View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5949_low_12 (Length: 235)
Name: NF5949_low_12
Description: NF5949
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5949_low_12 |
 | |
|
| [»] scaffold0475 (1 HSPs) |
| | |
|
| [»] scaffold0288 (1 HSPs) |
| | |
|
| [»] chr5 (1 HSPs) |
| |
|
| [»] scaffold0199 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 187; Significance: 1e-101; HSPs: 30)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 9 - 231
Target Start/End: Original strand, 4488733 - 4488955
Alignment:
| Q |
9 |
gaaaaatatcaaagatgagtaactttgaagagaaaaagccacatgcagtgttaactccatttccaattcaaggccatatcaatccattgttgaaactagg |
108 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||| ||||||||||||||||| |||||||||||||||| |
|
|
| T |
4488733 |
gaaaaatatcaaagatgagtaactttgaagagagaaagccacatgcagtgttaacaccatttccagttcaaggccatatcaatgcattgttgaaactagg |
4488832 |
T |
|
| Q |
109 |
aaaattacttcaccttagaggatttcacataacctttgtcaacaccgaatacaatcacaaacgcttgctcaaatcaagaggtccaaatgcctttgatggt |
208 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4488833 |
aaaactacttcaccttagaggatttcacataacctttgtcaacactgaatacaatcacaaacgcttgctcaaatcaagaggtccaaatgcctttgatggt |
4488932 |
T |
|
| Q |
209 |
ttcaatgattttacctttgagac |
231 |
Q |
| |
|
|| | |||||||| ||||||||| |
|
|
| T |
4488933 |
ttaactgattttagctttgagac |
4488955 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 13 - 228
Target Start/End: Complemental strand, 4482453 - 4482238
Alignment:
| Q |
13 |
aatatcaaagatgagtaactttgaagagaaaaagccacatgcagtgttaactccatttccaattcaaggccatatcaatccattgttgaaactaggaaaa |
112 |
Q |
| |
|
||||||||||||||||||||||| ||| ||||| |||||||||||||| |||||||||||| |||||||||||||||| ||||||||||| |||||||| |
|
|
| T |
4482453 |
aatatcaaagatgagtaactttgcagaaaaaaaaccacatgcagtgttgactccatttccagctcaaggccatatcaatgcattgttgaaaataggaaaa |
4482354 |
T |
|
| Q |
113 |
ttacttcaccttagaggatttcacataacctttgtcaacaccgaatacaatcacaaacgcttgctcaaatcaagaggtccaaatgcctttgatggtttca |
212 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| |||||||| |||||||||||||||| |
|
|
| T |
4482353 |
ctacttcaccttagaggctttcacataacctttgtcaacaccgaatacaatcacaaacgtttgctaaaatcaaggggtccaaaagcctttgatggtttca |
4482254 |
T |
|
| Q |
213 |
atgattttacctttga |
228 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
4482253 |
ctgattttacctttga |
4482238 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 9 - 231
Target Start/End: Complemental strand, 3173595 - 3173373
Alignment:
| Q |
9 |
gaaaaatatcaaagatgagtaactttgaagagaaaaagccacatgcagtgttaactccatttccaattcaaggccatatcaatccattgttgaaactagg |
108 |
Q |
| |
|
||||||||||||||||||||||||||| | ||| ||| |||||||||||||||||||||| |||| ||||||||||||||||| ||||||||||||||| |
|
|
| T |
3173595 |
gaaaaatatcaaagatgagtaactttgcaaagagaaaaccacatgcagtgttaactccatatccagttcaaggccatatcaatgcattgttgaaactagc |
3173496 |
T |
|
| Q |
109 |
aaaattacttcaccttagaggatttcacataacctttgtcaacaccgaatacaatcacaaacgcttgctcaaatcaagaggtccaaatgcctttgatggt |
208 |
Q |
| |
|
|||| |||||||| ||||||| ||||||||||||||||| ||||| ||||||||||||||||| ||||||||||||| ||||||||||||||||||||| |
|
|
| T |
3173495 |
aaaactacttcactttagaggctttcacataacctttgtaaacactgaatacaatcacaaacggttgctcaaatcaaagggtccaaatgcctttgatggt |
3173396 |
T |
|
| Q |
209 |
ttcaatgattttacctttgagac |
231 |
Q |
| |
|
||||||||||||| ||||||||| |
|
|
| T |
3173395 |
ttcaatgattttaactttgagac |
3173373 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 9 - 231
Target Start/End: Complemental strand, 4576047 - 4575825
Alignment:
| Q |
9 |
gaaaaatatcaaagatgagtaactttgaagagaaaaagccacatgcagtgttaactccatttccaattcaaggccatatcaatccattgttgaaactagg |
108 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| ||| |
|
|
| T |
4576047 |
gaaaaatatcaatcatgagtaactttgaagagaaaaagccacatgcagtgttaactccatttccagttcaaggccatatcaatgcattgttgaaaatagc |
4575948 |
T |
|
| Q |
109 |
aaaattacttcaccttagaggatttcacataacctttgtcaacaccgaatacaatcacaaacgcttgctcaaatcaagaggtccaaatgcctttgatggt |
208 |
Q |
| |
|
|||| | |||||||||||||| ||||||||||||||||| ||||| ||||||||||||||||| |||||||||||||||||| |||||||||||||||| |
|
|
| T |
4575947 |
aaaactgcttcaccttagaggctttcacataacctttgttaacactgaatacaatcacaaacgtttgctcaaatcaagaggtgaaaatgcctttgatggt |
4575848 |
T |
|
| Q |
209 |
ttcaatgattttacctttgagac |
231 |
Q |
| |
|
|||| ||| |||| ||||||||| |
|
|
| T |
4575847 |
