View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5950_low_3 (Length: 434)

Name: NF5950_low_3
Description: NF5950
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5950_low_3
NF5950_low_3
[»] chr7 (2 HSPs)
chr7 (19-425)||(44501191-44501597)
chr7 (269-357)||(32413624-32413712)
[»] chr3 (12 HSPs)
chr3 (175-380)||(45870386-45870593)
chr3 (19-362)||(20994809-20995154)
chr3 (19-362)||(20981650-20981995)
chr3 (184-239)||(20977477-20977532)
chr3 (166-378)||(45856777-45856991)
chr3 (160-239)||(2996371-2996450)
chr3 (269-324)||(25601740-25601795)
chr3 (86-239)||(20949493-20949649)
chr3 (110-236)||(20948805-20948934)
chr3 (301-359)||(778229-778287)
chr3 (276-357)||(25596902-25596983)
chr3 (166-234)||(45881805-45881873)
[»] chr4 (1 HSPs)
chr4 (172-380)||(3978077-3978287)
[»] chr5 (4 HSPs)
chr5 (88-366)||(7894982-7895264)
chr5 (150-380)||(38142015-38142247)
chr5 (75-149)||(7976609-7976683)
chr5 (328-380)||(7976853-7976905)
[»] chr6 (7 HSPs)
chr6 (268-378)||(33844279-33844389)
chr6 (269-326)||(33840288-33840345)
chr6 (269-357)||(7115536-7115624)
chr6 (269-357)||(7120608-7120696)
chr6 (269-357)||(7124012-7124100)
chr6 (301-357)||(7140758-7140814)
chr6 (301-357)||(8680372-8680428)
[»] chr2 (1 HSPs)
chr2 (268-356)||(43864048-43864136)


Alignment Details
Target: chr7 (Bit Score: 379; Significance: 0; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 19 - 425
Target Start/End: Original strand, 44501191 - 44501597
Alignment:
Q  19 aaagtctgagatgaaaatatgctaggcggaatttgtgcattgtcagcaaggacactaagtcctgacagctggactttgtgtaaaatagcacaattcacaa 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| ||||| ||||||||||||||||||    
T  44501191 aaagtctgagatgaaaatatgctaggcggaatttgtgcattgtcagcatggacactaagtcctgaccgctggactatgtgtgaaatagcacaattcacaa 44501290  T
Q  119 tccttttgagtaggtgaaactccaagcgaccattatggctgaaattgagagtgtgtagtgagatagaggaatcgtgaagagataaaaccttagacacgaa 218  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44501291 tccttttgagtaggtgaaactccaagcaaccattatggctgaaattgagagtgtgtagtgagatagaggaatcgtgaagagataaaaccttagacacgaa 44501390  T
Q  219 tttattgaatatcttgtaagtgtgaaaatctgaagaatgctataagtgcaggaagacgtttccaaagatccttccatctgggggacaaaatgcaagtctg 318  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44501391 tttattgaatatcttgaaagtgtgaaaatctgaagaatgctataagtgcaggaagacgtttccaaagatccttccatctgggggacaaaatgcaagtctg 44501490  T
Q  319 aacagcgtttttggcattcaaaaaagacagtatgtgaaggataatgcagtcaggtaagtcgccaagtcagtctttacttacactctcagtgagttttaat 418  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  44501491 aacagcgtttttggcattcaaaaaagacagtatgtgaaggataatgcagtcaggtaagtcgccaagtcggtctttacttacactctcagtgagttttaat 44501590  T
Q  419 ttcttct 425  Q
    |||||||    
T  44501591 ttcttct 44501597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 269 - 357
Target Start/End: Complemental strand, 32413712 - 32413624
Alignment:
Q  269 ggaagacgtttccaaagatccttccatctgggggacaaaatgcaagtctgaacagcgtttttggcattcaaaaaagacagtatgtgaag 357  Q
    |||||||| ||||| |||| ||||||||| | ||||||||||||||| ||||| |||| |||||  |||||| | || |||||||||||    
