View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5950_high_10 (Length: 293)
Name: NF5950_high_10
Description: NF5950
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5950_high_10 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 17 - 293
Target Start/End: Original strand, 8920680 - 8920951
Alignment:
| Q |
17 |
tgaattgccgaggacaactattccaaagttttaagatattgctggatgaagcttcggtctttgcaagccattcgacacattaatttccctctctaagaat |
116 |
Q |
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| T |
8920680 |
tgaattgccgaggacaactattccaaagttgtaagatatcgctggatgaagtttcagtctttgcaaaccattcgacacattaatttccctctctaagaat |
8920779 |
T |
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| Q |
117 |
atgctgaaagaaatattccaatttcctatgcaaaaatgacaaactcaaaatcattannnnnnnnatgttagttgttatgttatgttaatatttttctact |
216 |
Q |
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| T |
8920780 |
atgctgaaagaaatattccaatttcctatgcaaaaatgacaaactcaaaatcattgctatttttatgatagt-----tgttatgttaatatttttctact |
8920874 |
T |
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| Q |
217 |
ttatttgtatttgaattctaaacttttacttcttacctcctttaatcttttagttcaaccaactaatttaatcatcc |
293 |
Q |
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| T |
8920875 |
ttatttgtatttgaattctaaacttttacttcttacctcctttaatcttttagttcaacgaactaaattaatcatcc |
8920951 |
T |
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Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 27 - 125
Target Start/End: Original strand, 34790212 - 34790310
Alignment:
| Q |
27 |
aggacaactattccaaagttttaagatattgctggatgaagcttcggtctttgcaagccattcgacacattaatttccctctctaagaatatgctgaaa |
125 |
Q |
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|||| |||||||||||| ||||||| ||| ||| ||||||||||||||| |||| | | ||||||||||||||| | ||||||| |||||||||| |
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| T |
34790212 |
aggaaaactattccaaaattttaaggtatcatgggaggaagcttcggtctttacaagttaattgacacattaatttccttatctaagagtatgctgaaa |
34790310 |
T |
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