View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5949-Insertion-3 (Length: 870)
Name: NF5949-Insertion-3
Description: NF5949
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5949-Insertion-3 |
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| [»] chr2 (3 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 781; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 781; E-Value: 0
Query Start/End: Original strand, 9 - 870
Target Start/End: Complemental strand, 7241219 - 7240344
Alignment:
| Q |
9 |
cacaacaggaacatatggaaaacatcttagaaaagagatttctgaggtagttttcacaatcagcaatatcagagatattttaagacatggtgagaaacac |
108 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7241219 |
cacaacaggaacatatggaaaacatcttagaaaagagatttctgaggtagttttcacaatcagcaatatcagagatattttaagacatggtgagaaacac |
7241120 |
T |
|
| Q |
109 |
cccttgttacagaaactgagcatagaaattttaacaagtcttgcattggaagatgaggcatcagaaaggattggaggtacaggtggagtgcttaaagaat |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7241119 |
cccttgttacagaaactgagcatagaaattttaacaagtcttgcattggaagatgaggcatcagaaaggattggaggtacaggtggagtgcttaaagaat |
7241020 |
T |
|
| Q |
209 |
tgttcaacatatttttcagacaaaacattcctgaaaaccagaaagatgtaacaactgttgctggtgaggccttatcaatgctggcattagaaagcaagag |
308 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7241019 |
tgttcaacatatttttcagacaaaacattcctgaaaaccagaaagatgtaacaactgttgctggtgaggccttatcaatgctggcattagaaagcaagag |
7240920 |
T |
|
| Q |
309 |
caactgtcatcggattttgaagttgagagtgctcgaaaggcttattgaagcattgaaagtaccgctgattcgtgtcagtgccgctagaattctaagaaat |
408 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
7240919 |
caactgtcatcggattttgaagttgagagtgctcgaaaggcttattgaagcattgaaagtaccactgattcgtgtcagtgccgctagaattctaagaaat |
7240820 |
T |
|
| Q |
409 |
ttatgcaactacagtggatcagaatgcttcaaccagttaaagggagttacagcagcagctccaacagtaagtgttattttcaatttttattaattaaaca |
508 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7240819 |
ttatgcaactacagtggatcagaatgcttcaaccagttaaagggagttacagcagcagctccaacagtaagtgttattttcaatttttattaattaaaca |
7240720 |
T |
|
| Q |
509 |
attacaagttttatcaaccaagttcaagcatgtgagattcgtaaagttatgtaagctttaagctgttttcataagctatctaggatagcttatgaaaact |
608 |
Q |
| |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7240719 |
attacaagttttatcaaccaagtccaagcatgtgagattcgtaaagttatgtaagctttaagctgttttcataagctatctaggatagcttatgaaaact |
7240620 |
T |
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| Q |
609 |
ctatgaaaatggcctatggacattttagaagctcttcacaatttcataggctctatcaaatggtctttcaagagcttatgtccataaatatgctaaaata |
708 |
Q |
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| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
7240619 |
atctgaaaatggcctatggacattttagaagctcttcacaatttcataggctctatcaaatggtctttcaagagcttatgtccatagatatgctaaaata |
7240520 |
T |
|
| Q |
709 |
agtcgattcaaatagacc--------------ctatgcttctattctattcagcaaaatgtctaccgatgattnnnnnnnntcatctttgaccattcctc |
794 |
Q |
| |
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|||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
7240519 |
agtcgattcaaatagaccctatcaaatagaccctatgtttctattctattcagcaaaatgtctaccgatgattaaaaaaaatcatctttgaccattcctc |
7240420 |
T |
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| Q |
795 |
aaccttgcagatacttcaggcaatcatgtcacaagagaataagctacaagaagtgatggttggactagcagcaaat |
870 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7240419 |
aaccttgcagatacttcaggcaatcatgtcacaagagaataagctacaagaagtgatggttggactagcagcaaat |
7240344 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 574 - 607
Target Start/End: Complemental strand, 9556280 - 9556247
Alignment:
| Q |
574 |
ttttcataagctatctaggatagcttatgaaaac |
607 |
Q |
| |
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|||||||||||| ||||||||||||||||||||| |
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| T |
9556280 |
ttttcataagctttctaggatagcttatgaaaac |
9556247 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 574 - 607
Target Start/End: Original strand, 10884550 - 10884583
Alignment:
| Q |
574 |
ttttcataagctatctaggatagcttatgaaaac |
607 |
Q |
| |
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|||||||||||| ||||||||||||||||||||| |
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| T |
10884550 |
ttttcataagctctctaggatagcttatgaaaac |
10884583 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 64; Significance: 2e-27; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 56 - 434
Target Start/End: Original strand, 48732749 - 48733130
Alignment:
| Q |
56 |
tagttttcacaatcagcaatatcagagatattttaagacatggtgagaaacaccccttgttacagaaactgagcatagaaattttaacaagtcttgcatt |
155 |
Q |
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|||| ||||| ||||| ||||| ||||||||||||| ||||| || | ||| || | ||||||||||||||||||| |||||||||| || ||||| |
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| T |
48732749 |
tagtgttcactatcagtaatattagagatattttaaagcatggagaaagacatccacttctacagaaactgagcatagagattttaacaaacctagcatt |
48732848 |
T |
|
| Q |
156 |
ggaagatgaggcatcagaaaggattggaggtacaggtggagtgcttaaagaattgttcaacatatttttcagacaaaacattcctgaaaaccagaaa--- |
252 |
Q |
| |
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|| ||||| ||| |||| || ||||| |||||||||||| ||||| ||||||||||||||||| |||||| ||| | | || ||| | |||| |
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| T |
48732849 |
agatgatgatgcaacagagagaattggtggtacaggtggaatgcttcaagaattgttcaacatacttttcaaacacagcgaaccagaagattggaaacat |
48732948 |
