View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5949_low_10 (Length: 240)
Name: NF5949_low_10
Description: NF5949
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5949_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 20 - 222
Target Start/End: Original strand, 47315227 - 47315429
Alignment:
| Q |
20 |
gtcaaatagtggctatagtgccctagcgtagtcgaatctgaacaaaattttattgttctgtgatatgcaatttaatgcaaattattgttgattaaatttg |
119 |
Q |
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| T |
47315227 |
gtcaaatagcggctatagtgccctagcgtagtcgaatctgaacaaaattttattgttctgtgatatgcaatttaatgcaaattattgttgattaaatttg |
47315326 |
T |
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| Q |
120 |
agcaaaccgctatttcctgagatccatgattgacaacagttgatgaattttccatttgaggtttgtataggttatcttttgtccttgtgctttccatgta |
219 |
Q |
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| T |
47315327 |
agcataccgctatttcctgagatccatgattgacaacagttgatgaattttccatttgaggtttgtataggttatcttttgtccttgtgctttccatgta |
47315426 |
T |
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| Q |
220 |
cct |
222 |
Q |
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||| |
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| T |
47315427 |
cct |
47315429 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 69 - 107
Target Start/End: Original strand, 17504953 - 17504991
Alignment:
| Q |
69 |
ttattgttctgtgatatgcaatttaatgcaaattattgt |
107 |
Q |
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| T |
17504953 |
ttattgttctgtgatatgcaatttagtgcaaaatattgt |
17504991 |
T |
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