View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5949_low_9 (Length: 252)

Name: NF5949_low_9
Description: NF5949
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5949_low_9
NF5949_low_9
[»] chr3 (14 HSPs)
chr3 (43-151)||(54734146-54734254)
chr3 (164-214)||(54528983-54529033)
chr3 (164-228)||(33148826-33148890)
chr3 (164-228)||(33450047-33450111)
chr3 (164-221)||(7546078-7546135)
chr3 (164-209)||(21566981-21567026)
chr3 (164-209)||(50663876-50663921)
chr3 (169-228)||(52311860-52311919)
chr3 (166-220)||(3540254-3540308)
chr3 (164-214)||(42947376-42947426)
chr3 (164-214)||(47064865-47064915)
chr3 (164-221)||(42951008-42951065)
chr3 (164-208)||(13843626-13843670)
chr3 (164-208)||(44430419-44430463)
[»] chr7 (14 HSPs)
chr7 (164-210)||(28138760-28138806)
chr7 (164-210)||(26009370-26009416)
chr7 (164-221)||(23345066-23345123)
chr7 (164-221)||(36325620-36325677)
chr7 (167-218)||(23344444-23344495)
chr7 (164-210)||(26011984-26012030)
chr7 (164-228)||(10526997-10527061)
chr7 (164-210)||(19931489-19931535)
chr7 (164-210)||(33839473-33839519)
chr7 (164-210)||(41957597-41957643)
chr7 (164-214)||(42548162-42548212)
chr7 (164-228)||(25428732-25428796)
chr7 (164-228)||(28139448-28139512)
chr7 (164-228)||(31852636-31852700)
[»] scaffold0163 (1 HSPs)
scaffold0163 (164-214)||(35777-35827)
[»] chr6 (7 HSPs)
chr6 (164-210)||(14153355-14153401)
chr6 (164-212)||(806546-806594)
chr6 (164-220)||(2559640-2559696)
chr6 (164-210)||(1826590-1826636)
chr6 (188-228)||(1826136-1826176)
chr6 (164-214)||(35060922-35060972)
chr6 (164-221)||(6819611-6819668)
[»] chr2 (9 HSPs)
chr2 (166-228)||(17797025-17797087)
chr2 (166-226)||(9539093-9539153)
chr2 (164-210)||(25389881-25389927)
chr2 (164-202)||(28360221-28360259)
chr2 (164-212)||(31133180-31133228)
chr2 (169-228)||(38147085-38147144)
chr2 (164-210)||(12965050-12965096)
chr2 (164-210)||(22788016-22788062)
chr2 (164-208)||(20685007-20685051)
[»] chr4 (7 HSPs)
chr4 (164-214)||(33164532-33164582)
chr4 (164-209)||(38677694-38677739)
chr4 (164-214)||(28796621-28796671)
chr4 (164-214)||(36217871-36217921)
chr4 (164-218)||(37576544-37576598)
chr4 (164-210)||(54208181-54208227)
chr4 (175-208)||(37030921-37030954)
[»] chr1 (10 HSPs)
chr1 (164-214)||(3792297-3792347)
chr1 (164-210)||(5602945-5602991)
chr1 (166-212)||(9862921-9862967)
chr1 (164-214)||(37260940-37260990)
chr1 (167-211)||(35392134-35392178)
chr1 (164-214)||(20447024-20447074)
chr1 (164-214)||(20532787-20532837)
chr1 (164-210)||(28476013-28476059)
chr1 (164-212)||(5119060-5119108)
chr1 (164-228)||(42883109-42883173)
[»] chr8 (2 HSPs)
chr8 (164-228)||(3588558-3588622)
chr8 (164-208)||(9418588-9418632)
[»] chr5 (2 HSPs)
chr5 (164-218)||(3758923-3758977)
chr5 (164-212)||(38739388-38739436)
[»] scaffold1763 (1 HSPs)
scaffold1763 (164-208)||(397-441)
[»] scaffold0246 (1 HSPs)
scaffold0246 (164-208)||(2886-2930)
[»] scaffold0041 (1 HSPs)
scaffold0041 (164-208)||(23488-23532)


Alignment Details
Target: chr3 (Bit Score: 109; Significance: 6e-55; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 43 - 151
Target Start/End: Original strand, 54734146 - 54734254
Alignment:
Q  43 tgtgagttgaaagtaatttacaccgaataatatcaacattttctgtagcattaccactcttttttctttggtcgaatcaacatcaccactctaacaaaga 142  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54734146 tgtgagttgaaagtaatttacaccgaataatatcaacattttctgtagcattaccactcttttttctttggtcgaatcaacatcaccactctaacaaaga 54734245  T