ttcactgactttaactttgagac |
4575825 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 22 - 235
Target Start/End: Complemental strand, 4627732 - 4627516
Alignment:
| Q |
22 |
gatgagtaactttg--aagagaaa-aagccacatgcagtgttaactccatttccaattcaaggccatatcaatccattgttgaaactaggaaaattactt |
118 |
Q |
| |
|
|||||||||||||| ||||||| ||||||||||| ||||| | |||||||||| ||||||||||||||||||||||||||| ||||| |||||||||| |
|
|
| T |
4627732 |
gatgagtaactttgcaaagagaatcaagccacatgctgtgttgattccatttccacttcaaggccatatcaatccattgttgatactagcaaaattactt |
4627633 |
T |
|
| Q |
119 |
caccttagaggatttcacataacctttgtcaacaccgaatacaatcacaaacgcttgctcaaatcaagaggtccaaatgcctttgatggtttcaatgatt |
218 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||| ||||||||||||||||||| |||||| |
|
|
| T |
4627632 |
caccttagaggctttcacataacctttgtcaacactgaatacaatcacaaacgtttgctcaaatcaagaggtgaaaatgcctttgatggtttcgatgatt |
4627533 |
T |
|
| Q |
219 |
ttacctttgagaccata |
235 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
4627532 |
ttacctttgagaccata |
4627516 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 44 - 231
Target Start/End: Complemental strand, 4517897 - 4517710
Alignment:
| Q |
44 |
aagccacatgcagtgttaactccatttccaattcaaggccatatcaatccattgttgaaactaggaaaattacttcaccttagaggatttcacataacct |
143 |
Q |
| |
|
||||||||||||||| ||||||||| |||| ||||||||||||||||||| ||||| ||||||| |||| | ||||| |||||||| ||||||||||||| |
|
|
| T |
4517897 |
aagccacatgcagtgataactccatatccacttcaaggccatatcaatccgttgttaaaactagcaaaacttcttcatcttagaggctttcacataacct |
4517798 |
T |
|
| Q |
144 |
ttgtcaacaccgaatacaatcacaaacgcttgctcaaatcaagaggtccaaatgcctttgatggtttcaatgattttacctttgagac |
231 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||| |
|
|
| T |
4517797 |
ttgtcaacaccgaatacaatcacaaacgtttgctcaaatcaagaggtccaaaagcctttgatggtttcactgattttacctttgagac |
4517710 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 41 - 231
Target Start/End: Complemental strand, 4558685 - 4558495
Alignment:
| Q |
41 |
aaaaagccacatgcagtgttaactccatttccaattcaaggccatatcaatccattgttgaaactaggaaaattacttcaccttagaggatttcacataa |
140 |
Q |
| |
|
||||| |||||||| ||||||| ||||| |||| ||||||||||||||||||||||||||||||||| |||| | ||||||||||||||||||||||||| |
|
|
| T |
4558685 |
aaaaaaccacatgctgtgttaattccatatccagttcaaggccatatcaatccattgttgaaactagcaaaacttcttcaccttagaggatttcacataa |
4558586 |
T |
|
| Q |
141 |
cctttgtcaacaccgaatacaatcacaaacgcttgctcaaatcaagaggtccaaatgcctttgatggtttcaatgattttacctttgagac |
231 |
Q |
| |
|
||| ||| ||||| |||||||| |||||||| |||||||| ||||||||||||||||||||||||||||||| |||||||| ||||||||| |
|
|
| T |
4558585 |
cctatgtaaacactgaatacaaccacaaacggttgctcaagtcaagaggtccaaatgcctttgatggtttcactgattttagctttgagac |
4558495 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 47 - 229
Target Start/End: Original strand, 4612292 - 4612474
Alignment:
| Q |
47 |
ccacatgcagtgttaactccatttccaattcaaggccatatcaatccattgttgaaactaggaaaattacttcaccttagaggatttcacataacctttg |
146 |
Q |
| |
|
|||||||||||||||| ||||| |||| |||||||||||||||||||||| | ||||||| |||| | |||||||||||||| ||||||||||| || | |
|
|
| T |
4612292 |
ccacatgcagtgttaattccatatccagttcaaggccatatcaatccattaatcaaactagcaaaacttcttcaccttagaggctttcacataacattcg |
4612391 |
T |
|
| Q |
147 |
tcaacaccgaatacaatcacaaacgcttgctcaaatcaagaggtccaaatgcctttgatggtttcaatgattttacctttgag |
229 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||| |
|
|
| T |
4612392 |
tcaacaccgaatacaatcacaaacgcttgctcaaatcaagaggtccaaatgcctttgttggtttcactgattttacctttgag |
4612474 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 16 - 231
Target Start/End: Complemental strand, 4507496 - 4507281
Alignment:
| Q |
16 |
atcaaagatgagtaactttgaagagaaaaagccacatgcagtgttaactccatttccaattcaaggccatatcaatccattgttgaaactaggaaaatta |
115 |
Q |
| |
|
||||||||||||||| |||| | ||| ||| |||||||| ||||| | ||||| ||||| |||||||||||||||||||||||| ||||||| || | |
|
|
| T |
4507496 |
atcaaagatgagtaattttgcaaagagaaaaccacatgctgtgttgattccatatccaactcaaggccatatcaatccattgttcaaactagctaagctt |
4507397 |
T |
|
| Q |
116 |
cttcaccttagaggatttcacataacctttgtcaacaccgaatacaatcacaaacgcttgctcaaatcaagaggtccaaatgcctttgatggtttcaatg |
215 |
Q |
| |
|
||||||||| |||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| || |
|
|
| T |
4507396 |
cttcaccttcgaggctttcacataacctttgttaacaccgaatacaatcacaaacgcttgctcaaatcaagaggtgaaaatgcctttgatggtttcactg |