T  32413712 ggaagacgcttccagagattcttccatcttgtggacaaaatgcaagtttgaacggcgtgtttggtgttcaaagaggagagtatgtgaag 32413624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 65; Significance: 2e-28; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 175 - 380
Target Start/End: Original strand, 45870386 - 45870593
Alignment:
Q  175 agtgagatagaggaatcgtgaagagataaaaccttagacacgaatttattgaatatcttgtaagtgtgaaaatctgaagaatgc--tataagtgcaggaa 272  Q
    |||||||||||||||||  | |||||||||||| |||| || ||| |  |||||||||| |||||  |||| ||   |||||||  |||||| | |||||    
T  45870386 agtgagatagaggaatcccggagagataaaaccctagaaacaaatctggtgaatatcttataagttcgaaagtcatcagaatgcaatataagagaaggaa 45870485  T
Q  273 gacgtttccaaagatccttccatctgggggacaaaatgcaagtctgaacagcgtttttggcattcaaaaaagacagtatgtgaaggataatgcagtcagg 372  Q
    ||||||||||||||||| |  |||| || || |||| |||||| ||||| |||| |||||||||| |||| |||||||||||||||||||  ||||||||    
T  45870486 gacgtttccaaagatccgtatatcttggtgataaaacgcaagtttgaactgcgtctttggcattcgaaaacgacagtatgtgaaggataacacagtcagg 45870585  T
Q  373 taagtcgc 380  Q
    || |||||    
T  45870586 taggtcgc 45870593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 19 - 362
Target Start/End: Original strand, 20994809 - 20995154
Alignment:
Q  19 aaagtctgagatgaaaatatgctaggcggaatttgtgcattgtcagcaag-gacactaagtcctgacagctggactttgtgtaaaatagcacaattcaca 117  Q
    |||| |||| ||||||||| |||| | |||||||| ||| ||||| |||| ||||| ||||  | || ||||||| |||||| |||||||  ||||||||    
T  20994809 aaaggctgaaatgaaaataagctatgaggaatttgcgcaatgtca-caagtgacacaaagttgtaactgctggacattgtgtgaaatagcgtaattcaca 20994907  T
Q  118 atccttttgagtaggtgaaactccaagcgaccattatg--gctgaaattga-gagtgtgtagtgagatagaggaatcgtgaagagataaaaccttagaca 214  Q
    ||| |||| |||   |||  ||| ||||| ||||||||  ||||||| | | |||  || |||||||||||||||||  |||||||||||| ||||||||    
T  20994908 atctttttaagt---tgaggctcaaagcggccattatgacgctgaaaatcaagagactgaagtgagatagaggaatcacgaagagataaaatcttagaca 20995004  T
Q  215 cgaatttattgaatatcttgtaagtgtgaaaatctgaagaatgctat--aagtgcaggaagacgtttccaaagatccttccatctgggggacaaaatgca 312  Q
    ||||| |  ||||||||||| ||||  |||| |||  |  |||| ||  ||| ||||||||||||||||||||||||||  || | ||||| ||||  ||    
T  20995005 cgaatgtggtgaatatcttgaaagtacgaaagtctctattatgcaatgtaagagcaggaagacgtttccaaagatccttatatattggggataaaacaca 20995104  T
Q  313 agtctgaacagcgtttttggcattcaaaaaagacagtatgtgaaggataa 362  Q
    ||| |||||||||| |||||  |||| ||| || || |||||||||||||    
T  20995105 agtttgaacagcgtctttggtgttcagaaaggagagaatgtgaaggataa 20995154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 19 - 362
Target Start/End: Original strand, 20981650 - 20981995
Alignment:
Q  19 aaagtctgagatgaaaatatgctaggcggaatttgtgcattgtcagcaaggacactaagtcctgacagctggactttgtgtaaaatagcacaattcacaa 118  Q
    |||| |||| ||||||||| |||| | |||||||| ||| |||||  |  ||||| ||||  | || ||||||| |||||| |||||||  |||||||||    
T  20981650 aaaggctgaaatgaaaataggctatgaggaatttgcgcaatgtcacaattgacacaaagttgtaaccgctggacattgtgtgaaatagcgtaattcacaa 20981749  T
Q  119 tccttttgagtaggtgaaactccaagcgaccattatg--gctgaaattga-gagtgtgtagtgagatagaggaatcgtgaagagataaaaccttagacac 215  Q
    || |||| |||   |||  ||| ||||| ||||||||  ||||||| | | |||  || |||||||||||||||||  |||||||||||| |||||||||    
T  20981750 tctttttaagt---tgaggctcaaagcggccattatgacgctgaaaatcaagagactgaagtgagatagaggaatcacgaagagataaaatcttagacac 20981846  T