Q  143 aacacgata 151  Q
    |||||||||    
T  54734246 aacacgata 54734254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 164 - 214
Target Start/End: Complemental strand, 54529033 - 54528983
Alignment:
Q  164 aattctgctctttacccaaatgattttgctcattctcaaagtaaatgtcca 214  Q
    |||||||||||||||| |||||||||||||||||||||| |||||||||||    
T  54529033 aattctgctctttaccaaaatgattttgctcattctcaatgtaaatgtcca 54528983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 164 - 228
Target Start/End: Original strand, 33148826 - 33148890
Alignment:
Q  164 aattctgctctttacccaaatgattttgctcattctcaaagtaaatgtccatattgcctctgcgt 228  Q
    |||||||||| ||||||||| | |||||||| ||| |||||||||||| |||||||||| |||||    
T  33148826 aattctgctcattacccaaacgtttttgctcgttcccaaagtaaatgtacatattgcctttgcgt 33148890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 164 - 228
Target Start/End: Complemental strand, 33450111 - 33450047
Alignment:
Q  164 aattctgctctttacccaaatgattttgctcattctcaaagtaaatgtccatattgcctctgcgt 228  Q
    |||||||||| |||||||||   ||||||||||||||||| ||||||||||||||| | ||||||    
T  33450111 aattctgctcattacccaaactgttttgctcattctcaaaataaatgtccatattgtccctgcgt 33450047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 164 - 221
Target Start/End: Original strand, 7546078 - 7546135
Alignment:
Q  164 aattctgctctttacccaaatgattttgctcattctcaaagtaaatgtccatattgcc 221  Q
    ||||||||||||||||||||   ||| |||| ||| ||||||||||||||||||||||    
T  7546078 aattctgctctttacccaaactgtttcgctcgttcccaaagtaaatgtccatattgcc 7546135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 164 - 209
Target Start/End: Complemental strand, 21567026 - 21566981
Alignment:
Q  164 aattctgctctttacccaaatgattttgctcattctcaaagtaaat 209  Q
    ||||||||||||||||||||||||||| ||||||| ||| ||||||    
T  21567026 aattctgctctttacccaaatgatttttctcattcccaatgtaaat 21566981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 164 - 209
Target Start/End: Original strand, 50663876 - 50663921
Alignment:
Q  164 aattctgctctttacccaaatgattttgctcattctcaaagtaaat 209  Q
    |||||||||||| ||||||||||||| |||||||| ||||||||||    
T  50663876 aattctgctcttcacccaaatgatttcgctcattcccaaagtaaat 50663921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 169 - 228
Target Start/End: Complemental strand, 52311919 - 52311860
Alignment:
Q  169 tgctctttacccaaatgattttgctcattctcaaagtaaatgtccatattgcctctgcgt 228  Q
    ||||||||||| ||||  |||||||| ||| ||||||||||||| |||||||| ||||||    
T  52311919 tgctctttaccaaaattgttttgctcgttcccaaagtaaatgtctatattgcccctgcgt 52311860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 166 - 220
Target Start/End: Complemental strand, 3540308 - 3540254
Alignment:
Q  166 ttctgctctttacccaaatgattttgctcattctcaaagtaaatgtccatattgc 220  Q
    |||||||||||||| |||   |||||||| ||| |||||||||||||||||||||    
T  3540308 ttctgctctttaccaaaactgttttgctcgttcccaaagtaaatgtccatattgc 3540254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 164 - 214
Target Start/End: Original strand, 42947376 - 42947426
Alignment:
Q  164 aattctgctctttacccaaatgattttgctcattctcaaagtaaatgtcca 214  Q
    |||||||||| ||||| |||||||||  ||||||||||||||||| |||||    
T  42947376 aattctgctcattacctaaatgatttcactcattctcaaagtaaaagtcca 42947426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 164 - 214
Target Start/End: Original strand, 47064865 - 47064915
