View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5949-Insertion-2 (Length: 905)

Name: NF5949-Insertion-2
Description: NF5949
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5949-Insertion-2
NF5949-Insertion-2
[»] chr3 (16 HSPs)
chr3 (242-577)||(54733703-54734052)
chr3 (731-905)||(54733369-54733543)
chr3 (574-705)||(54733538-54733669)
chr3 (92-200)||(54734146-54734254)
chr3 (29-79)||(54528983-54529033)
chr3 (15-79)||(33148826-33148890)
chr3 (15-79)||(33450047-33450111)
chr3 (22-79)||(7546078-7546135)
chr3 (34-79)||(21566981-21567026)
chr3 (34-79)||(50663876-50663921)
chr3 (15-74)||(52311860-52311919)
chr3 (23-77)||(3540254-3540308)
chr3 (29-79)||(42947376-42947426)
chr3 (29-79)||(47064865-47064915)
chr3 (22-79)||(42951008-42951065)
chr3 (219-248)||(54734098-54734127)
[»] chr7 (11 HSPs)
chr7 (33-79)||(28138760-28138806)
chr7 (33-79)||(26009370-26009416)
chr7 (22-79)||(23345066-23345123)
chr7 (22-79)||(36325620-36325677)
chr7 (25-76)||(23344444-23344495)
chr7 (33-79)||(26011984-26012030)
chr7 (15-79)||(10526997-10527061)
chr7 (33-79)||(19931489-19931535)
chr7 (33-79)||(33839473-33839519)
chr7 (33-79)||(41957597-41957643)
chr7 (29-79)||(42548162-42548212)
[»] scaffold0163 (1 HSPs)
scaffold0163 (29-79)||(35777-35827)
[»] chr6 (7 HSPs)
chr6 (33-79)||(14153355-14153401)
chr6 (31-79)||(806546-806594)
chr6 (23-79)||(2559640-2559696)
chr6 (33-79)||(1826590-1826636)
chr6 (15-55)||(1826136-1826176)
chr6 (29-79)||(35060922-35060972)
chr6 (22-79)||(6819611-6819668)
[»] chr2 (8 HSPs)
chr2 (15-77)||(17797025-17797087)
chr2 (17-77)||(9539093-9539153)
chr2 (33-79)||(25389881-25389927)
chr2 (41-79)||(28360221-28360259)
chr2 (31-79)||(31133180-31133228)
chr2 (15-74)||(38147085-38147144)
chr2 (33-79)||(12965050-12965096)
chr2 (33-79)||(22788016-22788062)
[»] chr4 (7 HSPs)
chr4 (29-79)||(33164532-33164582)
chr4 (34-79)||(38677694-38677739)
chr4 (29-79)||(28796621-28796671)
chr4 (29-79)||(36217871-36217921)
chr4 (25-79)||(37576544-37576598)
chr4 (33-79)||(54208181-54208227)
chr4 (35-68)||(37030921-37030954)
[»] chr1 (8 HSPs)
chr1 (29-79)||(3792297-3792347)
chr1 (33-79)||(5602945-5602991)
chr1 (31-77)||(9862921-9862967)
chr1 (29-79)||(37260940-37260990)
chr1 (32-76)||(35392134-35392178)
chr1 (29-79)||(20447024-20447074)
chr1 (29-79)||(20532787-20532837)
chr1 (33-79)||(28476013-28476059)
[»] chr8 (1 HSPs)
chr8 (15-79)||(3588558-3588622)
[»] chr5 (1 HSPs)
chr5 (25-79)||(3758923-3758977)


Alignment Details
Target: chr3 (Bit Score: 243; Significance: 1e-134; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 242 - 577
Target Start/End: Complemental strand, 54734052 - 54733703
Alignment:
Q  242 ttaattttcaatcatagaggaaggtggattgagccattt--aactgttgaattgaagctcatcaaagagggaaagttatcataatatctattttctcctt 339  Q
    |||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||    
T  54734052 ttaattttcaatcatagaggaaggtggattgagccatttttaactgttgaattgaagctcatcaaagagggaaagttatcataatatcttttttctc-tt 54733954  T
Q  340 gagaatcttgtacaattcctagctaattaaaagcaaa---------------agctaaaacatcaaatttagacctagagccnnnnnnngaagttaaaat 424  Q
    |||||||||||||||||||||||||||||||||||||               ||||||||||||||||||||||||||||||        ||||||| ||    
T  54733953 gagaatcttgtacaattcctagctaattaaaagcaaagatataaaaagcaaaagctaaaacatcaaatttagacctagagccaaaaaa--aagttaacat 54733856  T
Q  425 aataatgtattttggcttgtgtagcaccattccaaattccaaataagagtgtgtttagcttctccccattgaggcaacctaactaattattttccatggt 524  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54733855 aataatgtattttggcttgtgtagcaccattccaaattccaaataagagtgtgtttagcttctccccattgaggcaacctaactaattattttccatggt 54733756  T
