View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5950_low_1 (Length: 933)
Name: NF5950_low_1
Description: NF5950
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5950_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 412; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 412; E-Value: 0
Query Start/End: Original strand, 117 - 649
Target Start/End: Original strand, 43183973 - 43184505
Alignment:
| Q |
117 |
aaaaataataccagtagcatcataaacaacgaaaaagtcaaatatatctattctcctgaatcttaatcccacttgtgaaagcctacaagacaatgagtta |
216 |
Q |
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| T |
43183973 |
aaaaataatacgagtagcatcataaacaaa-aaaaagtcaaatatatctattctcctgaatcttaatcccacttgtgaaagcctacaagacaatgagtta |
43184071 |
T |
|
| Q |
217 |
acaaaaacatttttcaagacaaagtttgttgatcaagaaatcaaaattcaacggagaaaaatccaaatcaacaagccaattggatgctccttttcacaca |
316 |
Q |
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| T |
43184072 |
acaaaaacatttttcaagacaaagtttgttgatcaagaaatcaaaattcaacggagaaaaatccaaatcaacatgccaattggatggtccttttcacaca |
43184171 |
T |
|
| Q |
317 |
aaaattttctatatttagcaaggaactcaaccacccttatcctcttcaattaattgtgtccaaatcaaggttcttcctctctttttcccagccgtcaacc |
416 |
Q |
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| T |
43184172 |
aaaaatttctatatttagcaaggaactcaaccacccttatcctcttcaattaattgtgtcc-aatcaaggttcttcctctctttttcccagccgtcaacc |
43184270 |
T |
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| Q |
417 |
ttcaattccagctgcaatttcaggagcaagaccatatttaaaaaacatctttgaggtcaacaactcttgtaattgtgttcctt--nnnnnnnnntcttct |
514 |
Q |
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| T |
43184271 |
ttcaattccagctgcaatttcaggagcaagatcatatttaaaaaacatctttgaggtcaacaattcttgtaattgtgttccttaaaaacaaaaatcttct |
43184370 |
T |
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| Q |
515 |
aattgtgaaatagtatgtatataaaattattcatattgtaatgttaaactaaaatactctttccaaatttaagcnnnnnnntgacatagtatattggact |
614 |
Q |
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| T |
43184371 |
aattgtgaaatagtatgtatataaaattactcatattgcaatgttaaactaaaatactctttccaaatttaagcaaaaaaatgacatagtttattggact |
43184470 |
T |
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| Q |
615 |
taattatcatacacaaaatattaattaagaaggaa |
649 |
Q |
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| T |
43184471 |
taattatcatacacaaaatgttaattaggaaggaa |
43184505 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 112; E-Value: 4e-56
Query Start/End: Original strand, 780 - 918
Target Start/End: Original strand, 43184544 - 43184683
Alignment:
| Q |
780 |
acaaaatatgtctccaatggaatttggtattttcatgtgcgccaaaactctttggtgtgaaccaatt-tttaagtttgaattagagaagcatacaccctt |
878 |
Q |
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| T |
43184544 |
acaaaatatgtctccatatgaatttggtattttcatgtgcgccaaaactctttggtgtgaaccaattctttaagtttgaattagagaagcatacaccctt |
43184643 |
T |
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| Q |
879 |
atggtggctgtctagtggacgtagaaactcaacttatata |
918 |
Q |
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| T |
43184644 |
atggtggttatctagtggacgtagaaactcaacttatata |
43184683 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 684 - 725
Target Start/End: Original strand, 43184505 - 43184546
Alignment:
| Q |
684 |
agttgataaagacattatatggcagatagtgtaaacctcaca |
725 |
Q |
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| T |
43184505 |
agttgataaagacattatatagcagatagtgtaaacctcaca |
43184546 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 32
Target Start/End: Original strand, 43183430 - 43183461
Alignment:
| Q |
1 |
taaaacgattaaatatcttttcaacaaatctg |
32 |
Q |
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| T |
43183430 |
taaaacgattaaatatcttttcaacaaatctg |
43183461 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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