Q  216 gaatttattgaatatcttgtaagtgtgaaaatctgaagaatgc--tataagtgcaggaagacgtttccaaagatccttccatctgggggacaaaatgcaa 313  Q
    |||| |  ||||||||||| || |  |||| |||  |  ||||  | |||| ||||||||||||||||||||||| ||  || | ||||| ||||  |||    
T  20981847 gaatgtggtgaatatcttgaaattacgaaagtctctattatgcaatgtaagagcaggaagacgtttccaaagatctttatatattggggataaaacacaa 20981946  T
Q  314 gtctgaacagcgtttttggcattcaaaaaagacagtatgtgaaggataa 362  Q
    || |||||||| | |||||  |||| ||| || || |||||||||||||    
T  20981947 gtttgaacagcatgtttggtgttcagaaaggagagaatgtgaaggataa 20981995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 184 - 239
Target Start/End: Complemental strand, 20977532 - 20977477
Alignment:
Q  184 gaggaatcgtgaagagataaaaccttagacacgaatttattgaatatcttgtaagt 239  Q
    ||||||||| |||||||||||| |||||||||||||||  ||||||||||||||||    
T  20977532 gaggaatcgcgaagagataaaatcttagacacgaatttggtgaatatcttgtaagt 20977477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 166 - 378
Target Start/End: Original strand, 45856777 - 45856991
Alignment:
Q  166 agagtgtgtagtgagatagaggaatcgtgaagagataaaaccttagacacgaatttattgaatatcttgtaagtgtgaaaatctgaagaatgctat--aa 263  Q
    |||| ||| |||| ||||||||||||  |||||||||||||||||||||| || ||  ||||||||||| ||||  |||| ||  | |||  | ||  ||    
T  45856777 agagcgtggagtgcgatagaggaatcacgaagagataaaaccttagacacaaagttggtgaatatcttgaaagttcgaaagtcataggaacacaatgtaa 45856876  T
Q  264 gtgcaggaagacgtttccaaagatccttccatctgggggacaaaatgcaagtctgaacagcgtttttggcattcaaaaaagacagtatgtgaaggataat 363  Q
    |    |||||  ||||||| ||||||||  |||| |||||||||||||||||   ||| |||| ||| || |||| ||||||||||||||| ||||||||    
T  45856877 gatttggaagttgtttccagagatccttgtatcttggggacaaaatgcaagttccaaccgcgtctttagcgttcagaaaagacagtatgtggaggataat 45856976  T
Q  364 gcagtcaggtaagtc 378  Q
      ||||| |||||||    
T  45856977 atagtcatgtaagtc 45856991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 160 - 239
Target Start/End: Original strand, 2996371 - 2996450
Alignment:
Q  160 aaattgagagtgtgtagtgagatagaggaatcgtgaagagataaaaccttagacacgaatttattgaatatcttgtaagt 239  Q
    |||| |||||| || | ||| ||||||||||||  ||||||||||||||||||||| |||||  ||||| ||||||||||    
T  2996371 aaatcgagagtctgcaatgaaatagaggaatcgcaaagagataaaaccttagacacaaatttggtgaatttcttgtaagt 2996450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 269 - 324
Target Start/End: Complemental strand, 25601795 - 25601740
Alignment:
Q  269 ggaagacgtttccaaagatccttccatctgggggacaaaatgcaagtctgaacagc 324  Q
    |||| |||||||||||||| ||||||||| | ||||||||||||||| ||||||||    
T  25601795 ggaatacgtttccaaagatacttccatcttgtggacaaaatgcaagtttgaacagc 25601740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 86 - 239
Target Start/End: Complemental strand, 20949649 - 20949493
Alignment:
Q  86 gctggactttgtgtaaaatagcacaattcacaatccttttgagtaggtgaaactccaagcgaccattatg--gctgaaattga-gagtgtgtagtgagat 182  Q
    ||||||| ||||||  ||||||  ||||||||||||||||||||| ||||  ||| || |||||| ||||  ||| ||| | | |||  | || || |||    
T  20949649 gctggacattgtgtttaatagcgtaattcacaatccttttgagtatgtgaggctctaaacgaccaatatgatgcttaaaatcaagagcttataatgtgat 20949550  T