Alignment:
Q  164 aattctgctctttacccaaatgattttgctcattctcaaagtaaatgtcca 214  Q
    |||| ||||| |||||||||||||| ||||||||| ||||||||| |||||    
T  47064865 aattatgctcattacccaaatgattctgctcattcccaaagtaaaagtcca 47064915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 164 - 221
Target Start/End: Complemental strand, 42951065 - 42951008
Alignment:
Q  164 aattctgctctttacccaaatgattttgctcattctcaaagtaaatgtccatattgcc 221  Q
    |||||||||| |||| |||||  ||  |||||||| ||||||||||||||||||||||    
T  42951065 aattctgctcattactcaaatacttccgctcattcccaaagtaaatgtccatattgcc 42951008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 164 - 208
Target Start/End: Complemental strand, 13843670 - 13843626
Alignment:
Q  164 aattctgctctttacccaaatgattttgctcattctcaaagtaaa 208  Q
    |||||||||| ||||||||||| ||| |||||||| |||||||||    
T  13843670 aattctgctcattacccaaatggtttcgctcattcccaaagtaaa 13843626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 164 - 208
Target Start/End: Original strand, 44430419 - 44430463
Alignment:
Q  164 aattctgctctttacccaaatgattttgctcattctcaaagtaaa 208  Q
    |||||||||| ||| ||||||| |||||||||||| |||||||||    
T  44430419 aattctgctcattatccaaatggttttgctcattcccaaagtaaa 44430463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 164 - 210
Target Start/End: Original strand, 28138760 - 28138806
Alignment:
Q  164 aattctgctctttacccaaatgattttgctcattctcaaagtaaatg 210  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||    
T  28138760 aattctgctctttacccaaatgattttgctcattcccaaagtaaatg 28138806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 164 - 210
Target Start/End: Original strand, 26009370 - 26009416
Alignment:
Q  164 aattctgctctttacccaaatgattttgctcattctcaaagtaaatg 210  Q
    |||||||||||||||||||| |||||||||||||| |||||||||||    
T  26009370 aattctgctctttacccaaacgattttgctcattcccaaagtaaatg 26009416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 164 - 221
Target Start/End: Complemental strand, 23345123 - 23345066
Alignment:
Q  164 aattctgctctttacccaaatgattttgctcattctcaaagtaaatgtccatattgcc 221  Q
    |||| ||||||||||||||| |||||||||||||| |||| ||||||| |||||||||    
T  23345123 aattatgctctttacccaaacgattttgctcattcccaaaataaatgttcatattgcc 23345066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 164 - 221
Target Start/End: Original strand, 36325620 - 36325677
Alignment:
Q  164 aattctgctctttacccaaatgattttgctcattctcaaagtaaatgtccatattgcc 221  Q
    ||||||||||||||| ||||   |||||||| ||||||||||||||||||||||||||    
T  36325620 aattctgctctttactcaaacagttttgctcgttctcaaagtaaatgtccatattgcc 36325677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 167 - 218
Target Start/End: Original strand, 23344444 - 23344495
Alignment:
Q  167 tctgctctttacccaaatgattttgctcattctcaaagtaaatgtccatatt 218  Q
    ||||||||||||||||| | ||||||||||| | ||||||||||||||||||    
T  23344444 tctgctctttacccaaacggttttgctcatttttaaagtaaatgtccatatt 23344495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 164 - 210
Target Start/End: Complemental strand, 26012030 - 26011984
Alignment:
Q  164 aattctgctctttacccaaatgattttgctcattctcaaagtaaatg 210  Q
    |||||||||||||||||||| ||||||  ||||||||||||||||||    
T  26012030 aattctgctctttacccaaacgattttaatcattctcaaagtaaatg 26011984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 164 - 228
Target Start/End: Complemental strand, 10527061 - 10526997
Alignment:
Q  164 aattctgctctttacccaaatgattttgctcattctcaaagtaaatgtccatattgcctctgcgt 228  Q
    ||||||||||||||||||||||  ||   |||||| ||||||||||||||| ||||||| |||||    
T  10527061 aattctgctctttacccaaatggattcaatcattcccaaagtaaatgtccaaattgcctttgcgt 10526997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 164 - 210
Target Start/End: Original strand, 19931489 - 19931535
Alignment:
Q  164 aattctgctctttacccaaatgattttgctcattctcaaagtaaatg 210  Q
    |||||||||||||| | ||||| |||||||| |||||||||||||||    
T  19931489 aattctgctctttatctaaatggttttgctcgttctcaaagtaaatg 19931535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 164 - 210
Target Start/End: Complemental strand, 33839519 - 33839473
Alignment:
Q  164 aattctgctctttacccaaatgattttgctcattctcaaagtaaatg 210  Q
    |||||||||||||| |||||||  || ||||||||||||||||||||    
T  33839519 aattctgctctttatccaaatggattcgctcattctcaaagtaaatg 33839473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 164 - 210
Target Start/End: Complemental strand, 41957643 - 41957597
Alignment:
Q  164 aattctgctctttacccaaatgattttgctcattctcaaagtaaatg 210  Q
    |||| ||||||||||||||| ||||||| |||||| |||||||||||    
T  41957643 aattttgctctttacccaaacgattttgatcattcccaaagtaaatg 41957597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 164 - 214
Target Start/End: Original strand, 42548162 - 42548212
Alignment:
Q  164 aattctgctctttacccaaatgattttgctcattctcaaagtaaatgtcca 214  Q
    |||||||||| ||||||||||  |||||||||||| ||||||||| |||||    
T  42548162 aattctgctcattacccaaatcgttttgctcattcccaaagtaaaagtcca 42548212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 164 - 228
Target Start/End: Original strand, 25428732 - 25428796
Alignment:
Q  164 aattctgctctttacccaaatgattttgctcattctcaaagtaaatgtccatattgcctctgcgt 228  Q
    |||| ||||||||||||||| | || ||||||||| |||||||||| |||| | |||| ||||||    
T  25428732 aattttgctctttacccaaacggttctgctcattcccaaagtaaatatccaaaatgcccctgcgt 25428796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 164 - 228
Target Start/End: Complemental strand, 28139512 - 28139448
Alignment:
Q  164 aattctgctctttacccaaatgattttgctcattctcaaagtaaatgtccatattgcctctgcgt 228  Q
    ||||||||| ||||||||||||  ||||| ||||| ||||||||||| ||| | |||| ||||||    
T  28139512 aattctgctttttacccaaatggatttgcccattcccaaagtaaatgaccaaaatgcccctgcgt 28139448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 164 - 228
Target Start/End: Original strand, 31852636 - 31852700
Alignment:
Q  164 aattctgctctttacccaaatgattttgctcattctcaaagtaaatgtccatattgcctctgcgt 228  Q
    |||||||||| ||| ||||| | |||||||| || ||||||||||||| |||||| || ||||||    
T  31852636 aattctgctcattatccaaacggttttgctcgttttcaaagtaaatgttcatattacccctgcgt 31852700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0163 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0163
Description:

Target: scaffold0163; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 164 - 214
Target Start/End: Original strand, 35777 - 35827
Alignment:
Q  164 aattctgctctttacccaaatgattttgctcattctcaaagtaaatgtcca 214  Q
    |||||||||||||| |||||  |||||||||||||||||||||||||||||    
T  35777 aattctgctctttaaccaaacaattttgctcattctcaaagtaaatgtcca 35827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 164 - 210
Target Start/End: Original strand, 14153355 - 14153401
Alignment:
Q  164 aattctgctctttacccaaatgattttgctcattctcaaagtaaatg 210  Q
