View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5949_low_5 (Length: 424)
Name: NF5949_low_5
Description: NF5949
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5949_low_5 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 402; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 402; E-Value: 0
Query Start/End: Original strand, 1 - 424
Target Start/End: Complemental strand, 31055861 - 31055441
Alignment:
| Q |
1 |
agagaacaagaatagctgtaacttcacattttctaatcaacttttgaggttgacttcgcatccctattaatcgatgacctccaatttttgaccatctatg |
100 |
Q |
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| T |
31055861 |
agagaacaagaatagctgtaacttcacattttctaatcaacttttgaggttgacttcgcatccctattaatcgatgacctccaatttttgaccatctatg |
31055762 |
T |
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| Q |
101 |
tacctgaaaaacagaaaatcgtaaataaataaatggaagtacatgaaaacttcaacattctctaatcttataaaacaaaagcagaaggtattgaaaacca |
200 |
Q |
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| T |
31055761 |
tacctgaaaaacagaaaatcgtaaataaataaatggaagtacatgaaaacttcaacattctctaatcttataaaacaaaagcagaaggtattgaaaatca |
31055662 |
T |
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| Q |
201 |
tacactggtaactgtctgttcttcggaaaggcataaccctcttgtttctggcatgtgatggaaaccctggtagaaaccaaccaattagaaagagtaagag |
300 |
Q |
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| T |
31055661 |
tacactggcaactgtctgttcttcggaaaggcataaccctcttgtttctggcatgtgatggaaaccctggtagaaaccaaccaattagaaagagtaagag |
31055562 |
T |
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| Q |
301 |
gaattgaattaattcctatgactgaaaaacaaagaatggaggatggattcattacattcttctctccaacgatggcttcattaagtgcttctcttccaac |
400 |
Q |
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| T |
31055561 |
gaattgaattaattcctatgactgaaaaacaaagaat---ggatggattcattacattcttctctccaacgatggcttcattaagtgcttctcttccaac |
31055465 |
T |
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| Q |
401 |
tagaagcatagggatttgttgatc |
424 |
Q |
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| T |
31055464 |
tagaagcatagggatttgttgatc |
31055441 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 51; Significance: 4e-20; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 3 - 109
Target Start/End: Original strand, 34742763 - 34742869
Alignment:
| Q |
3 |
agaacaagaatagctgtaacttcacattttctaatcaacttttgaggttgacttcgcatccctattaatcgatgacctccaatttttgaccatctatgta |
102 |
Q |
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||||||||||| |||||||||||||||||||| |||| ||||||||||||| ||| |||||| || | || ||| ||||||||| ||| || |||||||| |
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| T |
34742763 |
agaacaagaattgctgtaacttcacattttcttatcagcttttgaggttgagttctcatcccaataagtctatggcctccaattcttggccttctatgta |
34742862 |
T |
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| Q |
103 |
cctgaaa |
109 |
Q |
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|||||| |
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| T |
34742863 |
tctgaaa |
34742869 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 348 - 412
Target Start/End: Original strand, 34743127 - 34743191
Alignment:
| Q |
348 |
ttcattacattcttctctccaacgatggcttcattaagtgcttctcttccaactagaagcatagg |
412 |
Q |
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||||||||| ||||||||||||| || || ||||| || ||||||||| |||| ||||||||||| |
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| T |
34743127 |
ttcattacagtcttctctccaacaatagcatcatttagcgcttctctttcaacaagaagcatagg |
34743191 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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