View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5949-Insertion-4 (Length: 685)
Name: NF5949-Insertion-4
Description: NF5949
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5949-Insertion-4 |
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| [»] chr4 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 337; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 286 - 685
Target Start/End: Complemental strand, 52445330 - 52444943
Alignment:
| Q |
286 |
aaaaaatcaatgattcatactcatacgtatatattaactcatccaaatattcatttgtgaatatgtgcctttcattgatgactaatggagcagtgcaaag |
385 |
Q |
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| T |
52445330 |
aaaaaatcaatgattcatactcatacgtatatattaactcatccaaatattcatttgtgaatatgtgcctttcattgatgactaatggaacagtgcaaag |
52445231 |
T |
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| Q |
386 |
tgaaatatatatatgacgcgtaactaccaagaatgttaacaatactagtggattacggacaaggacatgttgcttatttatctcacaagaatgatgtggt |
485 |
Q |
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| T |
52445230 |
tgaaatatat----gacgcgtaactaccaagaatgttaacaatactagtggattacggacaaggacatgttgcttat----ctcacaagaatgatgtggt |
52445139 |
T |
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| Q |
486 |
caaaatatatgatcgacaactagatagatttggtgtacatttgttggaggaaaaatgtcacaatgagacaaaataaagttattgacaattctgtataacc |
585 |
Q |
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| T |
52445138 |
caaaatatatgatcgacaactagatagatttggtgtacatttgttggatgaaaaatgttacaatgagacaaaataaagttattgacaattctgtataacc |
52445039 |
T |
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| Q |
586 |
gtacgtaccgttgtgggagctggcttaagagaaattcttgcccttgttataactccaaattgtcctaaacctccaagaaccgcgtgatataactctgaat |
685 |
Q |
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| T |
52445038 |
----gtaccgttgtgggagctggcttaagagaaattcttgcccttgttataactccaaattgtcctaaacctccaagaaccgcgtgatataactctgaat |
52444943 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 149 - 229
Target Start/End: Complemental strand, 52445452 - 52445372
Alignment:
| Q |
149 |
aaccttcaaaattagaatacaagattcgagtgttaatttcaagagtgatttttgaatatttatatttaaaaactcgcatat |
229 |
Q |
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| T |
52445452 |
aaccttcaaaattagaatacaagattcgagtgttaatttcaagagtgatttttgaatatttatatttataaactcgcatat |
52445372 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 9 - 75
Target Start/End: Complemental strand, 52445514 - 52445448
Alignment:
| Q |
9 |
attaaccgttcctgatctttggtaaaagcagaaaagtcactgtaaagcaatctgatccacttaacct |
75 |
Q |
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| T |
52445514 |
attaaccgttcctgatctttggtaaaagcagaaaagtcactgtaaagcaatctgatccacttaacct |
52445448 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 604 - 665
Target Start/End: Complemental strand, 17277293 - 17277232
Alignment:
| Q |
604 |
gctggcttaagagaaattcttgcccttgttataactccaaattgtcctaaacctccaagaac |
665 |
Q |
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| T |
17277293 |
gctggctcaagagctattcttgcccttgttataattccaaattgtcctaatcctccaagaac |
17277232 |
T |
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