4507297 |
T |
|
| Q |
216 |
attttacctttgagac |
231 |
Q |
| |
|
|||||| ||||||||| |
|
|
| T |
4507296 |
attttaactttgagac |
4507281 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 49 - 228
Target Start/End: Complemental strand, 4603662 - 4603483
Alignment:
| Q |
49 |
acatgcagtgttaactccatttccaattcaaggccatatcaatccattgttgaaactaggaaaattacttcaccttagaggatttcacataacctttgtc |
148 |
Q |
| |
|
|||||| ||||| | ||||| |||| |||||||||||||||||||| |||||||||||| |||| || |||||||||||||||||||||||||||||||| |
|
|
| T |
4603662 |
acatgctgtgttgattccatatccacttcaaggccatatcaatccaatgttgaaactagcaaaactatttcaccttagaggatttcacataacctttgtc |
4603563 |
T |
|
| Q |
149 |
aacaccgaatacaatcacaaacgcttgctcaaatcaagaggtccaaatgcctttgatggtttcaatgattttacctttga |
228 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||| |||||||| || || |||| |||||||| |||||| |
|
|
| T |
4603562 |
aacaccgaatacaatcacaaacgtttgctcaaatcaagaggtcctaatgccttagacggcttcactgattttagctttga |
4603483 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 41 - 231
Target Start/End: Complemental strand, 4581574 - 4581384
Alignment:
| Q |
41 |
aaaaagccacatgcagtgttaactccatttccaattcaaggccatatcaatccattgttgaaactaggaaaattacttcaccttagaggatttcacataa |
140 |
Q |
| |
|
|||||||||||||||||||| | ||||| |||| ||||||| ||||||| |||||| | | ||||| ||| | |||||||||||||| |||||||||| |
|
|
| T |
4581574 |
aaaaagccacatgcagtgttgattccatatccacttcaaggacatatcactccattaataacactagcaaagcttcttcaccttagaggctttcacataa |
4581475 |
T |
|
| Q |
141 |
cctttgtcaacaccgaatacaatcacaaacgcttgctcaaatcaagaggtccaaatgcctttgatggtttcaatgattttacctttgagac |
231 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||| ||||||||||||||||| |
|
|
| T |
4581474 |
cctttgtcaacaccgaatacaatcacaaacgcttgctcaaatcaagaggtccaaaagcgtttgatggtttcaccgattttacctttgagac |
4581384 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 10 - 127
Target Start/End: Original strand, 4497782 - 4497899
Alignment:
| Q |
10 |
aaaaatatcaaagatgagtaactttgaagagaaaaagccacatgcagtgttaactccatttccaattcaaggccatatcaatccattgttgaaactagga |
109 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
4497782 |
aaaaatatcaaagatgagtaactttgaagagaaaaagccacatgcagtgttaactccatttccaatttaaggccatatcaatccattgttgaaactagga |
4497881 |
T |
|
| Q |
110 |
aaattacttcaccttaga |
127 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
4497882 |
aaattacttcaccttaga |
4497899 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #13
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 123 - 235
Target Start/End: Original strand, 4502943 - 4503055
Alignment:
| Q |
123 |
ttagaggatttcacataacctttgtcaacaccgaatacaatcacaaacgcttgctcaaatcaagaggtccaaatgcctttgatggtttcaatgattttac |
222 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4502943 |
ttagaggatttcacataacctttgtcaacaccgaatacaatcacaaacgcttgctcaaatcaagaggtccaaatgcctttgatggtttcaatgattttac |
4503042 |
T |
|
| Q |
223 |
ctttgagaccata |
235 |
Q |
| |
|
||||||||||||| |
|
|
| T |
4503043 |
ctttgagaccata |
4503055 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #14
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 9 - 231
Target Start/End: Complemental strand, 4562258 - 4562032
Alignment:
| Q |
9 |
gaaaaatatcaaagatgagtaactttgaagagaaaaagccacatgcagtgttaa----ctccatttccaattcaaggccatatcaatccattgttgaaac |
104 |
Q |
| |
|
||||||||||||| |||| |||||||||||||||| ||||||||||||||||| ||||||||||| ||||||| ||||||||| ||||||||||| |
|
|
| T |
4562258 |
gaaaaatatcaaacatgaccaactttgaagagaaaaggccacatgcagtgttaattaactccatttccagttcaaggtcatatcaatgcattgttgaaaa |
4562159 |
T |
|
| Q |
105 |
taggaaaattacttcaccttagaggatttcacat-aacctttgtcaacaccgaatacaatcacaaacgcttgctcaaatcaagaggtccaaatgcctttg |
203 |
Q |
| |
|
||| |||| | |||||||| ||||| |||||||| ||||||||| ||||| ||||||||||||||||| ||||| |||||||||||| ||||||||||| |
|
|
| T |
4562158 |
tagcaaaactgcttcacctaagaggctttcacataaacctttgttaacactgaatacaatcacaaacgtttgct-aaatcaagaggtgaaaatgcctttg |
4562060 |
T |
|
| Q |
204 |
atggtttcaatgattttacctttgagac |
231 |
Q |
| |
|
||||||||| ||| |||| ||||||||| |
|
|
| T |
4562059 |
atggtttcactgactttaactttgagac |
4562032 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #15
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 60 - 231
Target Start/End: Complemental strand, 4569611 - 4569444
Alignment:
| Q |
60 |
taactccatttccaattcaaggccatatcaatccattgttgaaactaggaaaattacttcaccttagaggatttcacataacctttgtcaacaccgaata |
