View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5950_high_6 (Length: 332)
Name: NF5950_high_6
Description: NF5950
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5950_high_6 |
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Alignment Details
Target: chr8 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 8 - 317
Target Start/End: Original strand, 4634362 - 4634669
Alignment:
| Q |
8 |
tatcataggatcactatctacaactacttgtcgacaaaatttagtttgtataatctgcctactcaaannnnnnncagtttacattgaactattatcaata |
107 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||| |
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| T |
4634362 |
tatcataggatcactatctacaactacttgtcaacaaaatttagtttgtataatctgcctactcaaatttttttcaatttacattgaactattatcaata |
4634461 |
T |
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| Q |
108 |
gtgtatttcataaacccatttttatcataaactgaactgaagcatattcaaacccaactctaattctcacagtatacttttgatttcttccttcatcaac |
207 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
4634462 |
gtgtatttcataaacccatttttatcataaactgaactgaagcatattcaaacccaactctaattctcacagtatacttttgatttcttccgtcatcaac |
4634561 |
T |
|
| Q |
208 |
acacctcaacatataggactcacgcacatttnnnnnnnnnnncaatatatatggcaaccaagtttcatatcctaatcaaccaagccaagacaaactattc |
307 |
Q |
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||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4634562 |
acacctcaacatataggactcacacacattt--aaaaaaaaccaatatatatggcaaccaagtttcatatcctaatcaaccaagccaagacaaactattc |
4634659 |
T |
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| Q |
308 |
cctgtaattt |
317 |
Q |
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|||||||||| |
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| T |
4634660 |
cctgtaattt |
4634669 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 129; Significance: 1e-66; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 132 - 317
Target Start/End: Complemental strand, 21838357 - 21838172
Alignment:
| Q |
132 |
tcataaactgaactgaagcatattcaaacccaactctaattctcacagtatacttttgatttcttccttcatcaacacacctcaacatataggactcacg |
231 |
Q |
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||||||||| |||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21838357 |
tcataaactcaactaaagcatattcaaacccaactctaattctcacaatatacttttgatttcttccttcatcaacacacctcaacatataggactcaca |
21838258 |
T |
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| Q |
232 |
cacatttnnnnnnnnnnncaatatatatggcaaccaagtttcatatcctaatcaaccaagccaagacaaactattccctgtaattt |
317 |
Q |
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||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
21838257 |
cacatttaaaaaaaaaaccaatatataaggcaaccaagtttcatatcctaatcaaccaagccaagacaaactatgccctgtaattt |
21838172 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 253 - 317
Target Start/End: Complemental strand, 17732998 - 17732934
Alignment:
| Q |
253 |
tatatatggcaaccaagtttcatatcctaatcaaccaagccaagacaaactattccctgtaattt |
317 |
Q |
| |
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|||||| |||| |||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17732998 |
tatataaggcacccaagttttatatcctaatcaaccaagccaagacaaactattccctgtaattt |
17732934 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 275 - 307
Target Start/End: Complemental strand, 7762169 - 7762137
Alignment:
| Q |
275 |
tatcctaatcaaccaagccaagacaaactattc |
307 |
Q |
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||||||||||| ||||||||||||||||||||| |
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| T |
7762169 |
tatcctaatcagccaagccaagacaaactattc |
7762137 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 8 - 68
Target Start/End: Original strand, 660681 - 660741
Alignment:
| Q |
8 |
tatcataggatcactatctacaactacttgtcgacaaaatttagtttgtataatctgccta |
68 |
Q |
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||||| ||||||||||||||||||||| |||| ||||||||| ||| ||||||||| |||| |
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| T |
660681 |
tatcacaggatcactatctacaactacctgtcaacaaaatttggttggtataatcttccta |
660741 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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