T |
|
| Q |
253 |
gatgtaacaactgttgctggtgaggccttatcaatgctggcattagaaagcaagagcaactgtcatcggattttgaagttgagagtgctcgaaaggctta |
352 |
Q |
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| ||||||| || ||| | |||||| || | ||| ||||||||||||||||||| ||||||||| | ||||||||| ||| | | || | ||||||| |
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| T |
48732949 |
ggtgtaacagttgctgccgccgaggccctagcgatgttggcattagaaagcaagagtaactgtcattgaattttgaagctgaaattacttggaaggcttg |
48733048 |
T |
|
| Q |
353 |
ttgaagcattgaaagtaccgctgattcgtgtcagtgccgctagaattctaagaaatttatgcaactacagtggatcagaatg |
434 |
Q |
| |
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| ||| ||||||||| ||| || |||| ||| || ||| |||||||||||||||||||| ||| ||||| |||||||| |
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| T |
48733049 |
tagaatcattgaaagatccgttgcttcgcatcaaggcagctgaaattctaagaaatttatgcatctatagtggctcagaatg |
48733130 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 793 - 870
Target Start/End: Original strand, 48733249 - 48733326
Alignment:
| Q |
793 |
tcaaccttgcagatacttcaggcaatcatgtcacaagagaataagctacaagaagtgatggttggactagcagcaaat |
870 |
Q |
| |
|
|||||| ||||||||||||| |||||||||||| |||| || ||| || |||||||||||| |||||||||||||||| |
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|
| T |
48733249 |
tcaaccctgcagatacttcaagcaatcatgtcagaagaaaacaagatataagaagtgatggctggactagcagcaaat |
48733326 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 561 - 606
Target Start/End: Original strand, 1706618 - 1706663
Alignment:
| Q |
561 |
aagctttaagctgttttcataagctatctaggatagcttatgaaaa |
606 |
Q |
| |
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||||| |||||||||||||||| |||||| ||| |||||||||||| |
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| T |
1706618 |
aagctataagctgttttcataaactatcttggacagcttatgaaaa |
1706663 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 562 - 606
Target Start/End: Original strand, 20370880 - 20370924
Alignment:
| Q |
562 |
agctttaagctgttttcataagctatctaggatagcttatgaaaa |
606 |
Q |
| |
|
|||||||||||||||||||| ||||||||||| ||||||||||| |
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| T |
20370880 |
agctttaagctgttttcatatgctatctaggagtgcttatgaaaa |
20370924 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000002; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 555 - 606
Target Start/End: Original strand, 1433538 - 1433589
Alignment:
| Q |
555 |
ttatgtaagctttaagctgttttcataagctatctaggatagcttatgaaaa |
606 |
Q |
| |
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|||| |||||||||||| |||||||||||||||| ||| |||||||||||| |
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| T |
1433538 |
ttatttaagctttaagcagttttcataagctatcctggagagcttatgaaaa |
1433589 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 567 - 606
Target Start/End: Original strand, 27028833 - 27028872
Alignment:
| Q |
567 |
taagctgttttcataagctatctaggatagcttatgaaaa |
606 |
Q |
| |
|
||||||||||||||||||||||| ||| |||||||||||| |
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| T |
27028833 |
taagctgttttcataagctatcttggagagcttatgaaaa |
27028872 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 567 - 608
Target Start/End: Original strand, 25097388 - 25097429
Alignment:
| Q |
567 |
taagctgttttcataagctatctaggatagcttatgaaaact |
608 |
Q |
| |
|
|||||||||||||||||||||| ||| |||||||||||||| |
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| T |
25097388 |
taagctgttttcataagctatcctggagagcttatgaaaact |
25097429 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 574 - 607
Target Start/End: Original strand, 26473781 - 26473814
Alignment:
| Q |
574 |
ttttcataagctatctaggatagcttatgaaaac |
607 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||| |
|
|
| T |
26473781 |
ttttcataagctctctaggatagcttatgaaaac |
26473814 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000008; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 560 - 602
Target Start/End: Original strand, 27548258 - 27548300
Alignment:
| Q |
560 |
taagctttaagctgttttcataagctatctaggatagcttatg |
602 |
Q |
| |
|
|||||| ||||||||||||||||||||||| ||||| |||||| |
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|
| T |
27548258 |
taagctataagctgttttcataagctatcttggataacttatg |
27548300 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 569 - 606
Target Start/End: Original strand, 529379 - 529416
Alignment:
| Q |
569 |
agctgttttcataagctatctaggatagcttatgaaaa |
606 |
Q |
| |
|
||||||||||||||||||||| ||| |||||||||||| |
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| T |
529379 |
agctgttttcataagctatcttggagagcttatgaaaa |
529416 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 558 - 604
Target Start/End: Original strand, 25964436 - 25964482
Alignment:
| Q |
558 |
tgtaagctttaagctgttttcataagctatctaggatagcttatgaa |
604 |
Q |
| |
|
|||||||| |||||||||||||||||||||| ||| |||||||||| |
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| T |
25964436 |
tgtaagctataagctgttttcataagctatcccggaaagcttatgaa |
25964482 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 574 - 607
Target Start/End: Complemental strand, 25479622 - 25479589
Alignment:
| Q |
574 |
ttttcataagctatctaggatagcttatgaaaac |
607 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||| |
|
|
| T |
25479622 |
ttttcataagctctctaggatagcttatgaaaac |
25479589 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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