159 |
Q |
| |
|
||||||||| |||| |||||||||||||||||||||| |||||||||| |||| | |||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
4569611 |
taactccatatccacttcaaggccatatcaatccattattgaaactagcaaaacttcttcaccttagaggctttcacataacctttgtcaacaccga--- |
4569515 |
T |
|
| Q |
160 |
caatcacaaacgcttgctcaaatcaagaggtccaaatgcctttgatggtttcaatgattttacctttgagac |
231 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||| |
|
|
| T |
4569514 |
-aatcacaaacatttgctcaaatcaagaggtccaaaagcctttgatggtttcactgattttacctttgagac |
4569444 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #16
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 41 - 230
Target Start/End: Complemental strand, 4572526 - 4572337
Alignment:
| Q |
41 |
aaaaagccacatgcagtgttaactccatttccaattcaaggccatatcaatccattgttgaaactaggaaaattacttcaccttagaggatttcacataa |
140 |
Q |
| |
|
||||| |||||||| ||||||| |||| |||| |||||||||||||||||||||||||| |||||| |||||| |||||||||||||| |||||||||| |
|
|
| T |
4572526 |
aaaaaaccacatgctgtgttaatcccatatccagttcaaggccatatcaatccattgttgcaactagcaaaatttcttcaccttagaggttttcacataa |
4572427 |
T |
|
| Q |
141 |
cctttgtcaacaccgaatacaatcacaaacgcttgctcaaatcaagaggtccaaatgcctttgatggtttcaatgattttacctttgaga |
230 |
Q |
| |
|
||| ||| ||||| ||||||||||||||||| |||||||| |||||||||| |||||||||||||||||||| |||||| |||||||| |
|
|
| T |
4572426 |
cctatgtaaacactgaatacaatcacaaacggttgctcaagtcaagaggtcaaaatgcctttgatggtttcaccaattttaactttgaga |
4572337 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #17
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 43 - 235
Target Start/End: Original strand, 4265627 - 4265819
Alignment:
| Q |
43 |
aaagccacatgcagtgttaactccatttccaattcaaggccatatcaatccattgttgaaactaggaaaattacttcaccttagaggatttcacataacc |
142 |
Q |
| |
|
|||||||||||| ||||| | |||| |||| ||||||||||||||||| ||||||| || |||||||| | |||||||||||||| |||||||||||| |
|
|
| T |
4265627 |
aaagccacatgctgtgttgattccagctccatttcaaggccatatcaatgcattgttcaatctaggaaagcttcttcaccttagaggctttcacataacc |
4265726 |
T |
|
| Q |
143 |
tttgtcaacaccgaatacaatcacaaacgcttgctcaaatcaagaggtccaaatgcctttgatggtttcaatgattttacctttgagaccata |
235 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||| | |||||||||||| ||| |||| |||||||||||| |
|
|
| T |
4265727 |
tttgtcaacactgaatacaatcacaaacgcttgctcaaatcaagaggtccaaattctcttgatggtttcagtgactttaagtttgagaccata |
4265819 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #18
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 23 - 234
Target Start/End: Complemental strand, 4462785 - 4462574
Alignment:
| Q |
23 |
atgagtaactttgaagagaaaaagccacatgcagtgttaactccatttccaattcaaggccatatcaatccattgttgaaactaggaaaattacttcacc |
122 |
Q |
| |
|
|||||||| |||| | ||| |||||||||||| ||||| | ||||| |||| ||||||||||||||| |||||||||||||||||||| ||||||||| |
|
|
| T |
4462785 |
atgagtaattttgcaaagacaaagccacatgctgtgttgattccatgtccatcccaaggccatatcaatgcattgttgaaactaggaaaactacttcacc |
4462686 |
T |
|
| Q |
123 |
ttagaggatttcacataacctttgtcaacaccgaatacaatcacaaacgcttgctcaaatcaagaggtccaaatgcctttgatggtttcaatgattttac |
222 |
Q |
| |
|
||||||| ||||||||||||||||||||||| |||||||||||||| |||||||||| ||||||||||| ||| | | |||||||||| ||| |||| |
|
|
| T |
4462685 |
ttagaggttttcacataacctttgtcaacactgaatacaatcacaattgcttgctcaattcaagaggtcctaattctctagatggtttcactgactttaa |
4462586 |
T |
|
| Q |
223 |
ctttgagaccat |
234 |
Q |
| |
|
|||||||||||| |
|
|
| T |
4462585 |
ctttgagaccat |
4462574 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #19
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 64 - 230
Target Start/End: Complemental strand, 4618838 - 4618672
Alignment:
| Q |
64 |
tccatttccaattcaaggccatatcaatccattgttgaaactaggaaaattacttcaccttagaggatttcacataacctttgtcaacaccgaatacaat |
163 |
Q |
| |
|
||||| |||| ||||||||||||||||||||||||| ||||||| ||| | |||||||||||||| ||||||||||||||||| ||||||||||||||| |
|
|
| T |
4618838 |
tccatatccagttcaaggccatatcaatccattgttcaaactagcaaagcttcttcaccttagaggctttcacataacctttgttaacaccgaatacaat |
4618739 |
T |
|
| Q |
164 |
cacaaacgcttgctcaaatcaagaggtccaaatgcctttgatggtttcaatgattttacctttgaga |
230 |
Q |
| |
|
|||||||||||||||||||||||||||||||| || ||||||||||||| || |||| |||||||| |
|
|
| T |
4618738 |
cacaaacgcttgctcaaatcaagaggtccaaaggcttttgatggtttcacggactttaactttgaga |
4618672 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #20