    |||||||||| |||||||||||||||||||||||| |||||||||||    
T  14153355 aattctgctcattacccaaatgattttgctcattcccaaagtaaatg 14153401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 164 - 212
Target Start/End: Original strand, 806546 - 806594
Alignment:
Q  164 aattctgctctttacccaaatgattttgctcattctcaaagtaaatgtc 212  Q
    ||||||||||||||||||||   ||||||||||||||||||||||||||    
T  806546 aattctgctctttacccaaacagttttgctcattctcaaagtaaatgtc 806594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 164 - 220
Target Start/End: Complemental strand, 2559696 - 2559640
Alignment:
Q  164 aattctgctctttacccaaatgattttgctcattctcaaagtaaatgtccatattgc 220  Q
    |||| ||||||||||||||| |||||||||| ||| |||||||||||| ||||||||    
T  2559696 aattttgctctttacccaaacgattttgctcgttcccaaagtaaatgttcatattgc 2559640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 164 - 210
Target Start/End: Complemental strand, 1826636 - 1826590
Alignment:
Q  164 aattctgctctttacccaaatgattttgctcattctcaaagtaaatg 210  Q
    |||||||||||||| ||||||||||||||||||| | ||||||||||    
T  1826636 aattctgctctttatccaaatgattttgctcatttttaaagtaaatg 1826590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 188 - 228
Target Start/End: Original strand, 1826136 - 1826176
Alignment:
Q  188 tttgctcattctcaaagtaaatgtccatattgcctctgcgt 228  Q
    ||||||||||||||||||||||||||||||| ||| |||||    
T  1826136 tttgctcattctcaaagtaaatgtccatattacctttgcgt 1826176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 164 - 214
Target Start/End: Complemental strand, 35060972 - 35060922
Alignment:
Q  164 aattctgctctttacccaaatgattttgctcattctcaaagtaaatgtcca 214  Q
    |||||||||| ||||||||||||||  |||||||  |||||||||||||||    
T  35060972 aattctgctcattacccaaatgattccgctcatttccaaagtaaatgtcca 35060922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 164 - 221
Target Start/End: Complemental strand, 6819668 - 6819611
Alignment:
Q  164 aattctgctctttacccaaatgattttgctcattctcaaagtaaatgtccatattgcc 221  Q
    |||||||||||||||| |||   |||||||| ||| |||| |||||||||||||||||    
T  6819668 aattctgctctttaccaaaacagttttgctcgttcccaaaataaatgtccatattgcc 6819611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 166 - 228
Target Start/End: Complemental strand, 17797087 - 17797025
Alignment:
Q  166 ttctgctctttacccaaatgattttgctcattctcaaagtaaatgtccatattgcctctgcgt 228  Q
    ||||||||||||||||||  ||||||||  ||| |||||||||||||||||||||| ||||||    
T  17797087 ttctgctctttacccaaacaattttgcttgttcccaaagtaaatgtccatattgcccctgcgt 17797025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 166 - 226
Target Start/End: Complemental strand, 9539153 - 9539093
Alignment:
Q  166 ttctgctctttacccaaatgattttgctcattctcaaagtaaatgtccatattgcctctgc 226  Q
    |||||||||||||| |||  ||||||||||||| |||||||||||| ||||||||| ||||    
T  9539153 ttctgctctttaccaaaactattttgctcattcccaaagtaaatgttcatattgcccctgc 9539093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 164 - 210
Target Start/End: Complemental strand, 25389927 - 25389881
Alignment:
Q  164 aattctgctctttacccaaatgattttgctcattctcaaagtaaatg 210  Q
    ||||||||||||||| ||||||  |||||||||||||||||||||||    
T  25389927 aattctgctctttactcaaatggatttgctcattctcaaagtaaatg 25389881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 164 - 202
Target Start/End: Complemental strand, 28360259 - 28360221
Alignment:
Q  164 aattctgctctttacccaaatgattttgctcattctcaa 202  Q
    |||||||||||||||||||||| ||||||||||||||||    
