View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5949_low_11 (Length: 238)
Name: NF5949_low_11
Description: NF5949
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5949_low_11 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 148; Significance: 3e-78; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 49 - 238
Target Start/End: Original strand, 5544584 - 5544777
Alignment:
| Q |
49 |
tacacagattaggagtggatatgttgaggt---ccactattaattggtgtagagttggccgttggtccactaacctgtggttgattactgctaagtgcct |
145 |
Q |
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| T |
5544584 |
tacacagattaggagttgatatgttgaggtggtccactattgattggtgtagcgttgcccgttggtccactaacctgtggttgattactgctaagtgcct |
5544683 |
T |
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| Q |
146 |
aacttagggaagactaactttattttatgatgatggtgaagaaatgataaaagacaattgaaaaattccat-aaattaataatcctgtattttt |
238 |
Q |
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| T |
5544684 |
aacttagggaagactaactttattttatgatgatggtgaagaaatgataaaagactattgaaaaattccataaaaataataatcctgtattttt |
5544777 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 32
Target Start/End: Original strand, 5544533 - 5544564
Alignment:
| Q |
1 |
atactcccatataacatacctaatttcttcat |
32 |
Q |
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| T |
5544533 |
atactcccatataacatacctaatttcttcat |
5544564 |
T |
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