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 47 - 231
Target Start/End: Original strand, 4513553 - 4513737
Alignment:
| Q |
47 |
ccacatgcagtgttaactccatttccaattcaaggccatatcaatccattgttgaaactaggaaaattacttcaccttagaggatttcacataacctttg |
146 |
Q |
| |
|
|||||||| ||||| | ||||| |||| |||||||||||||||||||| |||| | | ||| |||| |||||||||||||||| |||||||||||||||| |
|
|
| T |
4513553 |
ccacatgctgtgttgattccatatccacttcaaggccatatcaatccaatgttcagattagcaaaactacttcaccttagaggctttcacataacctttg |
4513652 |
T |
|
| Q |
147 |
tcaacaccgaatacaatcacaaacgcttgctcaaatcaagaggtccaaatgcctttgatggtttcaatgattttacctttgagac |
231 |
Q |
| |
|
| ||||||||||||||||||||||| |||||||||||||||||||| ||||| ||||||||||||| |||||| ||||||||| |
|
|
| T |
4513653 |
ttaacaccgaatacaatcacaaacgtttgctcaaatcaagaggtcctaatgcttttgatggtttcaccgattttcgctttgagac |
4513737 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #21
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 15 - 235
Target Start/End: Complemental strand, 4594596 - 4594376
Alignment:
| Q |
15 |
tatcaaagatgagtaactttgaagagaaaaagccacatgcagtgttaactccatttccaattcaaggccatatcaatccattgttgaaactaggaaaatt |
114 |
Q |
| |
|
||||||||||| | ||||||| | | | ||| |||||||| ||||| | |||| |||| ||||||| ||||| ||||||||||| ||||| | |||| | |
|
|
| T |
4594596 |
tatcaaagatgggaaactttgcaaacagaaaaccacatgctgtgttgattccagctccacttcaaggacatataaatccattgttcaaacttgcaaaact |
4594497 |
T |
|
| Q |
115 |
acttcaccttagaggatttcacataacctttgtcaacaccgaatacaatcacaaacgcttgctcaaatcaagaggtccaaatgcctttgatggtttcaat |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| ||||||||||||||||||||||||||||| ||||||||| | |
|
|
| T |
4594496 |
tcttcaccttagaggatttcacataacctttgtcaacactgaatacaatcataaacgtttgctcaaatcaagaggtccaaatgccttagatggtttccct |
4594397 |
T |
|
| Q |
215 |
gattttacctttgagaccata |
235 |
Q |
| |
|
| ||||| |||||| |||||| |
|
|
| T |
4594396 |
ggttttagctttgaaaccata |
4594376 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #22
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 41 - 231
Target Start/End: Original strand, 4258744 - 4258934
Alignment:
| Q |
41 |
aaaaagccacatgcagtgttaactccatttccaattcaaggccatatcaatccattgttgaaactaggaaaattacttcaccttagaggatttcacataa |
140 |
Q |
| |
|
|||||||||||||| ||||| | ||||| |||| |||||||||||||||||||||||| ||||||| || | |||||| ||| ||| |||||||||| |
|
|
| T |
4258744 |
aaaaagccacatgctgtgttgattccatatccagctcaaggccatatcaatccattgttcaaactagctaagcttcttcactttaaaggttttcacataa |
4258843 |
T |
|
| Q |
141 |
cctttgtcaacaccgaatacaatcacaaacgcttgctcaaatcaagaggtccaaatgcctttgatggtttcaatgattttacctttgagac |
231 |
Q |
| |
|
||||||||||||| ||||| ||||||||||| |||||||||||||||||| ||||||| |||||||||||| |||||||||||||||||| |
|
|
| T |
4258844 |
cctttgtcaacactgaatataatcacaaacgtttgctcaaatcaagaggtgaaaatgccgttgatggtttcattgattttacctttgagac |
4258934 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #23
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 50 - 231
Target Start/End: Complemental strand, 4587183 - 4587002
Alignment:
| Q |
50 |
catgcagtgttaactccatttccaattcaaggccatatcaatccattgttgaaactaggaaaattacttcaccttagaggatttcacataacctttgtca |
149 |
Q |
| |
|
||||| ||||||| |||| |||| ||||||||||||||||||||||||||||||||| ||| | ||||||||| |||||||||||||||||||||| | |
|
|
| T |
4587183 |
catgctgtgttaatcccatctccagttcaaggccatatcaatccattgttgaaactagctaaacttcttcaccttcgaggatttcacataacctttgtaa |
4587084 |
T |
|
| Q |
150 |
acaccgaatacaatcacaaacgcttgctcaaatcaagaggtccaaatgcctttgatggtttcaatgattttacctttgagac |
231 |
Q |
| |
|
|||| ||||||||||||||||| ||||| || ||||||| ||||||||||||||||| ||| | |||||||| ||||||||| |
|
|
| T |
4587083 |
acactgaatacaatcacaaacggttgcttaagtcaagagctccaaatgcctttgatgatttaactgattttagctttgagac |
4587002 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #24
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 41 - 234
Target Start/End: Complemental strand, 4623867 - 4623674
Alignment:
| Q |
41 |
aaaaagccacatgcagtgttaactccatttccaattcaaggccatatcaatccattgttgaaactaggaaaattacttcaccttagaggatttcacataa |
140 |
Q |
| |
|
|||||||||||||| ||||| | | ||| |||| ||||||| ||||||||||||||||| ||||||| ||| | ||| |||||| ||| |||||||||| |
|
|
| T |
4623867 |
aaaaagccacatgctgtgttgattgcatatccagttcaaggtcatatcaatccattgttcaaactagcaaagcttctttaccttaaaggctttcacataa |
4623768 |
T |
|
| Q |
141 |
