View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5949_low_1 (Length: 758)

Name: NF5949_low_1
Description: NF5949
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5949_low_1
NF5949_low_1
[»] chr2 (3 HSPs)
chr2 (21-742)||(7240498-7241219)
chr2 (586-619)||(9556247-9556280)
chr2 (586-619)||(10884550-10884583)
[»] chr4 (2 HSPs)
chr4 (68-446)||(48732749-48733130)
chr4 (573-618)||(1706618-1706663)
[»] chr6 (1 HSPs)
chr6 (574-618)||(20370880-20370924)
[»] chr8 (4 HSPs)
chr8 (567-618)||(1433538-1433589)
chr8 (579-618)||(27028833-27028872)
chr8 (579-620)||(25097388-25097429)
chr8 (586-619)||(26473781-26473814)
[»] chr7 (2 HSPs)
chr7 (572-614)||(27548258-27548300)
chr7 (581-618)||(529379-529416)
[»] chr3 (1 HSPs)
chr3 (570-616)||(25964436-25964482)
[»] chr1 (1 HSPs)
chr1 (586-619)||(25479589-25479622)


Alignment Details
Target: chr2 (Bit Score: 702; Significance: 0; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 702; E-Value: 0
Query Start/End: Original strand, 21 - 742
Target Start/End: Complemental strand, 7241219 - 7240498
Alignment:
Q  21 cacaacaggaacatatggaaaacatcttagaaaagagatttctgaggtagttttcacaatcagcaatatcagagatattttaagacatggtgagaaacac 120  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7241219 cacaacaggaacatatggaaaacatcttagaaaagagatttctgaggtagttttcacaatcagcaatatcagagatattttaagacatggtgagaaacac 7241120  T
Q  121 cccttgttacagaaactgagcatagaaattttaacaagtcttgcattggaagatgaggcatcagaaaggattggaggtacaggtggagtgcttaaagaat 220  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7241119 cccttgttacagaaactgagcatagaaattttaacaagtcttgcattggaagatgaggcatcagaaaggattggaggtacaggtggagtgcttaaagaat 7241020  T
Q  221 tgttcaacatatttttcagacaaaacattcctgaaaaccagaaagatgtaacaactgttgctggtgaggccttatcaatgctggcattagaaagcaagag 320  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7241019 tgttcaacatatttttcagacaaaacattcctgaaaaccagaaagatgtaacaactgttgctggtgaggccttatcaatgctggcattagaaagcaagag 7240920  T
Q  321 caactgtcatcggattttgaagttgagagtgctcgaaaggcttattgaagcattgaaagtaccgctgattcgtgtcagtgccgctagaattctaagaaat 420  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  7240919 caactgtcatcggattttgaagttgagagtgctcgaaaggcttattgaagcattgaaagtaccactgattcgtgtcagtgccgctagaattctaagaaat 7240820  T
Q  421 ttatgcaactacagtggatcagaatgcttcaaccagttaaagggagttacagcagcagctccaacagtaagtgttattttcaatttttattaattaaaca 520  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7240819 ttatgcaactacagtggatcagaatgcttcaaccagttaaagggagttacagcagcagctccaacagtaagtgttattttcaatttttattaattaaaca 7240720  T
Q  521 attacaagttttatcaaccaagttcaagcatgtgagattcgtaaagttatgtaagctttaagctgttttcataagctatctaggatagcttatgaaaact 620  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7240719 attacaagttttatcaaccaagtccaagcatgtgagattcgtaaagttatgtaagctttaagctgttttcataagctatctaggatagcttatgaaaact 7240620  T
Q  621 ctatgaaaatggcctatggacattttagaagctcttcacaatttcataggctctatcaaatggtctttcaagagcttatgtccataaatatgctaaaata 720  Q
     | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  7240619 atctgaaaatggcctatggacattttagaagctcttcacaatttcataggctctatcaaatggtctttcaagagcttatgtccatagatatgctaaaata 7240520  T
Q  721 agtcgattcaaatagaccctat 742  Q
    ||||||||||||||||||||||    
T  7240519 agtcgattcaaatagaccctat 7240498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 586 - 619
Target Start/End: Complemental strand, 9556280 - 9556247
Alignment:
Q  586 ttttcataagctatctaggatagcttatgaaaac 619  Q
    |||||||||||| |||||||||||||||||||||    
T  9556280 ttttcataagctttctaggatagcttatgaaaac 9556247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 586 - 619
Target Start/End: Original strand, 10884550 - 10884583
Alignment:
Q  586 ttttcataagctatctaggatagcttatgaaaac 619  Q
    |||||||||||| |||||||||||||||||||||    
T  10884550 ttttcataagctctctaggatagcttatgaaaac 10884583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 64; Significance: 1e-27; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 68 - 446
Target Start/End: Original strand, 48732749 - 48733130
Alignment:
Q  68 tagttttcacaatcagcaatatcagagatattttaagacatggtgagaaacaccccttgttacagaaactgagcatagaaattttaacaagtcttgcatt 167  Q
    |||| ||||| ||||| ||||| |||||||||||||  ||||| || | ||| ||  |  ||||||||||||||||||| ||||||||||  || |||||    
T  48732749 tagtgttcactatcagtaatattagagatattttaaagcatggagaaagacatccacttctacagaaactgagcatagagattttaacaaacctagcatt 48732848  T
Q  168 ggaagatgaggcatcagaaaggattggaggtacaggtggagtgcttaaagaattgttcaacatatttttcagacaaaacattcctgaaaaccagaaa--- 264  Q
     || ||||| ||| |||| || ||||| |||||||||||| ||||| ||||||||||||||||| |||||| ||| | |   || ||| |   ||||       
T  48732849 agatgatgatgcaacagagagaattggtggtacaggtggaatgcttcaagaattgttcaacatacttttcaaacacagcgaaccagaagattggaaacat 48732948  T
Q  265 gatgtaacaactgttgctggtgaggccttatcaatgctggcattagaaagcaagagcaactgtcatcggattttgaagttgagagtgctcgaaaggctta 364  Q
    | |||||||  || ||| |  |||||| || | ||| ||||||||||||||||||| ||||||||| | ||||||||| ||| | | || | |||||||     
T  48732949 ggtgtaacagttgctgccgccgaggccctagcgatgttggcattagaaagcaagagtaactgtcattgaattttgaagctgaaattacttggaaggcttg 48733048  T
Q  365 ttgaagcattgaaagtaccgctgattcgtgtcagtgccgctagaattctaagaaatttatgcaactacagtggatcagaatg 446  Q
    | ||| |||||||||  ||| || ||||  |||  || |||  |||||||||||||||||||| ||| ||||| ||||||||    
T  48733049 tagaatcattgaaagatccgttgcttcgcatcaaggcagctgaaattctaagaaatttatgcatctatagtggctcagaatg 48733130  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 573 - 618
Target Start/End: Original strand, 1706618 - 1706663
Alignment:
Q  573 aagctttaagctgttttcataagctatctaggatagcttatgaaaa 618  Q
    ||||| |||||||||||||||| |||||| ||| ||||||||||||    
T  1706618 aagctataagctgttttcataaactatcttggacagcttatgaaaa 1706663  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 574 - 618
Target Start/End: Original strand, 20370880 - 20370924
Alignment:
Q  574 agctttaagctgttttcataagctatctaggatagcttatgaaaa 618  Q
    |||||||||||||||||||| |||||||||||  |||||||||||    
T  20370880 agctttaagctgttttcatatgctatctaggagtgcttatgaaaa 20370924  T