T  28360259 aattctgctctttacccaaatgtttttgctcattctcaa 28360221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 164 - 212
Target Start/End: Original strand, 31133180 - 31133228
Alignment:
Q  164 aattctgctctttacccaaatgattttgctcattctcaaagtaaatgtc 212  Q
    ||||||||||||||||||||| |||| ||||||| | ||||||||||||    
T  31133180 aattctgctctttacccaaatcatttcgctcatttttaaagtaaatgtc 31133228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 169 - 228
Target Start/End: Complemental strand, 38147144 - 38147085
Alignment:
Q  169 tgctctttacccaaatgattttgctcattctcaaagtaaatgtccatattgcctctgcgt 228  Q
    |||||||||||||||||  || ||||||||  ||||||||||| |||||| |||||||||    
T  38147144 tgctctttacccaaatggattcgctcattcctaaagtaaatgttcatattacctctgcgt 38147085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 164 - 210
Target Start/End: Original strand, 12965050 - 12965096
Alignment:
Q  164 aattctgctctttacccaaatgattttgctcattctcaaagtaaatg 210  Q
    |||||||||||||||||||| | || |||||||| ||||||||||||    
T  12965050 aattctgctctttacccaaacgtttctgctcattttcaaagtaaatg 12965096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 164 - 210
Target Start/End: Complemental strand, 22788062 - 22788016
Alignment:
Q  164 aattctgctctttacccaaatgattttgctcattctcaaagtaaatg 210  Q
    ||||||||||||||||||||||  |||| |||||| |||||||||||    
T  22788062 aattctgctctttacccaaatggatttgttcattcccaaagtaaatg 22788016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 164 - 208
Target Start/End: Original strand, 20685007 - 20685051
Alignment:
Q  164 aattctgctctttacccaaatgattttgctcattctcaaagtaaa 208  Q
    |||||||||| ||||||||||| ||  ||||||||||||||||||    
T  20685007 aattctgctcattacccaaatggttccgctcattctcaaagtaaa 20685051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.00000000009; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 164 - 214
Target Start/End: Complemental strand, 33164582 - 33164532
Alignment:
Q  164 aattctgctctttacccaaatgattttgctcattctcaaagtaaatgtcca 214  Q
    |||||||||| ||||||||||| ||  ||||||||||||||||||||||||    
T  33164582 aattctgctcattacccaaatggttccgctcattctcaaagtaaatgtcca 33164532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 164 - 209
Target Start/End: Complemental strand, 38677739 - 38677694
Alignment:
Q  164 aattctgctctttacccaaatgattttgctcattctcaaagtaaat 209  Q
    |||||||||||||||||||| ||||||| |||||| ||||||||||    
T  38677739 aattctgctctttacccaaacgattttgttcattcccaaagtaaat 38677694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 164 - 214
Target Start/End: Original strand, 28796621 - 28796671
Alignment:
Q  164 aattctgctctttacccaaatgattttgctcattctcaaagtaaatgtcca 214  Q
    |||||||||| |||||||||  || | ||||||||||||||||||||||||    
T  28796621 aattctgctcattacccaaacaatatcgctcattctcaaagtaaatgtcca 28796671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 164 - 214
Target Start/End: Original strand, 36217871 - 36217921
Alignment:
Q  164 aattctgctctttacccaaatgattttgctcattctcaaagtaaatgtcca 214  Q
    ||||||||||||||| |||||| |||| ||||||| ||||||||| |||||    
T  36217871 aattctgctctttactcaaatggttttactcattcccaaagtaaaagtcca 36217921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 164 - 218
Target Start/End: Original strand, 37576544 - 37576598
Alignment:
Q  164 aattctgctctttacccaaatgattttgctcattctcaaagtaaatgtccatatt 218  Q
    |||||||||| ||||||||| | |||||||| ||  |||||||||||||||||||    