cctttgtcaacaccgaatacaatcacaaacgcttgctcaaatcaagaggtccaaatgcctttgatggtttcaatgattttacctttgagaccat |
234 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| || |||| |||||||||||| |
|
|
| T |
4623767 |
cctttggtcacaccgaatacaatcacaaacgcttgctcaaatcaagaggtccaaaggcctttgatggtttcacggactttaactttgagaccat |
4623674 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #25
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 16 - 234
Target Start/End: Complemental strand, 4471499 - 4471281
Alignment:
| Q |
16 |
atcaaagatgagtaactttgaagagaaaaagccacatgcagtgttaactccatttccaattcaaggccatatcaatccattgttgaaactaggaaaatta |
115 |
Q |
| |
|
|||||| |||||||| |||| | ||| |||||||||||| || || | ||||| |||| |||||||||||||||| ||||||||||||||| ||| | |
|
|
| T |
4471499 |
atcaaatatgagtaattttgcaaagacaaagccacatgctgtattgattccatgtccagctcaaggccatatcaatgcattgttgaaactagcaaagctt |
4471400 |
T |
|
| Q |
116 |
cttcaccttagaggatttcacataacctttgtcaacaccgaatacaatcacaaacgcttgctcaaatcaagaggtccaaatgcctttgatggtttcaatg |
215 |
Q |
| |
|
|||||||||||||| ||||||||||| ||||||||||| ||||||||||||||| ||||||||| ||||||||||| || | |||||||||||| || |
|
|
| T |
4471399 |
cttcaccttagaggctttcacataacgtttgtcaacactgaatacaatcacaaagccttgctcaattcaagaggtcctgattctcttgatggtttcactg |
4471300 |
T |
|
| Q |
216 |
attttacctttgagaccat |
234 |
Q |
| |
|
| |||| |||||||||||| |
|
|
| T |
4471299 |
actttaactttgagaccat |
4471281 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #26
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 47 - 209
Target Start/End: Complemental strand, 4565583 - 4565421
Alignment:
| Q |
47 |
ccacatgcagtgttaactccatttccaattcaaggccatatcaatccattgttgaaactaggaaaattacttcaccttagaggatttcacataacctttg |
146 |
Q |
| |
|
|||||||| ||||| | |||| |||| ||||||| ||||| ||||||||||| ||||| | |||| | |||||||||||||||||||| |||||||||| |
|
|
| T |
4565583 |
ccacatgctgtgttgattccagctccatttcaaggacatataaatccattgttcaaacttgcaaaacttcttcaccttagaggatttcatataacctttg |
4565484 |
T |
|
| Q |
147 |
tcaacaccgaatacaatcacaaacgcttgctcaaatcaagaggtccaaatgcctttgatggtt |
209 |
Q |
| |
|
||||||| ||||||||||| ||||| ||||| ||||||||||||||||||||||| ||||||| |
|
|
| T |
4565483 |
tcaacactgaatacaatcataaacgattgctaaaatcaagaggtccaaatgccttagatggtt |
4565421 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #27
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 49 - 231
Target Start/End: Complemental strand, 4599715 - 4599533
Alignment:
| Q |
49 |
acatgcagtgttaactccatttccaattcaaggccatatcaatccattgttgaaactaggaaaattacttcaccttagaggatttcacataacctttgtc |
148 |
Q |
| |
|
||||||||| || | |||||| ||||||||||| ||||||||| ||| | ||||||| ||| | |||||||||||||||||| |||||||||| || |
|
|
| T |
4599715 |
acatgcagtattgattccattaccaattcaaggaaatatcaatctattaatcaaactagcaaagattcttcaccttagaggattttacataaccttcgtg |
4599616 |
T |
|
| Q |
149 |
aacaccgaatacaatcacaaacgcttgctcaaatcaagaggtccaaatgcctttgatggtttcaatgattttacctttgagac |
231 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||| ||| | | ||||||||| ||||||| |||| ||||| |
|
|
| T |
4599615 |
aacaccgagtacaatcacaaacgcttgctcaaatcaagaggtcctaattctcgtaatggtttcactgatttttccttcgagac |
4599533 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #28
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 41 - 209
Target Start/End: Original strand, 4255389 - 4255545
Alignment:
| Q |
41 |
aaaaagccacatgcagtgttaactccatttccaattcaaggccatatcaatccattgttgaaactaggaaaattacttcaccttagaggatttcacataa |
140 |
Q |
| |
|
|||| ||||||||| ||||| | ||||| |||| |||||||||||||||||| ||| || ||||||| |||||||||||| |||| ||| |
|
|
| T |
4255389 |
aaaatgccacatgctgtgttgattccatatccagttcaaggccatatcaatctattattcaaactagcaaaattacttcatcttaaagg----------- |
4255477 |
T |
|
| Q |
141 |
cctttgtcaacaccgaatacaatcacaaacgcttgctcaaatcaagaggtccaaatgcctttgatggtt |
209 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||| |
|
|
| T |
4255478 |
-ctttgtcaacaccgaatacaatcacaaacgcttgctcgaatcaagaggtccaaaagcctttgatggtt |
4255545 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #29
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 147 - 212
Target Start/End: Original strand, 4298172 - 4298237
Alignment:
| Q |
147 |
tcaacaccgaatacaatcacaaacgcttgctcaaatcaagaggtccaaatgcctttgatggtttca |
212 |
Q |
| |
|
|||||||||||||||||||||||| | ||||| ||||||| |||||||| || ||||||||||||| |
|
|
| T |
4298172 |
tcaacaccgaatacaatcacaaacacctgctcgaatcaaggggtccaaaagcttttgatggtttca |