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Target: chr8 (Bit Score: 32; Significance: 0.00000002; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 567 - 618
Target Start/End: Original strand, 1433538 - 1433589
Alignment:
Q  567 ttatgtaagctttaagctgttttcataagctatctaggatagcttatgaaaa 618  Q
    |||| |||||||||||| ||||||||||||||||  ||| ||||||||||||    
T  1433538 ttatttaagctttaagcagttttcataagctatcctggagagcttatgaaaa 1433589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 579 - 618
Target Start/End: Original strand, 27028833 - 27028872
Alignment:
Q  579 taagctgttttcataagctatctaggatagcttatgaaaa 618  Q
    ||||||||||||||||||||||| ||| ||||||||||||    
T  27028833 taagctgttttcataagctatcttggagagcttatgaaaa 27028872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 579 - 620
Target Start/End: Original strand, 25097388 - 25097429
Alignment:
Q  579 taagctgttttcataagctatctaggatagcttatgaaaact 620  Q
    ||||||||||||||||||||||  ||| ||||||||||||||    
T  25097388 taagctgttttcataagctatcctggagagcttatgaaaact 25097429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 586 - 619
Target Start/End: Original strand, 26473781 - 26473814
Alignment:
Q  586 ttttcataagctatctaggatagcttatgaaaac 619  Q
    |||||||||||| |||||||||||||||||||||    
T  26473781 ttttcataagctctctaggatagcttatgaaaac 26473814  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000007; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 572 - 614
Target Start/End: Original strand, 27548258 - 27548300
Alignment:
Q  572 taagctttaagctgttttcataagctatctaggatagcttatg 614  Q
    |||||| ||||||||||||||||||||||| ||||| ||||||    
T  27548258 taagctataagctgttttcataagctatcttggataacttatg 27548300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 581 - 618
Target Start/End: Original strand, 529379 - 529416
Alignment:
Q  581 agctgttttcataagctatctaggatagcttatgaaaa 618  Q
    ||||||||||||||||||||| ||| ||||||||||||    
T  529379 agctgttttcataagctatcttggagagcttatgaaaa 529416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 570 - 616
Target Start/End: Original strand, 25964436 - 25964482
Alignment:
Q  570 tgtaagctttaagctgttttcataagctatctaggatagcttatgaa 616  Q
    |||||||| ||||||||||||||||||||||  ||| ||||||||||    
T  25964436 tgtaagctataagctgttttcataagctatcccggaaagcttatgaa 25964482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 586 - 619
Target Start/End: Complemental strand, 25479622 - 25479589
Alignment:
Q  586 ttttcataagctatctaggatagcttatgaaaac 619  Q
    |||||||||||| |||||||||||||||||||||    
T  25479622 ttttcataagctctctaggatagcttatgaaaac 25479589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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