Q  525 gacaagttgttgaaccgcatcacagtaagacagacattcaatcttacgtacta 577  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  54733755 gacaagttgttgaaccgcatcacagtaagacagacattaaatcttacgtacta 54733703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 163; E-Value: 1e-86
Query Start/End: Original strand, 731 - 905
Target Start/End: Complemental strand, 54733543 - 54733369
Alignment:
Q  731 tcacatagttgtttgttcattaaacagaagaagacacataaaggtttaaccttagtttacaatccaattttcacacaaattacatacacagattagctag 830  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  54733543 tcacatagttgtttgttcattaaacagaagaagacacataaaggtttaaccttagtttacaatccaattttcaaacaaattacatacacagattagctag 54733444  T
Q  831 gaataaatatggtttgtacttcatttattcgtagcttctgttgtcttgcaatgaatgcctccacggtgcgacgaa 905  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||    
T  54733443 gaataaatatggtttgtacttcatttattcgtagcttccgttgtcttgcaatgaatgcctccaccgtgcgacgaa 54733369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 112; E-Value: 4e-56
Query Start/End: Original strand, 574 - 705
Target Start/End: Complemental strand, 54733669 - 54733538
Alignment:
Q  574 actaccataaaaaccaaattggaaaacaccaccatgttttctaactcgaaactcaacaaaattagattaatagactcaaatgtttataatccaaatagtt 673  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| ||    
T  54733669 actaccataaaaaccaaattggaaaacaccaccatgttttctaactagaaacccaacaaaattagattaatagactcaaatgtttataatccaaatactt 54733570  T
Q  674 atttactcacttgccctaatctttatttacat 705  Q
    ||| ||||||||||||||||||||||| ||||    
T  54733569 attcactcacttgccctaatctttattcacat 54733538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 92 - 200
Target Start/End: Complemental strand, 54734254 - 54734146
Alignment:
Q  92 tatcgtgtttctttgttagagtggtgatgttgattcgaccaaagaaaaaagagtggtaatgctacagaaaatgttgatattattcggtgtaaattacttt 191  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54734254 tatcgtgtttctttgttagagtggtgatgttgattcgaccaaagaaaaaagagtggtaatgctacagaaaatgttgatattattcggtgtaaattacttt 54734155  T
Q  192 caactcaca 200  Q
    |||||||||    
T  54734154 caactcaca 54734146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 29 - 79
Target Start/End: Original strand, 54528983 - 54529033
Alignment:
Q  29 tggacatttactttgagaatgagcaaaatcatttgggtaaagagcagaatt 79  Q
    ||||||||||| |||||||||||||||||||||| ||||||||||||||||    
T  54528983 tggacatttacattgagaatgagcaaaatcattttggtaaagagcagaatt 54529033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 15 - 79
Target Start/End: Complemental strand, 33148890 - 33148826
Alignment:
Q  15 acgcagaggcaatatggacatttactttgagaatgagcaaaatcatttgggtaaagagcagaatt 79  Q
    ||||| |||||||||| |||||||||||| ||| |||||||| | ||||||||| ||||||||||    
T  33148890 acgcaaaggcaatatgtacatttactttgggaacgagcaaaaacgtttgggtaatgagcagaatt 33148826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 15 - 79
Target Start/End: Original strand, 33450047 - 33450111
Alignment:
Q  15 acgcagaggcaatatggacatttactttgagaatgagcaaaatcatttgggtaaagagcagaatt 79  Q
    |||||| | ||||||||||||||| |||||||||||||||||   ||||||||| ||||||||||    
T  33450047 acgcagggacaatatggacatttattttgagaatgagcaaaacagtttgggtaatgagcagaatt 33450111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 22 - 79
Target Start/End: Complemental strand, 7546135 - 7546078
Alignment:
Q  22 ggcaatatggacatttactttgagaatgagcaaaatcatttgggtaaagagcagaatt 79  Q
    |||||||||||||||||||||| ||| |||| |||   ||||||||||||||||||||    