Q  183 agaggaatcgtgaagagataaaaccttagacacgaatttattgaatatcttgtaagt 239  Q
    |||||||||   |||||||||||  ||||||||||||||  ||||||||||||||||    
T  20949549 agaggaatcacaaagagataaaattttagacacgaatttggtgaatatcttgtaagt 20949493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 110 - 236
Target Start/End: Complemental strand, 20948934 - 20948805
Alignment:
Q  110 aattcacaatccttttgagtaggtgaaactccaagcgaccattatggc---tgaaattgagagtgtgtagtgagatagaggaatcgtgaagagataaaac 206  Q
    |||||||||||||||| |||| ||||  ||| |||||| || |||| |   | ||||  |||||||||| || |||||||| |||  ||||||||||||     
T  20948934 aattcacaatccttttaagtatgtgaggctctaagcgaacaatatgacgcttaaaatcaagagtgtgtattgcgatagagggatcacgaagagataaaat 20948835  T
Q  207 cttagacacgaatttattgaatatcttgta 236  Q
    ||||||||| || ||  |||||||||||||    
T  20948834 cttagacacaaacttggtgaatatcttgta 20948805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 301 - 359
Target Start/End: Original strand, 778229 - 778287
Alignment:
Q  301 ggacaaaatgcaagtctgaacagcgtttttggcattcaaaaaagacagtatgtgaagga 359  Q
    ||||||||||||||| || || || | |||||| ||||||||||| |||||||||||||    
T  778229 ggacaaaatgcaagtttggactgcctctttggctttcaaaaaagatagtatgtgaagga 778287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 276 - 357
Target Start/End: Complemental strand, 25596983 - 25596902
Alignment:
Q  276 gtttccaaagatccttccatctgggggacaaaatgcaagtctgaacagcgtttttggcattcaaaaaagacagtatgtgaag 357  Q
    |||||||||||| ||||||||| |  |||||||||||||| ||||| || |  |||| ||||||||| ||||  ||||||||    
T  25596983 gtttccaaagattcttccatctcgtagacaaaatgcaagtttgaacggcatacttggtattcaaaaatgacaaaatgtgaag 25596902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 166 - 234
Target Start/End: Original strand, 45881805 - 45881873
Alignment:
Q  166 agagtgtgtagtgagatagaggaatcgtgaagagataaaaccttagacacgaatttattgaatatcttg 234  Q
    |||||||| |||| ||||||||||||    |||||||||||||| ||||| |||||  |||||||||||    
T  45881805 agagtgtggagtgtgatagaggaatcactgagagataaaaccttcgacacaaatttggtgaatatcttg 45881873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 172 - 380
Target Start/End: Complemental strand, 3978287 - 3978077
Alignment:
Q  172 tgtagtgagatagaggaatcgtgaagagataaaaccttagacacgaatttattgaatatcttgtaagtgtgaaaatctgaagaatgctat--aagtgcag 269  Q
    ||||||| ||||||||||||| ||||| ||||||| |||||||| ||| |  ||||| |||||||||    ||| |||||||||||| ||  ||| | ||    
T  3978287 tgtagtgcgatagaggaatcgcgaagaaataaaactttagacactaatctggtgaatttcttgtaagctccaaagtctgaagaatgcaatgtaagagtag 3978188  T
Q  270 gaagacgtttccaaagatccttccatctgggggacaaaatgcaagtctgaacagcgtttttggcattcaaaaaagacagtatgtgaaggataatgcagtc 369  Q
    ||||||||||||||||||||||  |||| | ||| |||| |||||| ||||| ||||  ||||  || ||||| || ||||||||||| |||||||  ||    
T  3978187 gaagacgtttccaaagatccttatatcttgtggataaaacgcaagtttgaaccgcgtggttggtgtttaaaaacgagagtatgtgaagaataatgctttc 3978088  T
Q  370 aggtaagtcgc 380  Q
    |||||||||||    
T  3978087 aggtaagtcgc 3978077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 50; Significance: 2e-19; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 88 - 366
Target Start/End: Complemental strand, 7895264 - 7894982
Alignment:
Q  88 tggactttgtgtaaaatagcacaattcacaatccttttgagtaggtgaaactccaagcgaccattatggctg--aaattga-gagtgtgtagtgagatag 184  Q