T  37576544 aattctgctcattacccaaacggttttgctcgtttccaaagtaaatgtccatatt 37576598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 164 - 210
Target Start/End: Original strand, 54208181 - 54208227
Alignment:
Q  164 aattctgctctttacccaaatgattttgctcattctcaaagtaaatg 210  Q
    |||| ||||||||| ||||||| |||||||||||| |||||||||||    
T  54208181 aattatgctctttatccaaatggttttgctcattcccaaagtaaatg 54208227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 175 - 208
Target Start/End: Original strand, 37030921 - 37030954
Alignment:
Q  175 ttacccaaatgattttgctcattctcaaagtaaa 208  Q
    |||||||||||||||||||||||| |||||||||    
T  37030921 ttacccaaatgattttgctcattcccaaagtaaa 37030954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.00000000009; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 164 - 214
Target Start/End: Original strand, 3792297 - 3792347
Alignment:
Q  164 aattctgctctttacccaaatgattttgctcattctcaaagtaaatgtcca 214  Q
    |||||||||| |||||||||||||| | |||||||||||| ||||||||||    
T  3792297 aattctgctcattacccaaatgattctactcattctcaaaataaatgtcca 3792347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 164 - 210
Target Start/End: Original strand, 5602945 - 5602991
Alignment:
Q  164 aattctgctctttacccaaatgattttgctcattctcaaagtaaatg 210  Q
    ||||||||||||||||||||||  ||||||||||| |||||||||||    
T  5602945 aattctgctctttacccaaatggatttgctcattcccaaagtaaatg 5602991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 166 - 212
Target Start/End: Complemental strand, 9862967 - 9862921
Alignment:
Q  166 ttctgctctttacccaaatgattttgctcattctcaaagtaaatgtc 212  Q
    |||||||||||||||||||||||| |||||||| |||| ||||||||    
T  9862967 ttctgctctttacccaaatgatttcgctcattcccaaaataaatgtc 9862921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 164 - 214
Target Start/End: Complemental strand, 37260990 - 37260940
Alignment:
Q  164 aattctgctctttacccaaatgattttgctcattctcaaagtaaatgtcca 214  Q
    |||| ||||||||||||||| | |||||| |||||||||||||||||||||    
T  37260990 aattatgctctttacccaaacggttttgcccattctcaaagtaaatgtcca 37260940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 167 - 211
Target Start/End: Complemental strand, 35392178 - 35392134
Alignment:
Q  167 tctgctctttacccaaatgattttgctcattctcaaagtaaatgt 211  Q
    ||||||||||||||||||  |||||||||||| ||||||||||||    
T  35392178 tctgctctttacccaaattgttttgctcattcccaaagtaaatgt 35392134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 164 - 214
Target Start/End: Original strand, 20447024 - 20447074
Alignment:
Q  164 aattctgctctttacccaaatgattttgctcattctcaaagtaaatgtcca 214  Q
    |||| |||| ||||||||||   ||||||||||||||||||||||||||||    
T  20447024 aattatgctttttacccaaactgttttgctcattctcaaagtaaatgtcca 20447074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 164 - 214
Target Start/End: Original strand, 20532787 - 20532837
Alignment:
Q  164 aattctgctctttacccaaatgattttgctcattctcaaagtaaatgtcca 214  Q
    |||| |||| ||||||||||   ||||||||||||||||||||||||||||    
T  20532787 aattatgctttttacccaaactgttttgctcattctcaaagtaaatgtcca 20532837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 164 - 210
Target Start/End: Complemental strand, 28476059 - 28476013
Alignment:
Q  164 aattctgctctttacccaaatgattttgctcattctcaaagtaaatg 210  Q
    |||||||||| ||||||||||| ||  ||||||||||||||||||||    
T  28476059 aattctgctcattacccaaatggttccgctcattctcaaagtaaatg 28476013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 164 - 212