T  7546135 ggcaatatggacatttactttgggaacgagcgaaacagtttgggtaaagagcagaatt 7546078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 34 - 79
Target Start/End: Original strand, 21566981 - 21567026
Alignment:
Q  34 atttactttgagaatgagcaaaatcatttgggtaaagagcagaatt 79  Q
    |||||| ||| ||||||| |||||||||||||||||||||||||||    
T  21566981 atttacattgggaatgagaaaaatcatttgggtaaagagcagaatt 21567026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 34 - 79
Target Start/End: Complemental strand, 50663921 - 50663876
Alignment:
Q  34 atttactttgagaatgagcaaaatcatttgggtaaagagcagaatt 79  Q
    |||||||||| |||||||| ||||||||||||| ||||||||||||    
T  50663921 atttactttgggaatgagcgaaatcatttgggtgaagagcagaatt 50663876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 74
Target Start/End: Original strand, 52311860 - 52311919
Alignment:
Q  15 acgcagaggcaatatggacatttactttgagaatgagcaaaatcatttgggtaaagagca 74  Q
    |||||| |||||||| ||||||||||||| ||| ||||||||  |||| |||||||||||    
T  52311860 acgcaggggcaatatagacatttactttgggaacgagcaaaacaattttggtaaagagca 52311919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 23 - 77
Target Start/End: Original strand, 3540254 - 3540308
Alignment:
Q  23 gcaatatggacatttactttgagaatgagcaaaatcatttgggtaaagagcagaa 77  Q
    ||||||||||||||||||||| ||| ||||||||   ||| ||||||||||||||    
T  3540254 gcaatatggacatttactttgggaacgagcaaaacagttttggtaaagagcagaa 3540308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 29 - 79
Target Start/End: Complemental strand, 42947426 - 42947376
Alignment:
Q  29 tggacatttactttgagaatgagcaaaatcatttgggtaaagagcagaatt 79  Q
    ||||| |||||||||||||||||  ||||||||| ||||| ||||||||||    
T  42947426 tggacttttactttgagaatgagtgaaatcatttaggtaatgagcagaatt 42947376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 29 - 79
Target Start/End: Complemental strand, 47064915 - 47064865
Alignment:
Q  29 tggacatttactttgagaatgagcaaaatcatttgggtaaagagcagaatt 79  Q
    ||||| ||||||||| ||||||||| |||||||||||||| ||||| ||||    
T  47064915 tggacttttactttgggaatgagcagaatcatttgggtaatgagcataatt 47064865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 79
Target Start/End: Original strand, 42951008 - 42951065
Alignment:
Q  22 ggcaatatggacatttactttgagaatgagcaaaatcatttgggtaaagagcagaatt 79  Q
    |||||||||||||||||||||| ||||||||  ||  ||||| |||| ||||||||||    
T  42951008 ggcaatatggacatttactttgggaatgagcggaagtatttgagtaatgagcagaatt 42951065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 219 - 248
Target Start/End: Complemental strand, 54734127 - 54734098
Alignment:
Q  219 cattcctatgctaacttataattttaattt 248  Q
    ||||||||||||||||||||||||||||||    
T  54734127 cattcctatgctaacttataattttaattt 54734098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000006; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 33 - 79
Target Start/End: Complemental strand, 28138806 - 28138760
Alignment:
Q  33 catttactttgagaatgagcaaaatcatttgggtaaagagcagaatt 79  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||    
T  28138806 catttactttgggaatgagcaaaatcatttgggtaaagagcagaatt 28138760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 33 - 79
Target Start/End: Complemental strand, 26009416 - 26009370
Alignment:
Q  33 catttactttgagaatgagcaaaatcatttgggtaaagagcagaatt 79  Q
    ||||||||||| |||||||||||||| ||||||||||||||||||||    
T  26009416 catttactttgggaatgagcaaaatcgtttgggtaaagagcagaatt 26009370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 22 - 79
Target Start/End: Original strand, 23345066 - 23345123
Alignment:
Q  22 ggcaatatggacatttactttgagaatgagcaaaatcatttgggtaaagagcagaatt 79  Q
    ||||||||| ||||||| |||| |||||||||||||| ||||||||||||||| ||||    
T  23345066 ggcaatatgaacatttattttgggaatgagcaaaatcgtttgggtaaagagcataatt 23345123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 22 - 79
Target Start/End: Complemental strand, 36325677 - 36325620
Alignment:
Q  22 ggcaatatggacatttactttgagaatgagcaaaatcatttgggtaaagagcagaatt 79  Q
    |||||||||||||||||||||||||| ||||||||   |||| |||||||||||||||    
T  36325677 ggcaatatggacatttactttgagaacgagcaaaactgtttgagtaaagagcagaatt 36325620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 25 - 76
Target Start/End: Complemental strand, 23344495 - 23344444
Alignment:
Q  25 aatatggacatttactttgagaatgagcaaaatcatttgggtaaagagcaga 76  Q
    |||||||||||||||||| | ||||||||||| | |||||||||||||||||    
T  23344495 aatatggacatttactttaaaaatgagcaaaaccgtttgggtaaagagcaga 23344444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 33 - 79
Target Start/End: Original strand, 26011984 - 26012030
Alignment:
Q  33 catttactttgagaatgagcaaaatcatttgggtaaagagcagaatt 79  Q
    ||||||||||||||||||  |||||| ||||||||||||||||||||    
T  26011984 catttactttgagaatgattaaaatcgtttgggtaaagagcagaatt 26012030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 15 - 79
Target Start/End: Original strand, 10526997 - 10527061
Alignment:
Q  15 acgcagaggcaatatggacatttactttgagaatgagcaaaatcatttgggtaaagagcagaatt 79  Q
    ||||| ||||||| ||||||||||||||| ||||||   ||  ||||||||||||||||||||||    
T  10526997 acgcaaaggcaatttggacatttactttgggaatgattgaatccatttgggtaaagagcagaatt 10527061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 33 - 79
Target Start/End: Complemental strand, 19931535 - 19931489
Alignment:
Q  33 catttactttgagaatgagcaaaatcatttgggtaaagagcagaatt 79  Q
    ||||||||||||||| |||||||| ||||| | ||||||||||||||    
T  19931535 catttactttgagaacgagcaaaaccatttagataaagagcagaatt 19931489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 33 - 79
Target Start/End: Original strand, 33839473 - 33839519
Alignment:
Q  33 catttactttgagaatgagcaaaatcatttgggtaaagagcagaatt 79  Q
    |||||||||||||||||||| ||  ||||||| ||||||||||||||    
T  33839473 catttactttgagaatgagcgaatccatttggataaagagcagaatt 33839519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 33 - 79
Target Start/End: Original strand, 41957597 - 41957643
Alignment:
Q  33 catttactttgagaatgagcaaaatcatttgggtaaagagcagaatt 79  Q
    ||||||||||| |||||| ||||||| ||||||||||||||| ||||    
T  41957597 catttactttgggaatgatcaaaatcgtttgggtaaagagcaaaatt 41957643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 29 - 79
Target Start/End: Complemental strand, 42548212 - 42548162
Alignment:
Q  29 tggacatttactttgagaatgagcaaaatcatttgggtaaagagcagaatt 79  Q
    ||||| ||||||||| ||||||||||||  |||||||||| ||||||||||    
T  42548212 tggacttttactttgggaatgagcaaaacgatttgggtaatgagcagaatt 42548162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0163 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0163
Description:

Target: scaffold0163; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 29 - 79
Target Start/End: Complemental strand, 35827 - 35777
Alignment:
Q  29 tggacatttactttgagaatgagcaaaatcatttgggtaaagagcagaatt 79  Q
    |||||||||||||||||||||||||||||  ||||| ||||||||||||||    
T  35827 tggacatttactttgagaatgagcaaaattgtttggttaaagagcagaatt 35777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.000000000001; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 33 - 79
Target Start/End: Complemental strand, 14153401 - 14153355
Alignment:
Q  33 catttactttgagaatgagcaaaatcatttgggtaaagagcagaatt 79  Q
    ||||||||||| |||||||||||||||||||||||| ||||||||||    
T  14153401 catttactttgggaatgagcaaaatcatttgggtaatgagcagaatt 14153355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 31 - 79
Target Start/End: Complemental strand, 806594 - 806546
Alignment:
Q  31 gacatttactttgagaatgagcaaaatcatttgggtaaagagcagaatt 79  Q
    ||||||||||||||||||||||||||   ||||||||||||||||||||    
T  806594 gacatttactttgagaatgagcaaaactgtttgggtaaagagcagaatt 806546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 23 - 79
Target Start/End: Original strand, 2559640 - 2559696
Alignment:
Q  23 gcaatatggacatttactttgagaatgagcaaaatcatttgggtaaagagcagaatt 79  Q
    |||||||| |||||||||||| ||| |||||||||| ||||||||||||||| ||||    
T  2559640 gcaatatgaacatttactttgggaacgagcaaaatcgtttgggtaaagagcaaaatt 2559696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 33 - 79
Target Start/End: Original strand, 1826590 - 1826636
Alignment:
Q  33 catttactttgagaatgagcaaaatcatttgggtaaagagcagaatt 79  Q
    |||||||||| | ||||||||||||||||||| ||||||||||||||    
T  1826590 catttactttaaaaatgagcaaaatcatttggataaagagcagaatt 1826636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 15 - 55
Target Start/End: Complemental strand, 1826176 - 1826136
Alignment:
Q  15 acgcagaggcaatatggacatttactttgagaatgagcaaa 55  Q
    ||||| ||| |||||||||||||||||||||||||||||||    
T  1826176 acgcaaaggtaatatggacatttactttgagaatgagcaaa 1826136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 29 - 79
Target Start/End: Original strand, 35060922 - 35060972
Alignment:
Q  29 tggacatttactttgagaatgagcaaaatcatttgggtaaagagcagaatt 79  Q
    |||||||||||||||  |||||||  |||||||||||||| ||||||||||    
T  35060922 tggacatttactttggaaatgagcggaatcatttgggtaatgagcagaatt 35060972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 79
Target Start/End: Original strand, 6819611 - 6819668
Alignment:
Q  22 ggcaatatggacatttactttgagaatgagcaaaatcatttgggtaaagagcagaatt 79  Q
    ||||||||||||||||| |||| ||| ||||||||   ||| ||||||||||||||||    
T  6819611 ggcaatatggacatttattttgggaacgagcaaaactgttttggtaaagagcagaatt 6819668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.000000000001; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 15 - 77
Target Start/End: Original strand, 17797025 - 17797087
Alignment:
Q  15 acgcagaggcaatatggacatttactttgagaatgagcaaaatcatttgggtaaagagcagaa 77  Q
    |||||| |||||||||||||||||||||| |||  ||||||||  ||||||||||||||||||    
T  17797025 acgcaggggcaatatggacatttactttgggaacaagcaaaattgtttgggtaaagagcagaa 17797087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 17 - 77
Target Start/End: Original strand, 9539093 - 9539153
Alignment:
Q  17 gcagaggcaatatggacatttactttgagaatgagcaaaatcatttgggtaaagagcagaa 77  Q
    |||| ||||||||| |||||||||||| |||||||||||||  ||| ||||||||||||||    
T  9539093 gcaggggcaatatgaacatttactttgggaatgagcaaaatagttttggtaaagagcagaa 9539153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 33 - 79
Target Start/End: Original strand, 25389881 - 25389927
Alignment:
Q  33 catttactttgagaatgagcaaaatcatttgggtaaagagcagaatt 79  Q
    |||||||||||||||||||||||  |||||| |||||||||||||||    
T  25389881 catttactttgagaatgagcaaatccatttgagtaaagagcagaatt 25389927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 41 - 79
Target Start/End: Original strand, 28360221 - 28360259
Alignment:
Q  41 ttgagaatgagcaaaatcatttgggtaaagagcagaatt 79  Q
    |||||||||||||||| ||||||||||||||||||||||    
