View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5949_low_3 (Length: 498)
Name: NF5949_low_3
Description: NF5949
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5949_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 156; Significance: 1e-82; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 296 - 472
Target Start/End: Complemental strand, 52445330 - 52445158
Alignment:
| Q |
296 |
aaaaaatcaatgattcatactcatacgtatatattaactcatccaaatattcatttgtgaatatgtgcctttcattgatgactaatggagcagtgcaaag |
395 |
Q |
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| T |
52445330 |
aaaaaatcaatgattcatactcatacgtatatattaactcatccaaatattcatttgtgaatatgtgcctttcattgatgactaatggaacagtgcaaag |
52445231 |
T |
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| Q |
396 |
tgaaatatatatatgacgcgtaactaccaagaatgttaacaatactagtggattacggacaaggacatgttgcttat |
472 |
Q |
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| T |
52445230 |
tgaaat----atatgacgcgtaactaccaagaatgttaacaatactagtggattacggacaaggacatgttgcttat |
52445158 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 159 - 239
Target Start/End: Complemental strand, 52445452 - 52445372
Alignment:
| Q |
159 |
aaccttcaaaattagaatacaagattcgagtgttaatttcaagagtgatttttgaatatttatatttaaaaactcgcatat |
239 |
Q |
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| T |
52445452 |
aaccttcaaaattagaatacaagattcgagtgttaatttcaagagtgatttttgaatatttatatttataaactcgcatat |
52445372 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 19 - 85
Target Start/End: Complemental strand, 52445514 - 52445448
Alignment:
| Q |
19 |
attaaccgttcctgatctttggtaaaagcagaaaagtcactgtaaagcaatctgatccacttaacct |
85 |
Q |
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| T |
52445514 |
attaaccgttcctgatctttggtaaaagcagaaaagtcactgtaaagcaatctgatccacttaacct |
52445448 |
T |
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