4298237 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #30
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 156 - 191
Target Start/End: Original strand, 4483534 - 4483569
Alignment:
| Q |
156 |
aatacaatcacaaacgcttgctcaaatcaagaggtc |
191 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||| |
|
|
| T |
4483534 |
aatacaatcacaaacgtttgctcaaatcaagaggtc |
4483569 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 112; Significance: 9e-57; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 47 - 234
Target Start/End: Complemental strand, 1282987 - 1282800
Alignment:
| Q |
47 |
ccacatgcagtgttaactccatttccaattcaaggccatatcaatccattgttgaaactaggaaaattacttcaccttagaggatttcacataacctttg |
146 |
Q |
| |
|
|||||||| ||||| | ||||| |||| |||||||||||||||||||||||| ||||||| |||| |||||||||||||||| ||| |||||||||||| |
|
|
| T |
1282987 |
ccacatgctgtgttgattccatatccagctcaaggccatatcaatccattgttcaaactagcaaaactacttcaccttagaggcttttacataacctttg |
1282888 |
T |
|
| Q |
147 |
tcaacaccgaatacaatcacaaacgcttgctcaaatcaagaggtccaaatgcctttgatggtttcaatgattttacctttgagaccat |
234 |
Q |
| |
|
| || || ||||||||||||||||||||||||||||||||||||||||||||| | |||||||||| |||||||| |||||| ||||| |
|
|
| T |
1282887 |
ttaatactgaatacaatcacaaacgcttgctcaaatcaagaggtccaaatgccctagatggtttcactgattttagctttgaaaccat |
1282800 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 104; Significance: 5e-52; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 21 - 232
Target Start/End: Original strand, 20862358 - 20862569
Alignment:
| Q |
21 |
agatgagtaactttgaagagaaaaagccacatgcagtgttaactccatttccaattcaaggccatatcaatccattgttgaaactaggaaaattacttca |
120 |
Q |
| |
|
|||||||||| |||| |||||||| |||||||||||||||||||||| |||| ||||||| |||||||||||| |||| ||||||| |||| ||||||| |
|
|
| T |
20862358 |
agatgagtaattttgctgagaaaaaaccacatgcagtgttaactccatatccacttcaaggtcatatcaatccaatgttaaaactagcaaaactacttca |
20862457 |
T |
|
| Q |
121 |
ccttagaggatttcacataacctttgtcaacaccgaatacaatcacaaacgcttgctcaaatcaagaggtccaaatgcctttgatggtttcaatgatttt |
220 |
Q |
| |
|
||||||||| ||| ||||||| |||||||| || ||||||||||||||||||||||| || |||| ||||||| ||||||||||||||| ||| ||| |
|
|
| T |
20862458 |
ccttagaggcttttacataacatttgtcaatactgaatacaatcacaaacgcttgcttaagtcaatgggtccaataccctttgatggtttcactgacttt |
20862557 |
T |
|
| Q |
221 |
acctttgagacc |
232 |
Q |
| |
|
|||||||||| |
|
|
| T |
20862558 |
cgctttgagacc |
20862569 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 48 - 234
Target Start/End: Complemental strand, 1676074 - 1675888
Alignment:
| Q |
48 |
cacatgcagtgttaactccatttccaattcaaggccatatcaatccattgttgaaactaggaaaattacttcaccttagaggatttcacataacctttgt |
147 |
Q |
| |
|
||||||| ||||| | ||||| |||| |||||||||||||||||||||||| ||||||| |||| | ||||||||||||| | ||| |||||| ||| |
|
|
| T |
1676074 |
cacatgctgtgttcattccatatccagctcaaggccatatcaatccattgttcaaactagcaaaacttattcaccttagaggctctcatgtaacctatgt |
1675975 |
T |
|
| Q |
148 |
caacaccgaatacaatcacaaacgcttgctcaaatcaagaggtccaaatgcctttgatggtttcaatgattttacctttgagaccat |
234 |
Q |
| |
|
|||||| ||||||||||||||||| |||||||||||||||||||||| |||||| |||||||||| |||||||| |||||| ||||| |
|
|
| T |
1675974 |
caacactgaatacaatcacaaacgtttgctcaaatcaagaggtccaactgccttggatggtttcactgattttagctttgaaaccat |
1675888 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0475 (Bit Score: 100; Significance: 1e-49; HSPs: 1)
Name: scaffold0475
Description:
Target: scaffold0475; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 41 - 220
Target Start/End: Complemental strand, 2384 - 2205
Alignment:
| Q |
41 |
aaaaagccacatgcagtgttaactccatttccaattcaaggccatatcaatccattgttgaaactaggaaaattacttcaccttagaggatttcacataa |
140 |
Q |
| |
|
||||| |||||||| ||||| | ||||| |||| |||||||||||||||||||||| || ||||||| ||| | |||||||||||||| |||||||||| |
|
|
| T |
2384 |
aaaaaaccacatgctgtgttgattccatatccagttcaaggccatatcaatccattattcaaactagcaaagcttcttcaccttagaggctttcacataa |
2285 |
T |
|
| Q |
141 |
cctttgtcaacaccgaatacaatcacaaacgcttgctcaaatcaagaggtccaaatgcctttgatggtttcaatgatttt |
220 |
Q |
| |
|
||||||||||||| ||||||||||| |||||||||||||||||||||||||| ||||| ||||||||||| ||||||| |
|
|
| T |
2284 |
cctttgtcaacactgaatacaatcataaacgcttgctcaaatcaagaggtcctaatgctcttgatggtttcgctgatttt |
2205 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 100; Significance: 1e-49; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 16 - 231
