-catagaagattagaggtgaaacta 422  Q
    ||||||||||||||| ||| ||||||||||||||||| ||||| |||||||  |||||  ||||||||||||||||    
T  39849 tttcaattgggagcacatagctataagttctatttga-ttagttaacaatagtatagagtattagaggtgaaacta 39775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016; HSP #3
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 541 - 592
Target Start/End: Complemental strand, 61238 - 61187
Alignment:
Q  541 tctaacaagttattcccaagcatgaacaaattttttacaagccatgtttgct 592  Q
    |||||||||| |||||||||| ||||||||||||||  ||||||||||||||    
T  61238 tctaacaagtaattcccaagcttgaacaaattttttgtaagccatgtttgct 61187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000009; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 342 - 436
Target Start/End: Original strand, 11831658 - 11831754
Alignment:
Q  342 agtgcgtttcaattgggagcagatacctataagttctatttgagttagtcaacaata---catagaagattagaggtgaaactacaatagaaatagtt 436  Q
    ||||| ||||| ||||||||| ||| ||||||||||||| | | ||||| |||||||   |||| |  ||||||||||||||||||||||||||||||    
T  11831658 agtgcctttcagttgggagcaaatagctataagttctatgtaa-ttagttaacaatagcacatatagtattagaggtgaaactacaatagaaatagtt 11831754  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 823 - 886
Target Start/End: Original strand, 883864 - 883929
Alignment:
Q  823 taattaaatgca--ttttttacgtcattttatatttataaaccacatcaaccgttaattttgtcaa 886  Q
    ||||||||||||  ||||||| ||||||| |||||||||| | || ||||||||||||||| ||||    
T  883864 taattaaatgcacattttttatgtcatttcatatttataagctacttcaaccgttaattttatcaa 883929  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 823 - 886
Target Start/End: Original strand, 1243193 - 1243258
Alignment:
Q  823 taattaaatgca--ttttttacgtcattttatatttataaaccacatcaaccgttaattttgtcaa 886  Q
    ||||||||||||  ||||||| ||||||| |||||||||| | || ||||||||||||||| ||||    
T  1243193 taattaaatgcacattttttatgtcatttcatatttataagctacttcaaccgttaattttatcaa 1243258  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000005; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 63 - 119
Target Start/End: Complemental strand, 21634078 - 21634022
Alignment:
Q  63 atagaataattgttcaattttggatttagaacaaaatttccaagaggaaattgaaca 119  Q
    |||||||||||||||||||||||||||||||| | ||  | | ||||||||||||||    
T  21634078 atagaataattgttcaattttggatttagaactagataactatgaggaaattgaaca 21634022  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 63 - 119
Target Start/End: Complemental strand, 21642325 - 21642269
Alignment:
Q  63 atagaataattgttcaattttggatttagaacaaaatttccaagaggaaattgaaca 119  Q
    |||||||||||||||||||||||||||||||| | ||  | | ||||||||||||||    
T  21642325 atagaataattgttcaattttggatttagaactagataactatgaggaaattgaaca 21642269  T

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Target: scaffold0719 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: scaffold0719
Description:

Target: scaffold0719; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 348 - 422
Target Start/End: Original strand, 5815 - 5889
Alignment:
Q  348 tttcaattgggagcagatacctataagttctatttgagttagtcaacaata-catagaagattagaggtgaaacta 422  Q
    ||||||||||||||| ||| ||||||||||||||||| ||||| |||||||   ||||  ||||||||||||||||    
T  5815 tttcaattgggagcacatagctataagttctatttga-ttagttaacaatagtttagagtattagaggtgaaacta 5889  T

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Target: scaffold0719; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 543 - 592
Target Start/End: Original strand, 5989 - 6038
Alignment:
Q  543 taacaagttattcccaagcatgaacaaattttttacaagccatgtttgct 592  Q
    |||||||| |||||||||| ||||||||||||||  ||| ||||||||||    
T  5989 taacaagtgattcccaagcttgaacaaattttttgtaagtcatgtttgct 6038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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