Target Start/End: Complemental strand, 5119108 - 5119060
Alignment:
Q  164 aattctgctctttacccaaatgattttgctcattctcaaagtaaatgtc 212  Q
    |||||||||||||| ||||| | ||||||||||||  ||||||||||||    
T  5119108 aattctgctctttatccaaacggttttgctcattcctaaagtaaatgtc 5119060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 164 - 228
Target Start/End: Original strand, 42883109 - 42883173
Alignment:
Q  164 aattctgctctttacccaaatgattttgctcattctcaaagtaaatgtccatattgcctctgcgt 228  Q
    ||||||||||||||||||||   |||||||||| |  ||||||||||| ||||||| | ||||||    
T  42883109 aattctgctctttacccaaacagttttgctcatacctaaagtaaatgttcatattgtccctgcgt 42883173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 164 - 228
Target Start/End: Complemental strand, 3588622 - 3588558
Alignment:
Q  164 aattctgctctttacccaaatgattttgctcattctcaaagtaaatgtccatattgcctctgcgt 228  Q
    |||||| |||||||||||||||| ||||||||||| |||| |||||| ||| | |||| ||||||    
T  3588622 aattctactctttacccaaatgaatttgctcattcccaaattaaatgaccaaaatgcccctgcgt 3588558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 164 - 208
Target Start/End: Original strand, 9418588 - 9418632
Alignment:
Q  164 aattctgctctttacccaaatgattttgctcattctcaaagtaaa 208  Q
    |||||||||| ||||||||||| ||| |||||||| |||||||||    
T  9418588 aattctgctcattacccaaatggtttcgctcattcccaaagtaaa 9418632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 164 - 218
Target Start/End: Original strand, 3758923 - 3758977
Alignment:
Q  164 aattctgctctttacccaaatgattttgctcattctcaaagtaaatgtccatatt 218  Q
    |||||||||||||||| ||| | |||| ||||||| |||||||||||| ||||||    
T  3758923 aattctgctctttaccaaaacggttttactcattcccaaagtaaatgttcatatt 3758977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 164 - 212
Target Start/End: Original strand, 38739388 - 38739436
Alignment:
Q  164 aattctgctctttacccaaatgattttgctcattctcaaagtaaatgtc 212  Q
    |||| ||||||||||||||||  ||| ||||||| ||||||||||||||    
T  38739388 aattatgctctttacccaaatcgtttcgctcattgtcaaagtaaatgtc 38739436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1763 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold1763
Description:

Target: scaffold1763; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 164 - 208
Target Start/End: Complemental strand, 441 - 397
Alignment:
Q  164 aattctgctctttacccaaatgattttgctcattctcaaagtaaa 208  Q
    |||| ||||||||||||||||| ||| |||||||| |||||||||    
T  441 aattatgctctttacccaaatggtttcgctcattcccaaagtaaa 397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0246 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0246
Description:

Target: scaffold0246; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 164 - 208
Target Start/End: Complemental strand, 2930 - 2886
Alignment:
Q  164 aattctgctctttacccaaatgattttgctcattctcaaagtaaa 208  Q
    |||||||||| ||||||||||| ||| ||||||||||||| ||||    
T  2930 aattctgctcattacccaaatggtttcgctcattctcaaaataaa 2886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 164 - 208
Target Start/End: Original strand, 23488 - 23532
Alignment:
Q  164 aattctgctctttacccaaatgattttgctcattctcaaagtaaa 208  Q
    |||||||||| |||  |||||| ||||||||||||||||||||||    
T  23488 aattctgctcattattcaaatggttttgctcattctcaaagtaaa 23532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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