View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5949_low_7 (Length: 298)
Name: NF5949_low_7
Description: NF5949
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5949_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 252; Significance: 1e-140; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 5 - 289
Target Start/End: Original strand, 52444881 - 52445161
Alignment:
| Q |
5 |
aaatcaaatgggtttgtttggttcaggaaaaggagcttttgtaacatgttcttctgagaagaattcagagttatatcacgcggttcttggaggtttagga |
104 |
Q |
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| T |
52444881 |
aaatcaaatgggtttgtttggttcaggaaaaggagattttgtaacatgctcttctgagaagaattcagagttatatcacgcggttcttggaggtttagga |
52444980 |
T |
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| Q |
105 |
caatttggagttataacaagggcaagaatttctcttaagccagctcccacaacggtacgtacggttatacagaattgtcaataactttattttgtctcat |
204 |
Q |
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| T |
52444981 |
caatttggagttataacaagggcaagaatttctcttaagccagctcccacaacg----gtacggttatacagaattgtcaataactttattttgtctcat |
52445076 |
T |
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| Q |
205 |
tgtgacatttttcctccaacaaatgtacaccaaatctatctagttgtcgatcatatattttgaccacatcattcttgtgagataa |
289 |
Q |
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| T |
52445077 |
tgtaacatttttcatccaacaaatgtacaccaaatctatctagttgtcgatcatatattttgaccacatcattcttgtgagataa |
52445161 |
T |
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Target: chr2 (Bit Score: 47; Significance: 7e-18; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 26 - 148
Target Start/End: Original strand, 17277171 - 17277293
Alignment:
| Q |
26 |
ttcaggaaaaggagcttttgtaacatgttcttctgagaagaattcagagttatatcacgcggttcttggaggtttaggacaatttggagttataacaagg |
125 |
Q |
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|||||||||||||| ||||||||||| ||| |||| |||||||| |||| | | | ||||||||||| ||||||||||||||| ||||||||||| |
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| T |
17277171 |
ttcaggaaaaggagaatttgtaacatgctctaaacagaacaattcagaattatttaatggagttcttggaggattaggacaatttggaattataacaagg |
17277270 |
T |
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| Q |
126 |
gcaagaatttctcttaagccagc |
148 |
Q |
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| T |
17277271 |
gcaagaatagctcttgagccagc |
17277293 |
T |
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