View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5950_low_11 (Length: 290)
Name: NF5950_low_11
Description: NF5950
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5950_low_11 |
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Alignment Details
Target: chr8 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 279
Target Start/End: Complemental strand, 4634364 - 4634087
Alignment:
| Q |
1 |
atagaggttgtttgagtggcttggatttctgactatgctattgggtaagagttcattttccagagattttaaatgttcagtttatctgtaattgtaaatt |
100 |
Q |
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| T |
4634364 |
atagaggtggtttgagtggcttggatttctgactatgctattgggtaagagttcattttccagagattttaaatgttcagtttatctgtaattgtaaatt |
4634265 |
T |
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| Q |
101 |
tgtggtaaggcatttattgtcatttttgcaggttatttgaaatgtaaagtgcatacaaggattggttatagcaagtgaagaagctacaagttaaatacat |
200 |
Q |
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| T |
4634264 |
tgtggtaaggcatttattgtcatttttgcaggttatttgaaatgtaaagtgcatacaaggattggttatagcaagtgaagaagctaaaagttaaatacat |
4634165 |
T |
|
| Q |
201 |
tgtgtaaagctggga-nnnnnnnnnnnngcttctgcttgctagagacaaagggtgtgtgatatattctactattgatgat |
279 |
Q |
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| T |
4634164 |
--tgtaaagctgggatttttttttttttgcttctgcttgctagaaacaaggggtgtgtgatatattctactattgatgat |
4634087 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 128; Significance: 3e-66; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 5 - 279
Target Start/End: Complemental strand, 660680 - 660422
Alignment:
| Q |
5 |
aggttgtttgagtggcttggatttctgactatgctattgggtaagagttcattttccagagattttaaatgttcagtttatctgtaattgtaaatttgtg |
104 |
Q |
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|||| ||||||||||||||||||||||| ||||| |||||||||||||| || ||||||||| ||| |||||||||||||||||||||||| |
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| T |
660680 |
aggtggtttgagtggcttggatttctgaatatgccattgggtaagagtt----------agtttttaaatgctcaatttatctgtaattgtaaatttgtg |
660591 |
T |
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| Q |
105 |
gtaaggcatttattgtcatttttgcaggttatttgaaatgtaaagtgcatacaaggattggttatagcaagtgaagaagctacaagttaaatacattgtg |
204 |
Q |
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| T |
660590 |
gtaaagcatttattgtcatttctgcaggttatcttaaatgtaaagtgcatacaaggattggttatagcaagtgaagaagctaaaagctaaatacat--tg |
660493 |
T |
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| Q |
205 |
taaagctgggannnnnnnnnnnngcttctgcttgctagagacaaagggtgtgtgatatattctactattgatgat |
279 |
Q |
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||||||||||| ||||||||||||||||||||| |||||| | ||||||||||||||||||||| |
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| T |
660492 |
taaagctggga----ttttttttgcttctgcttgctagagacaaggggtgtatcatatattctactattgatgat |
660422 |
T |
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