T  28360221 ttgagaatgagcaaaaacatttgggtaaagagcagaatt 28360259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 31 - 79
Target Start/End: Complemental strand, 31133228 - 31133180
Alignment:
Q  31 gacatttactttgagaatgagcaaaatcatttgggtaaagagcagaatt 79  Q
    |||||||||||| | ||||||| |||| |||||||||||||||||||||    
T  31133228 gacatttactttaaaaatgagcgaaatgatttgggtaaagagcagaatt 31133180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 74
Target Start/End: Original strand, 38147085 - 38147144
Alignment:
Q  15 acgcagaggcaatatggacatttactttgagaatgagcaaaatcatttgggtaaagagca 74  Q
    ||||||||| |||||| |||||||||||  |||||||| ||  |||||||||||||||||    
T  38147085 acgcagaggtaatatgaacatttactttaggaatgagcgaatccatttgggtaaagagca 38147144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 33 - 79
Target Start/End: Complemental strand, 12965096 - 12965050
Alignment:
Q  33 catttactttgagaatgagcaaaatcatttgggtaaagagcagaatt 79  Q
    |||||||||||| |||||||| || | ||||||||||||||||||||    
T  12965096 catttactttgaaaatgagcagaaacgtttgggtaaagagcagaatt 12965050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 33 - 79
Target Start/End: Original strand, 22788016 - 22788062
Alignment:
Q  33 catttactttgagaatgagcaaaatcatttgggtaaagagcagaatt 79  Q
    ||||||||||| |||||| ||||  ||||||||||||||||||||||    
T  22788016 catttactttgggaatgaacaaatccatttgggtaaagagcagaatt 22788062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.0000000003; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 29 - 79
Target Start/End: Original strand, 33164532 - 33164582
Alignment:
Q  29 tggacatttactttgagaatgagcaaaatcatttgggtaaagagcagaatt 79  Q
    ||||||||||||||||||||||||  || ||||||||||| ||||||||||    
T  33164532 tggacatttactttgagaatgagcggaaccatttgggtaatgagcagaatt 33164582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 34 - 79
Target Start/End: Original strand, 38677694 - 38677739
Alignment:
Q  34 atttactttgagaatgagcaaaatcatttgggtaaagagcagaatt 79  Q
    |||||||||| |||||| ||||||| ||||||||||||||||||||    
T  38677694 atttactttgggaatgaacaaaatcgtttgggtaaagagcagaatt 38677739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 29 - 79
Target Start/End: Complemental strand, 28796671 - 28796621
Alignment:
Q  29 tggacatttactttgagaatgagcaaaatcatttgggtaaagagcagaatt 79  Q
    |||||||||||||||||||||||| | ||  ||||||||| ||||||||||    
T  28796671 tggacatttactttgagaatgagcgatattgtttgggtaatgagcagaatt 28796621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 29 - 79
Target Start/End: Complemental strand, 36217921 - 36217871
Alignment:
Q  29 tggacatttactttgagaatgagcaaaatcatttgggtaaagagcagaatt 79  Q
    ||||| ||||||||| ||||||| |||| |||||| |||||||||||||||    
T  36217921 tggacttttactttgggaatgagtaaaaccatttgagtaaagagcagaatt 36217871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 25 - 79
Target Start/End: Complemental strand, 37576598 - 37576544
Alignment:
Q  25 aatatggacatttactttgagaatgagcaaaatcatttgggtaaagagcagaatt 79  Q
    |||||||||||||||||||  || |||||||| | ||||||||| ||||||||||    
T  37576598 aatatggacatttactttggaaacgagcaaaaccgtttgggtaatgagcagaatt 37576544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 33 - 79
Target Start/End: Complemental strand, 54208227 - 54208181
Alignment:
Q  33 catttactttgagaatgagcaaaatcatttgggtaaagagcagaatt 79  Q
    ||||||||||| |||||||||||| ||||||| ||||||||| ||||    
T  54208227 catttactttgggaatgagcaaaaccatttggataaagagcataatt 54208181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 68
Target Start/End: Complemental strand, 37030954 - 37030921
Alignment:
Q  35 tttactttgagaatgagcaaaatcatttgggtaa 68  Q
