View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5949-Insertion-7 (Length: 430)
Name: NF5949-Insertion-7
Description: NF5949
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5949-Insertion-7 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 371; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 8 - 430
Target Start/End: Original strand, 31055032 - 31055452
Alignment:
| Q |
8 |
ataatctataatacatgttaatttgtttcacttgcagatacctataaatggttctggtttgattgagtataggtgtcacccctattggaaccaaaaatac |
107 |
Q |
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| T |
31055032 |
ataatctataatacatgttaatttgtttcacttgcagatacctataaatggttctggtttgattgagtataggtgtcacccctattggaaccaaaaatac |
31055131 |
T |
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| Q |
108 |
tgtccgtctcatgaacatgataatacatctcgctgttgtagctgtgaaagattagaggtactaatatannnnnnnnatctcctttttaagattgtggaaa |
207 |
Q |
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| T |
31055132 |
tgtccgtctcatgaacatgataatacatctcgctgttgtagctgtgaaagattagaggtactaatattttttttt--tctcctttttaagatcatggaaa |
31055229 |
T |
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| Q |
208 |
taacattttgctatatatatgtttctcttttctgatatttatatttttaattaccttctccttgaagtctcggggcgaaagatactttagattggacgat |
307 |
Q |
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| T |
31055230 |
taacattttgctatatatatgtttctcttttctgatatttatatttttaattaccttctccttgaagtctcggggcgaaagatactttagattggacgat |
31055329 |
T |
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| Q |
308 |
gaacgaattttgtgctttgaatgcatggaatctgctataacagatactggtgaatgtcaacctctttatcatgctattagagactattatgaaggaatga |
407 |
Q |
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| T |
31055330 |
ggacggattttgtgctttgaatgcatggaatctgctataacagatactggtgaatgtcaacctctttatcatgctattagagactattatgaaggaatga |
31055429 |
T |
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| Q |
408 |
atatgagaatcgatcaacaaatc |
430 |
Q |
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| T |
31055430 |
atatgagaatcgatcaacaaatc |
31055452 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 68; Significance: 3e-30; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 37 - 172
Target Start/End: Complemental strand, 34743589 - 34743454
Alignment:
| Q |
37 |
acttgcagatacctataaatggttctggtttgattgagtataggtgtcacccctattggaaccaaaaatactgtccgtctcatgaacatgataatacatc |
136 |
Q |
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| T |
34743589 |
actttcagattcctataaatgctgctggtttgattgagtatagatgccaccccttttggtcccaaaagtattgtccatctcatgaatatgataacacagc |
34743490 |
T |
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| Q |
137 |
tcgctgttgtagctgtgaaagattagaggtactaat |
172 |
Q |
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| T |
34743489 |
tcgctgctgtagttgtgaaagattagaggtactaat |
34743454 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 317 - 423
Target Start/End: Complemental strand, 34743305 - 34743199
Alignment:
| Q |
317 |
ttgtgctttgaatgcatggaatctgctataacagatactggtgaatgtcaacctctttatcatgctattagagactattatgaaggaatgaatatgagaa |
416 |
Q |
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| T |
34743305 |
ttgtgcttagagtgcatggaatctgctataatggatactggtgactgtcagcctctataccattcaatcagagattattatgaaggaatgcatatgagaa |
34743206 |
T |
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| Q |
417 |
tcgatca |
423 |
Q |
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| T |
34743205 |
ttgatca |
34743199 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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