    ||||| |||||| |||||||| |||||||||| |||||||||| ||||  ||| |||||||||  || |||   ||||| | |||  || |||  || ||    
T  7895264 tggacattgtgtgaaatagcataattcacaattcttttgagtaagtgaggctctaagcgaccagcattgctattaaattcaagagcctgcagtttgacag 7895165  T
Q  185 aggaatcgtgaagagataaaaccttagacacgaatttattgaatatcttgtaagtgtgaaaatctgaagaatgctat--aagtgcaggaagacgtttcca 282  Q
    |||||| | |||||||||||||||||||||| |||||  ||||| || |||||    ||||||||| |||||   ||  ||| || || ||| |||||||    
T  7895164 aggaattgcgaagagataaaaccttagacacaaattttgtgaatttcgtgtaaaatcgaaaatctgtagaatcgaatctaagagcgggtagaagtttcca 7895065  T
Q  283 aagatccttccatctgggggacaaaatgcaagtctgaacagcgtttttggcattcaaaaaagacagtatgtgaaggataatgca 366  Q
     |||| ||||||||||   |||||||||||||| ||||| || | ||||||||||||||| || || |||||||||||||||||    
T  7895064 gagattcttccatctgatagacaaaatgcaagt-tgaacggcttgtttggcattcaaaaaggaaagaatgtgaaggataatgca 7894982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 150 - 380
Target Start/End: Original strand, 38142015 - 38142247
Alignment:
Q  150 attatggctgaaattgagagtgtgtagtgagatagaggaatcgtgaagagataaaaccttagacacgaatttattgaatatcttgta-agtgtgaaaatc 248  Q
    |||||| ||||||||||||| ||  |||| || |||||||||  |||||| ||||||| ||  ||||||||| |||||||||  ||| |||  |||| ||    
T  38142015 attatgtctgaaattgagagagttcagtgcgagagaggaatcacgaagagttaaaaccctatgcacgaatttgttgaatatc-ggtatagttcgaaagtc 38142113  T
Q  249 tgaagaatgc--tataagtgcaggaagacgtttccaaagatccttccatctgggggacaaaatgcaagtctgaacagcgtttttggcattcaaaaaagac 346  Q
    |||||||| |  |||||| ||||||||| ||||||| |||||| |||||||   ||||| |||  ||||   ||| || | ||| || |||||||| ||     
T  38142114 tgaagaatccaatataagagcaggaagaagtttccatagatccctccatcttaaggacagaattgaagttgtaactgcctgtttagcgttcaaaaaggag 38142213  T
Q  347 agtatgtgaaggataatgcagtcaggtaagtcgc 380  Q
    ||||||||||||||||  ||||||||||||||||    
T  38142214 agtatgtgaaggataacacagtcaggtaagtcgc 38142247  T

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Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 75 - 149
Target Start/End: Original strand, 7976609 - 7976683
Alignment:
Q  75 aagtcctgacagctggactttgtgtaaaatagcacaattcacaatccttttgagtaggtgaaactccaagcgacc 149  Q
    ||||||| || ||||||| |||||| |||||||| ||||||||||||||||||||| ||||  ||| ||||||||    
T  7976609 aagtcctaaccgctggacattgtgtgaaatagcataattcacaatccttttgagtaagtgaggctctaagcgacc 7976683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 328 - 380
Target Start/End: Original strand, 7976853 - 7976905
Alignment:
Q  328 tttggcattcaaaaaagacagtatgtgaaggataatgcagtcaggtaagtcgc 380  Q
    |||||| |||||||| || || ||||||||||||||||| || ||||||||||    
T  7976853 tttggcgttcaaaaaggagagaatgtgaaggataatgcattcgggtaagtcgc 7976905  T

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Target: chr6 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 268 - 378
Target Start/End: Original strand, 33844279 - 33844389
Alignment:
Q  268 aggaagacgtttccaaagatccttccatctgggggacaaaatgcaagtctgaacagcgtttttggcattcaaaaaagacagtatgtgaaggataatgcag 367  Q
    ||||| ||||||||| ||||  |||||||||| ||||||||||||||| ||||| ||||||| ||  |||||||| ||||  |||| ||  | |||||||    