    ||||||||| ||||||||||||||||||||||||    
T  37030954 tttactttgggaatgagcaaaatcatttgggtaa 37030921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.0000000003; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 29 - 79
Target Start/End: Complemental strand, 3792347 - 3792297
Alignment:
Q  29 tggacatttactttgagaatgagcaaaatcatttgggtaaagagcagaatt 79  Q
    |||||||||| |||||||||||| | |||||||||||||| ||||||||||    
T  3792347 tggacatttattttgagaatgagtagaatcatttgggtaatgagcagaatt 3792297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 33 - 79
Target Start/End: Complemental strand, 5602991 - 5602945
Alignment:
Q  33 catttactttgagaatgagcaaaatcatttgggtaaagagcagaatt 79  Q
    ||||||||||| |||||||||||  ||||||||||||||||||||||    
T  5602991 catttactttgggaatgagcaaatccatttgggtaaagagcagaatt 5602945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 31 - 77
Target Start/End: Original strand, 9862921 - 9862967
Alignment:
Q  31 gacatttactttgagaatgagcaaaatcatttgggtaaagagcagaa 77  Q
    |||||||| |||| |||||||| ||||||||||||||||||||||||    
T  9862921 gacatttattttgggaatgagcgaaatcatttgggtaaagagcagaa 9862967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 29 - 79
Target Start/End: Original strand, 37260940 - 37260990
Alignment:
Q  29 tggacatttactttgagaatgagcaaaatcatttgggtaaagagcagaatt 79  Q
    ||||||||||||||||||||| |||||| | ||||||||||||||| ||||    
T  37260940 tggacatttactttgagaatgggcaaaaccgtttgggtaaagagcataatt 37260990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 32 - 76
Target Start/End: Original strand, 35392134 - 35392178
Alignment:
Q  32 acatttactttgagaatgagcaaaatcatttgggtaaagagcaga 76  Q
    |||||||||||| ||||||||||||  ||||||||||||||||||    
T  35392134 acatttactttgggaatgagcaaaacaatttgggtaaagagcaga 35392178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 29 - 79
Target Start/End: Complemental strand, 20447074 - 20447024
Alignment:
Q  29 tggacatttactttgagaatgagcaaaatcatttgggtaaagagcagaatt 79  Q
    ||||||||||||||||||||||||||||   |||||||||| |||| ||||    
T  20447074 tggacatttactttgagaatgagcaaaacagtttgggtaaaaagcataatt 20447024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 29 - 79
Target Start/End: Complemental strand, 20532837 - 20532787
Alignment:
Q  29 tggacatttactttgagaatgagcaaaatcatttgggtaaagagcagaatt 79  Q
    ||||||||||||||||||||||||||||   |||||||||| |||| ||||    
T  20532837 tggacatttactttgagaatgagcaaaacagtttgggtaaaaagcataatt 20532787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 33 - 79
Target Start/End: Original strand, 28476013 - 28476059
Alignment:
Q  33 catttactttgagaatgagcaaaatcatttgggtaaagagcagaatt 79  Q
    ||||||||||||||||||||  || ||||||||||| ||||||||||    
T  28476013 catttactttgagaatgagcggaaccatttgggtaatgagcagaatt 28476059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 15 - 79
Target Start/End: Original strand, 3588558 - 3588622
Alignment:
Q  15 acgcagaggcaatatggacatttactttgagaatgagcaaaatcatttgggtaaagagcagaatt 79  Q
    |||||| |||| | ||| |||||| |||| ||||||||||| |||||||||||||||| ||||||    
T  3588558 acgcaggggcattttggtcatttaatttgggaatgagcaaattcatttgggtaaagagtagaatt 3588622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 25 - 79
Target Start/End: Complemental strand, 3758977 - 3758923
Alignment:
Q  25 aatatggacatttactttgagaatgagcaaaatcatttgggtaaagagcagaatt 79  Q
    |||||| |||||||||||| ||||||| |||| | ||| ||||||||||||||||    
T  3758977 aatatgaacatttactttgggaatgagtaaaaccgttttggtaaagagcagaatt 3758923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University