View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5950_low_2 (Length: 570)
Name: NF5950_low_2
Description: NF5950
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5950_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 520; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 520; E-Value: 0
Query Start/End: Original strand, 22 - 560
Target Start/End: Original strand, 40181624 - 40182160
Alignment:
| Q |
22 |
tgaagcttgcaaatctaaagcaaatcatttcatgcaggttttgcagatggaatctactgtcttgaattttctaaaattcgaaatgactgccccaacaatt |
121 |
Q |
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| T |
40181624 |
tgaagcttgcaaatctaaagcaaatcatttcatgcaggttttgcagatggaatctactgtcttgaattttctaaaattcgaaatgactgccccaacaatt |
40181723 |
T |
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| Q |
122 |
aaatgcttcttgagaagatttgtacgtgcagctcaaggaattgatgaggtatcttctacttttcattggtgatttataaggctcatgcacttgtgtcata |
221 |
Q |
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| T |
40181724 |
aaatgcttcttgagaagatttgtacgtgcagctcaaggaattgatgaggtatcttctacttttcattggtgatttataaggctcatgcacttgtgtcata |
40181823 |
T |
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| Q |
222 |
ggatgttcaaacacgagcacctaatttttcacacactttatttgcaccaacctgtaagaacacatgatataagctataagaagtaattggagaagcaagt |
321 |
Q |
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| T |
40181824 |
ggatgttcaaacacgagcacctaatttttcaca--ctttatttgcaccaacctgtaagaacacatgatataagctataagaagtaattggagaagcaagt |
40181921 |
T |
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| Q |
322 |
aagaacacatgacacactcacttctgatgataaattacagagaaactcaaacttatgactatttccatttctcacatttgatgagatagcattgatttgt |
421 |
Q |
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| T |
40181922 |
aagaacacattacacactcacttctgatgataaattacagagaaactcaaacttatgactatttccatttctcacatttgatgagatagcattgatttgt |
40182021 |
T |
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| Q |
422 |
atgttatggcacatgactctaattattaggattccatttctaaattattgaccccttttttcttggtttcatatgcattgctcaggtcccttcactacaa |
521 |
Q |
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| T |
40182022 |
atgttatggcacatgactctaattattaggattccatttctaaattattgaccccttttttcttggtttcatatgcattgctcaggtcccttcactacaa |
40182121 |
T |
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| Q |
522 |
ctagagtgcttaacaaattttatcgccgaattatctctg |
560 |
Q |
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| T |
40182122 |
ctagagtgcttgacaaattttatcgccgaattatctctg |
40182160 |
T |
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