T  33844279 aggaatacgtttccagagatgtttccatctggtggacaaaatgcaagtttgaacggcgttttcggttttcaaaaatgacaaaatgtaaataagaatgcag 33844378  T
Q  368 tcaggtaagtc 378  Q
    || ||||||||    
T  33844379 tcgggtaagtc 33844389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 269 - 326
Target Start/End: Original strand, 33840288 - 33840345
Alignment:
Q  269 ggaagacgtttccaaagatccttccatctgggggacaaaatgcaagtctgaacagcgt 326  Q
    |||| ||||||||||||||  |||||||||| |||||||||||||||  |||||||||    
T  33840288 ggaatacgtttccaaagatgtttccatctggtggacaaaatgcaagttcgaacagcgt 33840345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 269 - 357
Target Start/End: Original strand, 7115536 - 7115624
Alignment:
Q  269 ggaagacgtttccaaagatccttccatctgggggacaaaatgcaagtctgaacagcgtttttggcattcaaaaaagacagtatgtgaag 357  Q
    |||||||  ||||| |||| |||||||||   ||||||||  ||||| ||||| |||| |||||  ||||||||||| |||||||||||    
T  7115536 ggaagacacttccagagattcttccatcttttggacaaaacacaagtttgaactgcgtatttggtgttcaaaaaagagagtatgtgaag 7115624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 269 - 357
Target Start/End: Original strand, 7120608 - 7120696
Alignment:
Q  269 ggaagacgtttccaaagatccttccatctgggggacaaaatgcaagtctgaacagcgtttttggcattcaaaaaagacagtatgtgaag 357  Q
    |||||||  ||||| |||| |||||||||   ||||||||  ||||| ||||| |||| |||||  ||||||||||| |||||||||||    
T  7120608 ggaagacacttccagagattcttccatcttttggacaaaacacaagtttgaactgcgtatttggtgttcaaaaaagagagtatgtgaag 7120696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 269 - 357
Target Start/End: Original strand, 7124012 - 7124100
Alignment:
Q  269 ggaagacgtttccaaagatccttccatctgggggacaaaatgcaagtctgaacagcgtttttggcattcaaaaaagacagtatgtgaag 357  Q
    |||||||  ||||| |||| |||||||||   ||||||||  ||||| ||||| |||| |||||  ||||||||||| |||||||||||    
T  7124012 ggaagacacttccagagattcttccatcttttggacaaaacacaagtttgaactgcgtatttggtgttcaaaaaagagagtatgtgaag 7124100  T

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Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 301 - 357
Target Start/End: Original strand, 7140758 - 7140814
Alignment:
Q  301 ggacaaaatgcaagtctgaacagcgtttttggcattcaaaaaagacagtatgtgaag 357  Q
    ||||||||| ||||| ||||| |||| ||| | |||||||||||| |||||||||||    
T  7140758 ggacaaaatacaagtttgaactgcgtatttagtattcaaaaaagagagtatgtgaag 7140814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 301 - 357
Target Start/End: Original strand, 8680372 - 8680428
Alignment:
Q  301 ggacaaaatgcaagtctgaacagcgtttttggcattcaaaaaagacagtatgtgaag 357  Q
    ||||||||| ||||| ||||| |||| ||| | |||||||||||| |||||||||||    
T  8680372 ggacaaaatacaagtttgaactgcgtatttagtattcaaaaaagagagtatgtgaag 8680428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 268 - 356
Target Start/End: Original strand, 43864048 - 43864136
Alignment:
Q  268 aggaagacgtttccaaagatccttccatctgggggacaaaatgcaagtctgaacagcgtttttggcattcaaaaaagacagtatgtgaa 356  Q
    ||||||||  ||||||||||   |||||||   ||||||||||||||| ||||| || ||||| ||||||||||| |||||||||||||    
T  43864048 aggaagactcttccaaagattgatccatcttttggacaaaatgcaagtttgaacggccttttttgcattcaaaaaggacagtatgtgaa 43864136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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