View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5949_low_6 (Length: 304)
Name: NF5949_low_6
Description: NF5949
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5949_low_6 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 11 - 304
Target Start/End: Complemental strand, 44704797 - 44704498
Alignment:
| Q |
11 |
taattctgcatggacagaggactctgctggccattatcttgtagtggatcttcctggtattgcattaatatcactaacttatgaacgtaaaaatact--- |
107 |
Q |
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| T |
44704797 |
taattctgcatggacagaggactctgctgcccattatcttgtagtggatcttcctggtattgcattaatatcactaacttatgaacgtaaaaataattat |
44704698 |
T |
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| Q |
108 |
---agacttatgtaattataagaatgaaccctttaaaccaatgatacactaattactagacttatgtaattacttgtttcatgtgagaataatctaagaa |
204 |
Q |
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| T |
44704697 |
aatattcatatgaatttataagaatgaaccctttaaaccaatgatacactaattactagacttatgtaattacttgtttcatgtgagaataatctaagaa |
44704598 |
T |
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| Q |
205 |
aaaaccaatgaattatttacaaggattttttgtacaattatcagtcaagattgatgctatgaaaacgagaataacttgtgaatatttttgtcttctcttt |
304 |
Q |
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| T |
44704597 |
aaaaccaatgaactatttacaaggattttttgtacaattatcagtcaagattgatgccatgaaaacgagaataacttgtgaatatttttgtcttctcttt |
44704498 |
T |
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