View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5949_low_8 (Length: 260)
Name: NF5949_low_8
Description: NF5949
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5949_low_8 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 130; Significance: 2e-67; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 1 - 190
Target Start/End: Original strand, 10166747 - 10166931
Alignment:
| Q |
1 |
caagaaaaccatgaaatcatacaaatataaagtacttatgcttataataccagttaagctcattttacctatttcccttcaatttttgtaggtttttgag |
100 |
Q |
| |
|
||||||||||| ||||||||||| ||||| |||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
10166747 |
caagaaaaccaagaaatcatacatatata-----cttatgcttataataccagttaagttcattttacctattttccttcaatttttgtaggtttttgag |
10166841 |
T |
|
| Q |
101 |
cttaaagaccaagatcggtaaagagcaataattctgagtcagagcacatttgctaagcgagccaggagtgtatcaggaaaaaacaaacta |
190 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||| || |||||||||||||||||||||| |||||| |||||||||||||| |
|
|
| T |
10166842 |
cttaaagaccaagactggtaaagagcaataattctgagtcagcgcgcatttgctaagcgagccaggagcgtatcaagaaaaaacaaacta |
10166931 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 211 - 243
Target Start/End: Original strand, 10167002 - 10167034
Alignment:
| Q |
211 |
gagagttttagggaattttcaataacagatttg |
243 |
Q |
| |
|
||||||||| ||||||||||||||||||||||| |
|
|
| T |
10167002 |
gagagtttttgggaattttcaataacagatttg |
10167034 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 14 - 114
Target Start/End: Complemental strand, 53292722 - 53292623
Alignment:
| Q |
14 |
aaatcatacaaatataaagtacttatgcttataataccagttaagctcattttacctatttcccttcaatttttgtaggtttttgagcttaaagaccaag |
113 |
Q |
| |
|
||||||| |||||||||||| | ||| |||||| ||||||||| |||||| ||||||||||||| || |||| |||||||||||||| ||||||| |
|
|
| T |
53292722 |
aaatcatgcaaatataaagttcgtatatttataactatagttaagctacttttacatatttcccttcaa-ttatgtaagtttttgagcttaatgaccaag |
53292624 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University