Target Start/End: Complemental strand, 3088330 - 3088115
Alignment:
| Q |
16 |
atcaaagatgagtaactttgaagagaaaaagccacatgcagtgttaactccatttccaattcaaggccatatcaatccattgttgaaactaggaaaatta |
115 |
Q |
| |
|
||||||||||||| |||||| || |||||||||||||| ||||| | ||||| |||| ||||||| ||||| ||||||||||| ||||||| |||| | |
|
|
| T |
3088330 |
atcaaagatgagttactttgttgataaaaagccacatgctgtgttgattccatatccacttcaaggtcatataaatccattgttaaaactagcaaaactt |
3088231 |
T |
|
| Q |
116 |
cttcaccttagaggatttcacataacctttgtcaacaccgaatacaatcacaaacgcttgctcaaatcaagaggtccaaatgcctttgatggtttcaatg |
215 |
Q |
| |
|
|||||||||| ||| |||||||||||||||||||| ||||||||||||||||| || ||||| |||||||||||| | ||| | |||||||||||| || |
|
|
| T |
3088230 |
cttcaccttaaaggctttcacataacctttgtcaataccgaatacaatcacaaccgtttgcttaaatcaagaggttctaattctcttgatggtttcactg |
3088131 |
T |
|
| Q |
216 |
attttacctttgagac |
231 |
Q |
| |
|
||||| ||||||||| |
|
|
| T |
3088130 |
attttgtctttgagac |
3088115 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0288 (Bit Score: 97; Significance: 8e-48; HSPs: 1)
Name: scaffold0288
Description:
Target: scaffold0288; HSP #1
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 64 - 220
Target Start/End: Original strand, 2042 - 2198
Alignment:
| Q |
64 |
tccatttccaattcaaggccatatcaatccattgttgaaactaggaaaattacttcaccttagaggatttcacataacctttgtcaacaccgaatacaat |
163 |
Q |
| |
|
||||| |||| ||||||||||||||||||||||||| ||||||| ||| | |||||||||||||| ||||||||||||||||||||||| ||||||||| |
|
|
| T |
2042 |
tccatatccagttcaaggccatatcaatccattgttcaaactagcaaagcttcttcaccttagaggctttcacataacctttgtcaacactgaatacaat |
2141 |
T |
|
| Q |
164 |
cacaaacgcttgctcaaatcaagaggtccaaatgcctttgatggtttcaatgatttt |
220 |
Q |
| |
|
|| |||||||||||||||||||||||||| ||||| ||||||||||| ||||||| |
|
|
| T |
2142 |
cataaacgcttgctcaaatcaagaggtcctaatgctcttgatggtttcgctgatttt |
2198 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 97; Significance: 8e-48; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 43 - 235
Target Start/End: Complemental strand, 24104653 - 24104461
Alignment:
| Q |
43 |
aaagccacatgcagtgttaactccatttccaattcaaggccatatcaatccattgttgaaactaggaaaattacttcaccttagaggatttcacataacc |
142 |
Q |
| |
|
|||||| ||||| ||||| | |||| |||| ||||||| ||||||||| ||||||| ||||||||||| | |||||||||||||| |||||||||||| |
|
|
| T |
24104653 |
aaagccgcatgctgtgttgattccagctccatttcaaggtcatatcaatgcattgttcaaactaggaaagcttcttcaccttagaggctttcacataacc |
24104554 |
T |
|
| Q |
143 |
tttgtcaacaccgaatacaatcacaaacgcttgctcaaatcaagaggtccaaatgcctttgatggtttcaatgattttacctttgagaccata |
235 |
Q |
| |
|
|| || |||||||||||||||||||||||||||||| ||||||||| ||| ||| | |||||||||||||||| |||| ||||||||||||| |
|
|
| T |
24104553 |
ttcgtgaacaccgaatacaatcacaaacgcttgctcgaatcaagagatcctaattctcttgatggtttcaatgactttaactttgagaccata |
24104461 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0199 (Bit Score: 95; Significance: 1e-46; HSPs: 1)
Name: scaffold0199
Description:
Target: scaffold0199; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 48 - 234
Target Start/End: Complemental strand, 1311 - 1125
Alignment:
| Q |
48 |
cacatgcagtgttaactccatttccaattcaaggccatatcaatccattgttgaaactaggaaaattacttcaccttagaggatttcacataacctttgt |
147 |
Q |
| |
|
||||||| ||||| | ||||| |||| |||||||||||||||||||||||| ||||||| |||| | ||||||||||||| | ||| |||||| ||| |
|
|
| T |
1311 |
cacatgctgtgttcattccatatccagctcaaggccatatcaatccattgttcaaactagcaaaacttattcaccttagaggctctcatgtaacctatgt |
1212 |
T |
|
| Q |
148 |
caacaccgaatacaatcacaaacgcttgctcaaatcaagaggtccaaatgcctttgatggtttcaatgattttacctttgagaccat |
234 |
Q |
| |
|
|||||| ||||||||||||||||| |||||||||||||||||||||| |||||| |||||||||| |||||||| |||||| ||||| |
|
|
| T |
1211 |
caacactgaatacaatcacaaacgtttgctcaaatcaagaggtccaactgccttggatggtttcactgattttagctttgaaaccat |
1125 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 135 - 197
Target Start/End: Original strand, 1349579 - 1349641
Alignment:
| Q |
135 |
acataacctttgtcaacaccgaatacaatcacaaacgcttgctcaaatcaagaggtccaaatg |
197 |
Q |
| |
|
||||||| ||||||||||| |||| ||| ||||||||||| |||||||| | |||||| |||| |
|
|
| T |
1349579 |
acataacatttgtcaacactgaattcaaccacaaacgcttactcaaatccataggtcctaatg |
1349641 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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